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The map label for this gene is cydB [H]

Identifier: 53721268

GI number: 53721268

Start: 318009

End: 319016

Strand: Reverse

Name: cydB [H]

Synonym: BPSS0234

Alternate gene names: 53721268

Gene position: 319016-318009 (Counterclockwise)

Preceding gene: 53721269

Following gene: 53721266

Centisome position: 10.05

GC content: 66.96

Gene sequence:

>1008_bases
ATGGATGTCACCGTAATCTGGGCCGCGATCATCGCACTCGGCCTGTTCATGTACGTCGTGCTCGACGGCTTCGACCTGGG
CATCGGCATCGTGTTTCCGTTCTTTCCCGCCGAACAGGAACGGGACCTGATGATGAACACCGTCGCGCCCGTGTGGGACG
GCAACGAGACGTGGCTCGTGCTCGGCGGCGCGGGGCTCTTCGCGGTGTTTCCGATCGTCTACTCGACCGTGCTCTCGGCG
CTGTATCTGCCGCTCGTGTTCATGCTCGTGTGCCTGATCTTTCGCGGCGTGTCGTTCGAGATCCGCGCGAAGGCGCGCCG
CACCAAGCACCTGTGGGATCTCGCGTTCATCGGCGGCTCGACGGGCGCGACGTTCTTCCAGGGCGTCGCGCTCGGCGCGT
TCCTGCAGGGCATTCCCGTCGACGGCGGCCGCTTCGCGGGCGACGCATTCGGCTGGCTCACGCCGTTCAGCCTGCTCACG
GGCCTGGGGCTCATCGCGACCTACGCGCTGCTCGGCTGCTGCTGGCTCGTCGCGAAAACGGAAGGCGACCTGCAACGGCG
GCTGCATCGCGTCGTGTGGCCGCTCACCGTCGTGCTGCTCGGCTTCATCGCGGTGGTGAGCCTCTGGACGCCGCTGCAGG
ACACGAACATCGCGCAGCGCTGGTTCGCCACGGGGCTGTTCTGGCGGCTGTTGCCGGTGCCGTTCCTCGTCGCCGGCTGC
GCGGCGCTGATGCGCCGCGCGGTGCGCGAGCGCCACGACACGACGCCGTTCGCGCTCGCGCTCGCGCTCGTGTTCCTCGG
CTACGTCGGGCTGCTCGCGAGCCTGTGGCCGTATGCGATTCCGCAGAGCGTGACGCTGTGGGAAGCCGCCGCGCCGCGTT
CGAGCCAGACGTTCACGCTGATCGGCGCGGCCGTCATCATTCCGGTCATCCTCGCGTACACGACGATGGGTTATTGGGTA
TTCCGCGGAAAGGTGCGTCATGAAGACCAGCATTACTACCACCACTGA

Upstream 100 bases:

>100_bases
CGCGGCCCGAGCGCACCGCCCGGCGCCCGCTGTCGGCCGCGAACCAGTTGATCGACGCCGCGTGAAGCCGGCGCGCCACC
AAGCCAAGCGAGGTTAGCAA

Downstream 100 bases:

>100_bases
GCCGCGCGCCGTCGCGCGCGGCGCGCGGCTGCCGGGCTGGATGTGGTTCGCGCTGCTGTGGATGGGCGGCGTCGCGGGCG
CGGTGACGCTCGGTTACGCG

Product: cytochrome oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MDVTVIWAAIIALGLFMYVVLDGFDLGIGIVFPFFPAEQERDLMMNTVAPVWDGNETWLVLGGAGLFAVFPIVYSTVLSA
LYLPLVFMLVCLIFRGVSFEIRAKARRTKHLWDLAFIGGSTGATFFQGVALGAFLQGIPVDGGRFAGDAFGWLTPFSLLT
GLGLIATYALLGCCWLVAKTEGDLQRRLHRVVWPLTVVLLGFIAVVSLWTPLQDTNIAQRWFATGLFWRLLPVPFLVAGC
AALMRRAVRERHDTTPFALALALVFLGYVGLLASLWPYAIPQSVTLWEAAAPRSSQTFTLIGAAVIIPVILAYTTMGYWV
FRGKVRHEDQHYYHH

Sequences:

>Translated_335_residues
MDVTVIWAAIIALGLFMYVVLDGFDLGIGIVFPFFPAEQERDLMMNTVAPVWDGNETWLVLGGAGLFAVFPIVYSTVLSA
LYLPLVFMLVCLIFRGVSFEIRAKARRTKHLWDLAFIGGSTGATFFQGVALGAFLQGIPVDGGRFAGDAFGWLTPFSLLT
GLGLIATYALLGCCWLVAKTEGDLQRRLHRVVWPLTVVLLGFIAVVSLWTPLQDTNIAQRWFATGLFWRLLPVPFLVAGC
AALMRRAVRERHDTTPFALALALVFLGYVGLLASLWPYAIPQSVTLWEAAAPRSSQTFTLIGAAVIIPVILAYTTMGYWV
FRGKVRHEDQHYYHH
>Mature_335_residues
MDVTVIWAAIIALGLFMYVVLDGFDLGIGIVFPFFPAEQERDLMMNTVAPVWDGNETWLVLGGAGLFAVFPIVYSTVLSA
LYLPLVFMLVCLIFRGVSFEIRAKARRTKHLWDLAFIGGSTGATFFQGVALGAFLQGIPVDGGRFAGDAFGWLTPFSLLT
GLGLIATYALLGCCWLVAKTEGDLQRRLHRVVWPLTVVLLGFIAVVSLWTPLQDTNIAQRWFATGLFWRLLPVPFLVAGC
AALMRRAVRERHDTTPFALALALVFLGYVGLLASLWPYAIPQSVTLWEAAAPRSSQTFTLIGAAVIIPVILAYTTMGYWV
FRGKVRHEDQHYYHH

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=372, Percent_Identity=27.6881720430108, Blast_Score=141, Evalue=6e-35,
Organism=Escherichia coli, GI1787213, Length=369, Percent_Identity=28.1842818428184, Blast_Score=120, Evalue=9e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37062; Mature: 37062

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVTVIWAAIIALGLFMYVVLDGFDLGIGIVFPFFPAEQERDLMMNTVAPVWDGNETWLV
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHHHCCCCCCCCCEEEE
LGGAGLFAVFPIVYSTVLSALYLPLVFMLVCLIFRGVSFEIRAKARRTKHLWDLAFIGGS
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHEECCC
TGATFFQGVALGAFLQGIPVDGGRFAGDAFGWLTPFSLLTGLGLIATYALLGCCWLVAKT
CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
EGDLQRRLHRVVWPLTVVLLGFIAVVSLWTPLQDTNIAQRWFATGLFWRLLPVPFLVAGC
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AALMRRAVRERHDTTPFALALALVFLGYVGLLASLWPYAIPQSVTLWEAAAPRSSQTFTL
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHH
IGAAVIIPVILAYTTMGYWVFRGKVRHEDQHYYHH
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MDVTVIWAAIIALGLFMYVVLDGFDLGIGIVFPFFPAEQERDLMMNTVAPVWDGNETWLV
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHHHCCCCCCCCCEEEE
LGGAGLFAVFPIVYSTVLSALYLPLVFMLVCLIFRGVSFEIRAKARRTKHLWDLAFIGGS
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHEECCC
TGATFFQGVALGAFLQGIPVDGGRFAGDAFGWLTPFSLLTGLGLIATYALLGCCWLVAKT
CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
EGDLQRRLHRVVWPLTVVLLGFIAVVSLWTPLQDTNIAQRWFATGLFWRLLPVPFLVAGC
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AALMRRAVRERHDTTPFALALALVFLGYVGLLASLWPYAIPQSVTLWEAAAPRSSQTFTL
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHH
IGAAVIIPVILAYTTMGYWVFRGKVRHEDQHYYHH
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]