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The map label for this gene is 53720716

Identifier: 53720716

GI number: 53720716

Start: 3712724

End: 3713242

Strand: Reverse

Name: 53720716

Synonym: BPSL3107

Alternate gene names: NA

Gene position: 3713242-3712724 (Counterclockwise)

Preceding gene: 53720717

Following gene: 53720715

Centisome position: 91.13

GC content: 63.01

Gene sequence:

>519_bases
ATGGCGAAGAAAGAAAGCATTCAAAAGCGCTTGCAGAAAGTGCGGCCGCCCCGCGTCCAGTTGACGTACGAGGTCGAACG
GGGCGATGCGATCGAGATCAAGGAGCTGCCGTTCGTCGTCGGGGTCGTCGGCGATCTGGCGGGGCAGTCCGAAATCGAGC
AGCCGAAGCTGCGCGATCGCAAGTTCGTCAACATCGACCGCGACAACTTCGATGACGTGATGAAGGCGATCGAGCCGCGC
GCGACGTTCCAGGTGGAGAACCGCCTGAGCGAGGCGGGCGGCAAGTTCGCGGTCGACCTGAAGTTCCGCTCGATCAACGA
TTTCAATCCGGACGAAGTCGTCGGGCAGGTCGAGCCGCTGCGCCGCCTGCTCGAGGCGCGCTCGAAGCTCGCGGACCTGC
GCAACAAACTGGCCGGCAACGACAAGCTCGAAGACCTGCTGAGCGAAGTGCTGTCGAACACGCAGCAGCTCGAAGCGCTG
AAGAAGAGCGCGGACGGCGGCGACAAGCAGGGCGAATGA

Upstream 100 bases:

>100_bases
CGCCACGCCGGCGCCGGCGCCCGCGAAGGCGGCAGGCGGCGATCCGTTCAGCGCACTGCGTTAAGCCGCGCGCGATCCAC
ACACTCACCGGGAGCCGTCG

Downstream 100 bases:

>100_bases
GTAACGGGGGGGTGAAATGAACCAGCAAACGGCTGCGGCCCAATCCACCGGCGTTCAAGCCGGCACGGAATCCTCGCTGC
TCGACGAGATCGTCGAGAAG

Product: hypothetical protein

Products: NA

Alternate protein names: Cytoplasmic Protein; T6ss S; Protein ImpB; Type VI Secretion Protein Family; Conserved Protein; Cytoplasmic Protein SciH; Type VI Secretion Protein VasQ; Type VI Secretion System Protein; Type VI Secretion; Type VI Secretion System Core Protein

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MAKKESIQKRLQKVRPPRVQLTYEVERGDAIEIKELPFVVGVVGDLAGQSEIEQPKLRDRKFVNIDRDNFDDVMKAIEPR
ATFQVENRLSEAGGKFAVDLKFRSINDFNPDEVVGQVEPLRRLLEARSKLADLRNKLAGNDKLEDLLSEVLSNTQQLEAL
KKSADGGDKQGE

Sequences:

>Translated_172_residues
MAKKESIQKRLQKVRPPRVQLTYEVERGDAIEIKELPFVVGVVGDLAGQSEIEQPKLRDRKFVNIDRDNFDDVMKAIEPR
ATFQVENRLSEAGGKFAVDLKFRSINDFNPDEVVGQVEPLRRLLEARSKLADLRNKLAGNDKLEDLLSEVLSNTQQLEAL
KKSADGGDKQGE
>Mature_171_residues
AKKESIQKRLQKVRPPRVQLTYEVERGDAIEIKELPFVVGVVGDLAGQSEIEQPKLRDRKFVNIDRDNFDDVMKAIEPRA
TFQVENRLSEAGGKFAVDLKFRSINDFNPDEVVGQVEPLRRLLEARSKLADLRNKLAGNDKLEDLLSEVLSNTQQLEALK
KSADGGDKQGE

Specific function: Unknown

COG id: COG3516

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19416; Mature: 19285

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKESIQKRLQKVRPPRVQLTYEVERGDAIEIKELPFVVGVVGDLAGQSEIEQPKLRDR
CCCHHHHHHHHHHCCCCCEEEEEEECCCCEEEHHHCCHHHHHHHHHCCCCCCCCCCCCCC
KFVNIDRDNFDDVMKAIEPRATFQVENRLSEAGGKFAVDLKFRSINDFNPDEVVGQVEPL
CEECCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHH
RRLLEARSKLADLRNKLAGNDKLEDLLSEVLSNTQQLEALKKSADGGDKQGE
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
AKKESIQKRLQKVRPPRVQLTYEVERGDAIEIKELPFVVGVVGDLAGQSEIEQPKLRDR
CCHHHHHHHHHHCCCCCEEEEEEECCCCEEEHHHCCHHHHHHHHHCCCCCCCCCCCCCC
KFVNIDRDNFDDVMKAIEPRATFQVENRLSEAGGKFAVDLKFRSINDFNPDEVVGQVEPL
CEECCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHH
RRLLEARSKLADLRNKLAGNDKLEDLLSEVLSNTQQLEALKKSADGGDKQGE
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA