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The map label for this gene is rarA [H]

Identifier: 53720212

GI number: 53720212

Start: 3121078

End: 3122445

Strand: Reverse

Name: rarA [H]

Synonym: BPSL2602

Alternate gene names: 53720212

Gene position: 3122445-3121078 (Counterclockwise)

Preceding gene: 53720213

Following gene: 53720210

Centisome position: 76.63

GC content: 68.93

Gene sequence:

>1368_bases
ATGTCCGGTCCGGCGGCGAATGCGCGCCGCCACCGTTTTTCGTGGGAGCCAAGGTCCATGTCCGACCTGTTTGCAGTCGA
ACCGCGCCGGCCGCTCGCCGAGGCGCTGCGCCCGAAGACGCTCGCCGACGTGATCGGGCAGACGCATCTTCTCGGCGAAG
GCAAGCCGCTCAGGCTCGCGTTCGAATCGGGCAAGCCGCATTCGATGATCCTCTGGGGGCCGCCCGGCGTCGGCAAGACG
ACGCTCGCGCGCCTGACCGCGCTCGCATTCGATTGCGAGTTCATCGCGCTCTCGGCGGTGCTGGGCGGCGTGAAGGACAT
CCGCGAGGCGATGGAGCAGGCGCGCGACACGCTGAACCGCACCGGCCGCCACACGATCCTGTTCGTCGACGAAATCCATC
GCTTCAACAAGGCGCAGCAGGACGCGCTGCTGCCGTTCGTCGAATCGGGGCTCGTCACGTTCATCGGCGCGACGACCGAG
AACCCGAGCTTCGAGGTGAATTCGGCGCTGCTGTCGCGCGCGCAGGTGTACGTGCTGAAGTCGCTCGCGGAAGACGAACT
GCGCCAGTTGCTCAAGCGCGCGCAGGACGTGGCGCTCGGCGGGCTCGCGTTCGACGACAAGGCGGTCGACACGCTCGTCG
GCTACGCGGACGGCGACGCGCGGCGCTTCCTGAACCTGCTCGAGCAGGCGCAGACGGCGGCTTCGTCCGCGGGCGTGACG
ACGATCGACGCGGCGTTCGTCGAGAGCGCGATGACGATGAACGCGCGCCGCTTCGACAAGGGCGGCGACAACTTCTACGA
CCAGATCTCCGCGCTGCACAAGTCGGTGCGCGGCTCGAGCCCGGACGGCGCGCTGTACTGGCTGTGCCGGATGCTCGACG
GCGGCGCGGACCCGAAATACCTCGCGCGGCGCGTCGTGCGCATGGCGTGGGAGGACATCGGCCTGGCCGATCCGCGCGCG
ATGCAGATCGCGAACGATGCGGCGCAGACCTACGAACGGCTCGGCTCGCCGGAGGGCGAGCTCGCGCTCGCGCAGGCGGT
GCTCTATCTCGCGTGCGCGGCGAAGAGCAACGCCGGCTACAACGCGTACAACGAGGCGATGGCGTTCGTGCGGCAGGACA
AGTCGCGCGAGGTGCCGGTGCATTTGCGCAACGCGCCGACGAAGCTGATGAAGGAGCTCGGCTACGGCCACGCGTACCGT
TACGCGCACGACGAGCCGAACGCCTATGCGGCGGGCGAGACGTACTTGCCGGACGGCATGCGCGAGCCGCGCTGGTACAG
GCCGGTGCCGCGCGGGCTCGAGACGAAGATCGCCGACAAGCTTGCGTGGCTGCGCGAGCTCGACCGCGACGCGGGCAAGA
ACGACTAG

Upstream 100 bases:

>100_bases
CCCGCCAGCGATGGCGGGCCCGTTCGTTTCGGCGCGCCGCTTCGCGGCCCCGCGCCGCCGCGCGGGGCGCGGCGTGGCAT
CGGGCGGCGCGGCTGTCATA

Downstream 100 bases:

>100_bases
CGGCGCCGACGCGGGTGGCGGCCGTCGCCGTCCGTCGGTTCAGCGCTTGCGCACCGGCGTCTTCTTCCAGTAGCCGAACG
GCGCCTGATGGCAGTCGATG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 454

Protein sequence:

>455_residues
MSGPAANARRHRFSWEPRSMSDLFAVEPRRPLAEALRPKTLADVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGKT
TLARLTALAFDCEFIALSAVLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVESGLVTFIGATTE
NPSFEVNSALLSRAQVYVLKSLAEDELRQLLKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVT
TIDAAFVESAMTMNARRFDKGGDNFYDQISALHKSVRGSSPDGALYWLCRMLDGGADPKYLARRVVRMAWEDIGLADPRA
MQIANDAAQTYERLGSPEGELALAQAVLYLACAAKSNAGYNAYNEAMAFVRQDKSREVPVHLRNAPTKLMKELGYGHAYR
YAHDEPNAYAAGETYLPDGMREPRWYRPVPRGLETKIADKLAWLRELDRDAGKND

Sequences:

>Translated_455_residues
MSGPAANARRHRFSWEPRSMSDLFAVEPRRPLAEALRPKTLADVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGKT
TLARLTALAFDCEFIALSAVLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVESGLVTFIGATTE
NPSFEVNSALLSRAQVYVLKSLAEDELRQLLKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVT
TIDAAFVESAMTMNARRFDKGGDNFYDQISALHKSVRGSSPDGALYWLCRMLDGGADPKYLARRVVRMAWEDIGLADPRA
MQIANDAAQTYERLGSPEGELALAQAVLYLACAAKSNAGYNAYNEAMAFVRQDKSREVPVHLRNAPTKLMKELGYGHAYR
YAHDEPNAYAAGETYLPDGMREPRWYRPVPRGLETKIADKLAWLRELDRDAGKND
>Mature_454_residues
SGPAANARRHRFSWEPRSMSDLFAVEPRRPLAEALRPKTLADVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGKTT
LARLTALAFDCEFIALSAVLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVESGLVTFIGATTEN
PSFEVNSALLSRAQVYVLKSLAEDELRQLLKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTT
IDAAFVESAMTMNARRFDKGGDNFYDQISALHKSVRGSSPDGALYWLCRMLDGGADPKYLARRVVRMAWEDIGLADPRAM
QIANDAAQTYERLGSPEGELALAQAVLYLACAAKSNAGYNAYNEAMAFVRQDKSREVPVHLRNAPTKLMKELGYGHAYRY
AHDEPNAYAAGETYLPDGMREPRWYRPVPRGLETKIADKLAWLRELDRDAGKND

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=436, Percent_Identity=44.0366972477064, Blast_Score=325, Evalue=4e-89,
Organism=Homo sapiens, GI18426904, Length=436, Percent_Identity=40.1376146788991, Blast_Score=274, Evalue=1e-73,
Organism=Escherichia coli, GI1787119, Length=442, Percent_Identity=54.0723981900452, Blast_Score=456, Evalue=1e-129,
Organism=Escherichia coli, GI1786676, Length=267, Percent_Identity=30.3370786516854, Blast_Score=79, Evalue=5e-16,
Organism=Saccharomyces cerevisiae, GI6324111, Length=430, Percent_Identity=41.1627906976744, Blast_Score=293, Evalue=4e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 50186; Mature: 50055

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGPAANARRHRFSWEPRSMSDLFAVEPRRPLAEALRPKTLADVIGQTHLLGEGKPLRLA
CCCCCCCCHHCCCCCCCCCCCHHHCCCCCCHHHHHHCCHHHHHHHCCHHCCCCCCCEEEE
FESGKPHSMILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMEQARDTLNR
EECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
TGRHTILFVDEIHRFNKAQQDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLK
CCCEEEEEHHHHHHHCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH
SLAEDELRQLLKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVT
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCH
TIDAAFVESAMTMNARRFDKGGDNFYDQISALHKSVRGSSPDGALYWLCRMLDGGADPKY
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHH
LARRVVRMAWEDIGLADPRAMQIANDAAQTYERLGSPEGELALAQAVLYLACAAKSNAGY
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
NAYNEAMAFVRQDKSREVPVHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLPDGM
CHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHCCCCCEEEECCCCCCCEECCCCCCCCCC
REPRWYRPVPRGLETKIADKLAWLRELDRDAGKND
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SGPAANARRHRFSWEPRSMSDLFAVEPRRPLAEALRPKTLADVIGQTHLLGEGKPLRLA
CCCCCCCHHCCCCCCCCCCCHHHCCCCCCHHHHHHCCHHHHHHHCCHHCCCCCCCEEEE
FESGKPHSMILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMEQARDTLNR
EECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
TGRHTILFVDEIHRFNKAQQDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLK
CCCEEEEEHHHHHHHCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH
SLAEDELRQLLKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVT
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCH
TIDAAFVESAMTMNARRFDKGGDNFYDQISALHKSVRGSSPDGALYWLCRMLDGGADPKY
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHH
LARRVVRMAWEDIGLADPRAMQIANDAAQTYERLGSPEGELALAQAVLYLACAAKSNAGY
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
NAYNEAMAFVRQDKSREVPVHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLPDGM
CHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHCCCCCEEEECCCCCCCEECCCCCCCCCC
REPRWYRPVPRGLETKIADKLAWLRELDRDAGKND
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]