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The map label for this gene is traC [H]

Identifier: 53721419

GI number: 53721419

Start: 522852

End: 525719

Strand: Reverse

Name: traC [H]

Synonym: BPSS0382

Alternate gene names: 53721419

Gene position: 525719-522852 (Counterclockwise)

Preceding gene: 53721420

Following gene: 53721417

Centisome position: 16.57

GC content: 67.82

Gene sequence:

>2868_bases
ATGAGTAACGCACCCATGTCCGAATTCGAGCGGGCAAGTGTCGCGCTCGGCTATGTTCCGGCCGACGATCGCGACACGTG
GCGTCAGGCCGGCATGGCGCTCAAGGCCGAGTTTGGCGAAGAGGGTTTCACCCTCTGGAACGAATGGAGCCAAGGCGCGC
AGAACTACAACGTAAGAGACGCCCGCGATGTGTGGAAGTCGTTCAAGGGCGGCAAGATCACCATCAACACGCTGTTCCAC
CTCGCAAAGCTTGGCGGTTTCGATCCGCGCGCGCATCGCGCGATGCCCATCGATCCAGCGCAGCGCGAACGGCAGCACGC
CGAGCGCGCCACCCGCGAGGCGGCCGAGATGGCCACGCTCACCGAGAAGCAGCAAGCCGCGTCGGCGCTCGCCGAATCGA
TCTGGTCGACGGCCGAGCCTGCACCGGCCGATCACCCCTACCTCGTTCGCAAACGCATCCCCGCCGACGCGCTGCGCGTC
TATCGCGGCAACCTGAGCATCGGCACGGCCGCGTGCGACGGCGCACTCGTCATTCCGGCACGTGACGCGGACGGCAAGCT
GTGGACGCTCGAATTCATCCTGACCGATGGTCAGAAACGCTATCTGCCGAACGGCCGTAAGGCGGGCTGCTTCGCGCTGA
TCGGCGGCGCGGTGTCGTCCGTCCTGCTGGTCGGCGAGGGCTACGCGACCTGCGCGACGCTCGCGGCGGCGACGGGCTAC
CCGGCCGCCGTCGCGTTCGACGCCGGCAACCTGCACGCCGTCGCGACGGCGCTGCGCGACCAGTATCCGGACGCGCGCAT
CGTCGTGTGCGCCGACGACGACCACACGACGAACGGCAATCCGGGCGTCACGAAGGCTCGCGCGGCAGCCGACGCGGTAG
GCGGCGTGGTGGCCGTTCCCGACTTCGGCCCGAACCGTCCGGCCGCCGGTACGGACTTCAACGACGTGGCCGCCCACCTC
GGTCCGGATGCGGTGGCCGCCGCCGTGCGCGCGGCGCTCGCCGTAGACGGCTCGCCGGGTTCCGATAAGGGCAAGGCTAG
GCCGCCAGTCACGAAGCCCGCCAAGCGCCCCAAAACGGCTCGCGCGCAGGATGGCACGTGGCGGTTCGAGGTCGACGACG
AGGGCGTCTGGTATCACGGCTTCAACAATCAGGGCGATCCGCTGCCGCCGCATTGGATCAGCACGCGCATCGACGTAATC
GCCGAGACGCGTAACGAGATGAGCAGCGAATGGGGCTACCTGCTGGAATTCACCGACCGCGACGGCATACAGAAGCGCTG
GGCGGTGCCGGCCGGCCTGTTCGCGGGCGACGGGACCGAGTTGCGGCGCATGCTGCTCGATATGGGCGTCAAGCTTGGCG
TGACGCAGACCGCCCGCACGCAGATCGCGAACTACATCCAGATGGCGCGGCCCGACGAGCGCGTGCGCTGCGTGCCGCGC
GTCGGCTGGCACCACGGCGCGTTCGTGCTGCCCGATCGGGTGATCGGTACGGGCAAGGAAGCGCTGATCTATCAGGCCGA
CACGCCGATCCAGAGCCAGTTCAAGGAACGCGGCACGCTCGACGACTGGCGGCGCGACGTCGCGGCCTACTGCGTCGGCA
ACAGCCGGCTGCTGTTCTGCGTCGCGACCGCCTTTGCTGGTTCGCTGCTGCACTTCTCCGGGCTCCAGTCGGGCGGCTTT
CACCTGCTCGGCACGACCTCCAAGGGCAAGTCGACGGGCGGCGTCATCGCCGCATCCGTGTTCGGCTCGCCGGACTACGT
GCGGAGCTGGAAGGCGACCGATAACGCCCTCGAAGCGGTCGCCACGCAGCACAGCGACGCACTGCTGATCCTCGATGAAA
TCGGGCAGGTCGAGCCGCGCTTGGTCGGCGACGTGATCTACATGCTCGCGAACGAGTCGGGCAAGGCGCGCGCGTCGCGT
AGCGGATCGGCAAAGCCGGTTCTCACGTGGCGGCTGCTGTTCCTGTCGAACGGCGAAAAGAGCGTGTCGGCGCTGATGGC
CGAGGCGAACAAGCCAATGAAGGGCGGCATCGAAGTGCGCTTGCCCGCGATCCCCGCCGAAGTGGGCGACATGGGCGTGG
TGGAGGAACTGCACGACTTCCCGACGCCTGCCGCGCTGATCGAGCATCTAGAGCGGCACGCGGGCCGGTATTACGGCACG
GCCGGGCCGGTGTTCATCGAGTTCGCATCCACGCAGGCGGATGAGCTGGCGGAACACCTGCGCACGCGCGTCGACGAGCT
GGTGACGGAATGGGTGCCGGACGGCGCGCATTCGCAGGTGGCGCGCGTCGCGAAACGCTTCTGCCTCGTCGCGGTGGCGG
GCGAACTGGCGACCGCGCACGGCCTGACCGGCTGGCCGGAGGGCGCGTCGGTCGACGCGGCGCGACGTTGCTTCGAGGGC
TGGATGGAACTGCGTGGCGGCGCGGGCAATTCGGACGAGGCGGAAGCGGTGCGGCAGGTGCTGCATTTCCTCGTCGCGCA
CGGCGACAATCGATTCGTGTGGATGAACCGCGCGCAGGACGACCACCGGCCGAACGTGCCGCATCGGGCGGGCTTCAAGC
AGCACGTGAAGCGCAACGAGCGCCGCACGGCGATCGCGTCCGATCGCGAGTATTACGCCGAGTTCGGCGGCAAGATGAGC
GCCGACGACGCCGAGCACGTCGAGACGGAATACCTGATCGAGGCGGCCGTGTTTCGCAAGGACGTGTGCGCCGGCTTCGA
TCACAAGATGGTCGCCAAGGCGTTGATGAAGCGCGGCGTGCTGATGCCGCGCAGCGACGGCTATCCGTATCGGCAGGAGT
ACATCCCCGGACACGGGAAATTCATGGTGTACCGCGTTCGTCCGTCGATCTTCACGCTCGAACTGTGA

Upstream 100 bases:

>100_bases
GGCCCGTCGGCATCATTCAATTCTTCGCGCGCCGGGCAAACGGCTTGCCGATATGGACTACTAATCGGATAGCTGGCCCG
CGCGCGTCCAATGGGAATTT

Downstream 100 bases:

>100_bases
GCCGCGCCGCCGCCGTGCGGGAAGCGGTGGCGGACATTCCTTTGCGCGCGATTTCGTGCCTGCATCAAAGCGGCCTTGAA
GAGCATGCACCAGACGGAAC

Product: hypothetical protein

Products: NA

Alternate protein names: Replication primase [H]

Number of amino acids: Translated: 955; Mature: 954

Protein sequence:

>955_residues
MSNAPMSEFERASVALGYVPADDRDTWRQAGMALKAEFGEEGFTLWNEWSQGAQNYNVRDARDVWKSFKGGKITINTLFH
LAKLGGFDPRAHRAMPIDPAQRERQHAERATREAAEMATLTEKQQAASALAESIWSTAEPAPADHPYLVRKRIPADALRV
YRGNLSIGTAACDGALVIPARDADGKLWTLEFILTDGQKRYLPNGRKAGCFALIGGAVSSVLLVGEGYATCATLAAATGY
PAAVAFDAGNLHAVATALRDQYPDARIVVCADDDHTTNGNPGVTKARAAADAVGGVVAVPDFGPNRPAAGTDFNDVAAHL
GPDAVAAAVRAALAVDGSPGSDKGKARPPVTKPAKRPKTARAQDGTWRFEVDDEGVWYHGFNNQGDPLPPHWISTRIDVI
AETRNEMSSEWGYLLEFTDRDGIQKRWAVPAGLFAGDGTELRRMLLDMGVKLGVTQTARTQIANYIQMARPDERVRCVPR
VGWHHGAFVLPDRVIGTGKEALIYQADTPIQSQFKERGTLDDWRRDVAAYCVGNSRLLFCVATAFAGSLLHFSGLQSGGF
HLLGTTSKGKSTGGVIAASVFGSPDYVRSWKATDNALEAVATQHSDALLILDEIGQVEPRLVGDVIYMLANESGKARASR
SGSAKPVLTWRLLFLSNGEKSVSALMAEANKPMKGGIEVRLPAIPAEVGDMGVVEELHDFPTPAALIEHLERHAGRYYGT
AGPVFIEFASTQADELAEHLRTRVDELVTEWVPDGAHSQVARVAKRFCLVAVAGELATAHGLTGWPEGASVDAARRCFEG
WMELRGGAGNSDEAEAVRQVLHFLVAHGDNRFVWMNRAQDDHRPNVPHRAGFKQHVKRNERRTAIASDREYYAEFGGKMS
ADDAEHVETEYLIEAAVFRKDVCAGFDHKMVAKALMKRGVLMPRSDGYPYRQEYIPGHGKFMVYRVRPSIFTLEL

Sequences:

>Translated_955_residues
MSNAPMSEFERASVALGYVPADDRDTWRQAGMALKAEFGEEGFTLWNEWSQGAQNYNVRDARDVWKSFKGGKITINTLFH
LAKLGGFDPRAHRAMPIDPAQRERQHAERATREAAEMATLTEKQQAASALAESIWSTAEPAPADHPYLVRKRIPADALRV
YRGNLSIGTAACDGALVIPARDADGKLWTLEFILTDGQKRYLPNGRKAGCFALIGGAVSSVLLVGEGYATCATLAAATGY
PAAVAFDAGNLHAVATALRDQYPDARIVVCADDDHTTNGNPGVTKARAAADAVGGVVAVPDFGPNRPAAGTDFNDVAAHL
GPDAVAAAVRAALAVDGSPGSDKGKARPPVTKPAKRPKTARAQDGTWRFEVDDEGVWYHGFNNQGDPLPPHWISTRIDVI
AETRNEMSSEWGYLLEFTDRDGIQKRWAVPAGLFAGDGTELRRMLLDMGVKLGVTQTARTQIANYIQMARPDERVRCVPR
VGWHHGAFVLPDRVIGTGKEALIYQADTPIQSQFKERGTLDDWRRDVAAYCVGNSRLLFCVATAFAGSLLHFSGLQSGGF
HLLGTTSKGKSTGGVIAASVFGSPDYVRSWKATDNALEAVATQHSDALLILDEIGQVEPRLVGDVIYMLANESGKARASR
SGSAKPVLTWRLLFLSNGEKSVSALMAEANKPMKGGIEVRLPAIPAEVGDMGVVEELHDFPTPAALIEHLERHAGRYYGT
AGPVFIEFASTQADELAEHLRTRVDELVTEWVPDGAHSQVARVAKRFCLVAVAGELATAHGLTGWPEGASVDAARRCFEG
WMELRGGAGNSDEAEAVRQVLHFLVAHGDNRFVWMNRAQDDHRPNVPHRAGFKQHVKRNERRTAIASDREYYAEFGGKMS
ADDAEHVETEYLIEAAVFRKDVCAGFDHKMVAKALMKRGVLMPRSDGYPYRQEYIPGHGKFMVYRVRPSIFTLEL
>Mature_954_residues
SNAPMSEFERASVALGYVPADDRDTWRQAGMALKAEFGEEGFTLWNEWSQGAQNYNVRDARDVWKSFKGGKITINTLFHL
AKLGGFDPRAHRAMPIDPAQRERQHAERATREAAEMATLTEKQQAASALAESIWSTAEPAPADHPYLVRKRIPADALRVY
RGNLSIGTAACDGALVIPARDADGKLWTLEFILTDGQKRYLPNGRKAGCFALIGGAVSSVLLVGEGYATCATLAAATGYP
AAVAFDAGNLHAVATALRDQYPDARIVVCADDDHTTNGNPGVTKARAAADAVGGVVAVPDFGPNRPAAGTDFNDVAAHLG
PDAVAAAVRAALAVDGSPGSDKGKARPPVTKPAKRPKTARAQDGTWRFEVDDEGVWYHGFNNQGDPLPPHWISTRIDVIA
ETRNEMSSEWGYLLEFTDRDGIQKRWAVPAGLFAGDGTELRRMLLDMGVKLGVTQTARTQIANYIQMARPDERVRCVPRV
GWHHGAFVLPDRVIGTGKEALIYQADTPIQSQFKERGTLDDWRRDVAAYCVGNSRLLFCVATAFAGSLLHFSGLQSGGFH
LLGTTSKGKSTGGVIAASVFGSPDYVRSWKATDNALEAVATQHSDALLILDEIGQVEPRLVGDVIYMLANESGKARASRS
GSAKPVLTWRLLFLSNGEKSVSALMAEANKPMKGGIEVRLPAIPAEVGDMGVVEELHDFPTPAALIEHLERHAGRYYGTA
GPVFIEFASTQADELAEHLRTRVDELVTEWVPDGAHSQVARVAKRFCLVAVAGELATAHGLTGWPEGASVDAARRCFEGW
MELRGGAGNSDEAEAVRQVLHFLVAHGDNRFVWMNRAQDDHRPNVPHRAGFKQHVKRNERRTAIASDREYYAEFGGKMSA
DDAEHVETEYLIEAAVFRKDVCAGFDHKMVAKALMKRGVLMPRSDGYPYRQEYIPGHGKFMVYRVRPSIFTLEL

Specific function: Required for autonomous replication in E.coli. Transferred into the recipient cell during bacterial conjugation. Catalyzes the synthesis of short oligoribonucleotide primers with CpA or pCpA at their 5'-termini on a single stranded template DNA [H]

COG id: COG5519

COG function: function code L; Superfamily II helicase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013610
- InterPro:   IPR006171 [H]

Pfam domain/function: PF08401 DUF1738; PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 103929; Mature: 103798

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNAPMSEFERASVALGYVPADDRDTWRQAGMALKAEFGEEGFTLWNEWSQGAQNYNVRD
CCCCCHHHHHHHHEEEEECCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHCCCCCCCCCH
ARDVWKSFKGGKITINTLFHLAKLGGFDPRAHRAMPIDPAQRERQHAERATREAAEMATL
HHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
TEKQQAASALAESIWSTAEPAPADHPYLVRKRIPADALRVYRGNLSIGTAACDGALVIPA
HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCHHHHHHHCCCCEEEEECCCCEEEEEC
RDADGKLWTLEFILTDGQKRYLPNGRKAGCFALIGGAVSSVLLVGEGYATCATLAAATGY
CCCCCCEEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHEEEECCCHHHHHHHHHHCCC
PAAVAFDAGNLHAVATALRDQYPDARIVVCADDDHTTNGNPGVTKARAAADAVGGVVAVP
CEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCEEECC
DFGPNRPAAGTDFNDVAAHLGPDAVAAAVRAALAVDGSPGSDKGKARPPVTKPAKRPKTA
CCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCC
RAQDGTWRFEVDDEGVWYHGFNNQGDPLPPHWISTRIDVIAETRNEMSSEWGYLLEFTDR
CCCCCEEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
DGIQKRWAVPAGLFAGDGTELRRMLLDMGVKLGVTQTARTQIANYIQMARPDERVRCVPR
CCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECC
VGWHHGAFVLPDRVIGTGKEALIYQADTPIQSQFKERGTLDDWRRDVAAYCVGNSRLLFC
CCCCCCCEECCCHHCCCCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHHHEECCCEEEEE
VATAFAGSLLHFSGLQSGGFHLLGTTSKGKSTGGVIAASVFGSPDYVRSWKATDNALEAV
EHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEEECCCHHHHHCCCCCHHHHHHH
ATQHSDALLILDEIGQVEPRLVGDVIYMLANESGKARASRSGSAKPVLTWRLLFLSNGEK
HHCCCCEEEEEHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCH
SVSALMAEANKPMKGGIEVRLPAIPAEVGDMGVVEELHDFPTPAALIEHLERHAGRYYGT
HHHHHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCC
AGPVFIEFASTQADELAEHLRTRVDELVTEWVPDGAHSQVARVAKRFCLVAVAGELATAH
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
GLTGWPEGASVDAARRCFEGWMELRGGAGNSDEAEAVRQVLHFLVAHGDNRFVWMNRAQD
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCC
DHRPNVPHRAGFKQHVKRNERRTAIASDREYYAEFGGKMSADDAEHVETEYLIEAAVFRK
CCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
DVCAGFDHKMVAKALMKRGVLMPRSDGYPYRQEYIPGHGKFMVYRVRPSIFTLEL
HHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCEEEEEC
>Mature Secondary Structure 
SNAPMSEFERASVALGYVPADDRDTWRQAGMALKAEFGEEGFTLWNEWSQGAQNYNVRD
CCCCHHHHHHHHEEEEECCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHCCCCCCCCCH
ARDVWKSFKGGKITINTLFHLAKLGGFDPRAHRAMPIDPAQRERQHAERATREAAEMATL
HHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
TEKQQAASALAESIWSTAEPAPADHPYLVRKRIPADALRVYRGNLSIGTAACDGALVIPA
HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCHHHHHHHCCCCEEEEECCCCEEEEEC
RDADGKLWTLEFILTDGQKRYLPNGRKAGCFALIGGAVSSVLLVGEGYATCATLAAATGY
CCCCCCEEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHEEEECCCHHHHHHHHHHCCC
PAAVAFDAGNLHAVATALRDQYPDARIVVCADDDHTTNGNPGVTKARAAADAVGGVVAVP
CEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCEEECC
DFGPNRPAAGTDFNDVAAHLGPDAVAAAVRAALAVDGSPGSDKGKARPPVTKPAKRPKTA
CCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCC
RAQDGTWRFEVDDEGVWYHGFNNQGDPLPPHWISTRIDVIAETRNEMSSEWGYLLEFTDR
CCCCCEEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
DGIQKRWAVPAGLFAGDGTELRRMLLDMGVKLGVTQTARTQIANYIQMARPDERVRCVPR
CCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECC
VGWHHGAFVLPDRVIGTGKEALIYQADTPIQSQFKERGTLDDWRRDVAAYCVGNSRLLFC
CCCCCCCEECCCHHCCCCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHHHEECCCEEEEE
VATAFAGSLLHFSGLQSGGFHLLGTTSKGKSTGGVIAASVFGSPDYVRSWKATDNALEAV
EHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEEECCCHHHHHCCCCCHHHHHHH
ATQHSDALLILDEIGQVEPRLVGDVIYMLANESGKARASRSGSAKPVLTWRLLFLSNGEK
HHCCCCEEEEEHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCH
SVSALMAEANKPMKGGIEVRLPAIPAEVGDMGVVEELHDFPTPAALIEHLERHAGRYYGT
HHHHHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCC
AGPVFIEFASTQADELAEHLRTRVDELVTEWVPDGAHSQVARVAKRFCLVAVAGELATAH
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
GLTGWPEGASVDAARRCFEGWMELRGGAGNSDEAEAVRQVLHFLVAHGDNRFVWMNRAQD
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCC
DHRPNVPHRAGFKQHVKRNERRTAIASDREYYAEFGGKMSADDAEHVETEYLIEAAVFRK
CCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
DVCAGFDHKMVAKALMKRGVLMPRSDGYPYRQEYIPGHGKFMVYRVRPSIFTLEL
HHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1818755 [H]