Click here to switch to the map view.

The map label for this gene is 53721206

Identifier: 53721206

GI number: 53721206

Start: 228224

End: 228736

Strand: Reverse

Name: 53721206

Synonym: BPSS0170

Alternate gene names: NA

Gene position: 228736-228224 (Counterclockwise)

Preceding gene: 53721207

Following gene: 53721205

Centisome position: 7.21

GC content: 71.15

Gene sequence:

>513_bases
GTGCCTCGAATGCATCCGACCACCCCCGTTGCCGCCGTCGCGCTCGCGCTCGCGTGCGCCGCGTGCGCGAGCGGCGCGGC
CAAGCAGAAGGAGCCGCTGCGGCTCGAGCTCGCCGTGCGCGCCGCGCCCACGGTCAATCCGGACGATCGGAGCCGGCCGG
CTCCGATCGTCGTGAGCGTCTACGAGCTGAAGACCGACGGCGCATTCAACGCCGCCGATTTCTTCACGCTGCAGGGCCCG
GACAAGACCGTGCTCGCCGACGATCTGCTCGCGCGCGAGCGTTTTCAACTGCGCCCCGGCGAGCGCCGCGTGATCCGGCG
CGACGCCGATCCGGCGGCGGGCGCGCTCGGCGTCGTCGCCGCGTACCGCGATCTGCCGAACTCGGTGTGGCGCGCGGCAT
ATCCGCTGCCGCCCGCGCGGGACGCCGCATGGTATCGCTTCTCGTCGCCGAAGCTGAAGCTGACCATCGAGCTCGACACG
CACGCGATCAGGATCACCGAACCCGGAAAATGA

Upstream 100 bases:

>100_bases
TGAGCGGCGCCCGCGCGGGGCCCGCCGAGCGGCGCGCGGCAGAGCGCCGTTCGCCGGGCCCGCGCCGCCCTCGGCCGGTT
CTCCCCCTCACACCCAACGC

Downstream 100 bases:

>100_bases
CATGCACGGCGGACCGAAACCATGAGCTGGCATAACAAGGTCGTCTGGAGCGAGGGGCTTTTCATGCGCCCGCAGCTGTT
CCAGCAGCAGGAGCGCTATC

Product: lipoprotein

Products: NA

Alternate protein names: Type VI Secretion Lipoprotein; Type VI Secretion Lipoprotein/VasD; SciN Protein; Replication/Virulence Associated Protein; Type VI Secretion System Protein VasD; Outer Membrane Lipoprotein; Type VI Secretion System Protein Vasd; Type VI Secretion Protein VasD

Number of amino acids: Translated: 170; Mature: 169

Protein sequence:

>170_residues
MPRMHPTTPVAAVALALACAACASGAAKQKEPLRLELAVRAAPTVNPDDRSRPAPIVVSVYELKTDGAFNAADFFTLQGP
DKTVLADDLLARERFQLRPGERRVIRRDADPAAGALGVVAAYRDLPNSVWRAAYPLPPARDAAWYRFSSPKLKLTIELDT
HAIRITEPGK

Sequences:

>Translated_170_residues
MPRMHPTTPVAAVALALACAACASGAAKQKEPLRLELAVRAAPTVNPDDRSRPAPIVVSVYELKTDGAFNAADFFTLQGP
DKTVLADDLLARERFQLRPGERRVIRRDADPAAGALGVVAAYRDLPNSVWRAAYPLPPARDAAWYRFSSPKLKLTIELDT
HAIRITEPGK
>Mature_169_residues
PRMHPTTPVAAVALALACAACASGAAKQKEPLRLELAVRAAPTVNPDDRSRPAPIVVSVYELKTDGAFNAADFFTLQGPD
KTVLADDLLARERFQLRPGERRVIRRDADPAAGALGVVAAYRDLPNSVWRAAYPLPPARDAAWYRFSSPKLKLTIELDTH
AIRITEPGK

Specific function: Unknown

COG id: COG3521

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18451; Mature: 18320

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRMHPTTPVAAVALALACAACASGAAKQKEPLRLELAVRAAPTVNPDDRSRPAPIVVSV
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEE
YELKTDGAFNAADFFTLQGPDKTVLADDLLARERFQLRPGERRVIRRDADPAAGALGVVA
EEEECCCCCCCCEEEEECCCCCEEHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHH
AYRDLPNSVWRAAYPLPPARDAAWYRFSSPKLKLTIELDTHAIRITEPGK
HHHHCCHHHHHHCCCCCCCCCCEEEEECCCCEEEEEEECCEEEEEECCCC
>Mature Secondary Structure 
PRMHPTTPVAAVALALACAACASGAAKQKEPLRLELAVRAAPTVNPDDRSRPAPIVVSV
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEE
YELKTDGAFNAADFFTLQGPDKTVLADDLLARERFQLRPGERRVIRRDADPAAGALGVVA
EEEECCCCCCCCEEEEECCCCCEEHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHH
AYRDLPNSVWRAAYPLPPARDAAWYRFSSPKLKLTIELDTHAIRITEPGK
HHHHCCHHHHHHCCCCCCCCCCEEEEECCCCEEEEEEECCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA