Click here to switch to the map view.

The map label for this gene is wbiB [C]

Identifier: 53720289

GI number: 53720289

Start: 3206025

End: 3207116

Strand: Reverse

Name: wbiB [C]

Synonym: BPSL2679

Alternate gene names: 53720289

Gene position: 3207116-3206025 (Counterclockwise)

Preceding gene: 53720290

Following gene: 53720288

Centisome position: 78.71

GC content: 60.71

Gene sequence:

>1092_bases
ATGAGCGACGTGAATGCAAGCTTGGTTGACGGGAAAAAGATCCTCGTGACCGGTGGGGCTGGCTTTATCGGCTGCGCGAT
ATCGGAGCGACTCGCAGCGCGTGCAAGCCGCTACGTCGTAATGGACAACTTGCATCCGCAGATCCATGCGAGCGCGGTTC
GTCCTGGCGCGCTTCACGAGAAAGCGGAACTCGTCGTTGCCGACGTCACGGACGCCGGTGCATGGGATGCGCTGCTGAGC
GATTTTCAACCGGAAATCATCATACATCTGGCCGCCGAAACGGGCACGGGCCAATCGCTGACGGAAGCGAGTCGGCATGC
GCTCGTCAACGTCGTCGGCACCACGCGGCTGACGGACGCGCTCGTCAAGCACGGCATCGTGGTCGAGCACATTCTGCTGA
CGAGCAGCCGCGCGGTCTATGGCGAAGGGGCATGGCAGAAGGACGATGGCACGATCGTTTATCCCGGCCAACGCGGGCGC
GCCCAGCTCGAGGCTGCGCAATGGGACTTCCCGGGGATGACGATGCTGCCTTCGCGTGCGGACCGTACCGAGCCGCGGCC
GACGAGCGTCTATGGTGCAACGAAGCTCGCGCAGGAACACGTACTGCGTGCATGGTCGCTCGCAACGAAAACGCCGCTGT
CGATTTTGCGTCTGCAGAACGTTTATGGCCCGGGTCAATCGTTGACTAACTCCTATACCGGCATCGTCGCGCTTTTCTCT
CGGCTTGCTCGCGAAAAGAAGGTGATTCCGCTCTATGAAGACGGCAATGTGACGCGCGATTTTGTCAGTATCGACGATGT
GGCGGACGCCATTGTCGCGACGTTGGCGCGCACGCCGGAAGCACTCTCTCTTTTCGATATCGGCTCCGGACAGGCGACGA
GCATTCTCGATATGGCTCGAATCATCGCGGCGCATTACGGCGCTCCCGAACCGCAGATCAACGGTGCATTCCGCGACGGA
GATGTACGACACGCGGCGTGCGACTTGAGCGAATCGTTGGCGAACCTTGGATGGAAGCCGCAGTGGTCGCTCAAACGCGG
GATCGGCGAATTGCAGACCTGGATCGCGCAAGAGCTTGATCGCAAGAACTAG

Upstream 100 bases:

>100_bases
ATCTGATCGAGAAACGCGCCCTGGCGCTGAAGGATTGGGGGCCCGGACAAGGATGGAAGTACTGTTTGGCTAGATTGACT
ATGAAGAAAGAGGGAGTGTG

Downstream 100 bases:

>100_bases
TCATACATCAGAGGTTACAAGTGCCACTGCACGATACGACAATCACCGGTCCCGCGTCCCTGCGGATTCAGTCGGTCCTG
TATAACAACAGTCAGCAGCA

Product: putative epimerase/dehydratase

Products: NA

Alternate protein names: Galactowaldenase; UDP-galactose 4-epimerase [H]

Number of amino acids: Translated: 363; Mature: 362

Protein sequence:

>363_residues
MSDVNASLVDGKKILVTGGAGFIGCAISERLAARASRYVVMDNLHPQIHASAVRPGALHEKAELVVADVTDAGAWDALLS
DFQPEIIIHLAAETGTGQSLTEASRHALVNVVGTTRLTDALVKHGIVVEHILLTSSRAVYGEGAWQKDDGTIVYPGQRGR
AQLEAAQWDFPGMTMLPSRADRTEPRPTSVYGATKLAQEHVLRAWSLATKTPLSILRLQNVYGPGQSLTNSYTGIVALFS
RLAREKKVIPLYEDGNVTRDFVSIDDVADAIVATLARTPEALSLFDIGSGQATSILDMARIIAAHYGAPEPQINGAFRDG
DVRHAACDLSESLANLGWKPQWSLKRGIGELQTWIAQELDRKN

Sequences:

>Translated_363_residues
MSDVNASLVDGKKILVTGGAGFIGCAISERLAARASRYVVMDNLHPQIHASAVRPGALHEKAELVVADVTDAGAWDALLS
DFQPEIIIHLAAETGTGQSLTEASRHALVNVVGTTRLTDALVKHGIVVEHILLTSSRAVYGEGAWQKDDGTIVYPGQRGR
AQLEAAQWDFPGMTMLPSRADRTEPRPTSVYGATKLAQEHVLRAWSLATKTPLSILRLQNVYGPGQSLTNSYTGIVALFS
RLAREKKVIPLYEDGNVTRDFVSIDDVADAIVATLARTPEALSLFDIGSGQATSILDMARIIAAHYGAPEPQINGAFRDG
DVRHAACDLSESLANLGWKPQWSLKRGIGELQTWIAQELDRKN
>Mature_362_residues
SDVNASLVDGKKILVTGGAGFIGCAISERLAARASRYVVMDNLHPQIHASAVRPGALHEKAELVVADVTDAGAWDALLSD
FQPEIIIHLAAETGTGQSLTEASRHALVNVVGTTRLTDALVKHGIVVEHILLTSSRAVYGEGAWQKDDGTIVYPGQRGRA
QLEAAQWDFPGMTMLPSRADRTEPRPTSVYGATKLAQEHVLRAWSLATKTPLSILRLQNVYGPGQSLTNSYTGIVALFSR
LAREKKVIPLYEDGNVTRDFVSIDDVADAIVATLARTPEALSLFDIGSGQATSILDMARIIAAHYGAPEPQINGAFRDGD
VRHAACDLSESLANLGWKPQWSLKRGIGELQTWIAQELDRKN

Specific function: DTDP-L-RHAMNOSE BIOSYNTHESIS WITHIN THE O ANTIGEN BIOSYNTHESIS PATHWAY OF LIPOPOLYSACCHARIDE BIOSYNTHESIS. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family [H]

Homologues:

Organism=Homo sapiens, GI56237023, Length=371, Percent_Identity=26.1455525606469, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI56118217, Length=371, Percent_Identity=26.1455525606469, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI189083684, Length=371, Percent_Identity=26.1455525606469, Blast_Score=97, Evalue=2e-20,
Organism=Escherichia coli, GI1788353, Length=361, Percent_Identity=26.8698060941828, Blast_Score=103, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI115532424, Length=351, Percent_Identity=21.6524216524217, Blast_Score=74, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6319493, Length=368, Percent_Identity=23.6413043478261, Blast_Score=77, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: =5.1.3.2 [H]

Molecular weight: Translated: 39148; Mature: 39017

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDVNASLVDGKKILVTGGAGFIGCAISERLAARASRYVVMDNLHPQIHASAVRPGALHE
CCCCCCEEECCCEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCCCCCCCC
KAELVVADVTDAGAWDALLSDFQPEIIIHLAAETGTGQSLTEASRHALVNVVGTTRLTDA
CCEEEEEECCCCCHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
LVKHGIVVEHILLTSSRAVYGEGAWQKDDGTIVYPGQRGRAQLEAAQWDFPGMTMLPSRA
HHHCCHHHHHHHHHCCCEEECCCCEECCCCEEEECCCCCCCHHHHHCCCCCCCEECCCCC
DRTEPRPTSVYGATKLAQEHVLRAWSLATKTPLSILRLQNVYGPGQSLTNSYTGIVALFS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
RLAREKKVIPLYEDGNVTRDFVSIDDVADAIVATLARTPEALSLFDIGSGQATSILDMAR
HHHHCCCCEEEECCCCCEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH
IIAAHYGAPEPQINGAFRDGDVRHAACDLSESLANLGWKPQWSLKRGIGELQTWIAQELD
HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
RKN
CCC
>Mature Secondary Structure 
SDVNASLVDGKKILVTGGAGFIGCAISERLAARASRYVVMDNLHPQIHASAVRPGALHE
CCCCCEEECCCEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCCCCCCCC
KAELVVADVTDAGAWDALLSDFQPEIIIHLAAETGTGQSLTEASRHALVNVVGTTRLTDA
CCEEEEEECCCCCHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
LVKHGIVVEHILLTSSRAVYGEGAWQKDDGTIVYPGQRGRAQLEAAQWDFPGMTMLPSRA
HHHCCHHHHHHHHHCCCEEECCCCEECCCCEEEECCCCCCCHHHHHCCCCCCCEECCCCC
DRTEPRPTSVYGATKLAQEHVLRAWSLATKTPLSILRLQNVYGPGQSLTNSYTGIVALFS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
RLAREKKVIPLYEDGNVTRDFVSIDDVADAIVATLARTPEALSLFDIGSGQATSILDMAR
HHHHCCCCEEEECCCCCEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH
IIAAHYGAPEPQINGAFRDGDVRHAACDLSESLANLGWKPQWSLKRGIGELQTWIAQELD
HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
RKN
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]