Click here to switch to the map view.

The map label for this gene is intZ [H]

Identifier: 53720197

GI number: 53720197

Start: 3105703

End: 3106971

Strand: Reverse

Name: intZ [H]

Synonym: BPSL2586

Alternate gene names: 53720197

Gene position: 3106971-3105703 (Counterclockwise)

Preceding gene: 53720198

Following gene: 53720196

Centisome position: 76.25

GC content: 65.09

Gene sequence:

>1269_bases
ATGGGGGTTGAGATGATAACCGAGGCGAAGCGAAAGATCCATCGACTGTCTGCGATCGGTGTGGAGAAGGCCAAGGCGCC
TGGCTATCTGGGCGACGGCGGAGGCCTGTACCTCCAGGTGTCTCCCAGCCTCACCAAGTCGTGGATTTTCCGGTTCAAGC
TGCACGGGCGGTCGCGCGAGATGGGCCTGGGGCCATATACGGCGCTCAGCTTGGCGGAGGCGCGCAAGCGCGCCGAGGAC
TGTCGCCGCCTGTTGCTCGATGGCGTCGATCCGATCGAGGCGCGCAAGGGAGATCGCCTTCAGCAAAAGCTGCAGGTGGC
GCGATCCATGACATTCGCCGATTGTGCGTCGACCTACATCGCGGCGCACCGAGACGCCTGGAAGAACGCGAAGCACGCGC
AGCAGTGGGAGAACACGATCGAGACGTACGCCAACCCGGTGATCGGCAAGCTGCCCATCCAAGACGTCGACACGAACCTG
GTCGTGCGCATCCTCGATCCGATCTGGAGGGAAAAGCCGGAAACGGCAAGCCGGCTGCGCGGCCGCATTGAAGCGATCCT
GAACTGGGCGAAGACGCGCGAGCTTAGGAGGGGAGAGAACCCGGCACGGTGGCGCGGCCATCTCGAGAACCTGCTGGCGA
AGCGATCGCGCGCGCGATCGGTAAGGCACCATCCCGCGCTGCCGTACGAGGAAATTGGCGCGTTCGTTGCCGAACTGCGC
CAGCAAGAGGGCGTCGCGGCCCGGGCGCTCGAGTTCACGATCTTGACCGCGGCTCGGACAGGAGAAGTGATTGGCGCGAC
GCTCGACGAGTTCGACGACGAGCAGCGCGTCTGGACCGTTCCAGCGGGGAGGATGAAGGGCGAGCGCGCGCATCGTGTCC
CCTTGTCGCCGCAGGCGGTGCGCATCTTGAAGGAGATGCGATCGGTGACCGAAGGCCCATCTCTCTTCCCGGGACGCACG
CTCGACAAGCCTCTCTCGAACATGGCGATGCTGGTCCTGTTGAGGCGTATGGGGCGCGGCGATCTCACCGTCCACGGATT
TCGTTCCACCTTCCGGGACTGGTCGTCGGAGCTGACCGGCTATCCGCGGGAGGTCGCGGAGGCGGCGCTAGCGCATGCGG
TCGGGGACCAGGTGGAAGCAGCGTATCGCCGCGGGGATCTCTTCGCGAAGCGGCGCCAGATGATGGAGGCGTGGGCGAAG
TATTGCGACACGCCAAAGCGCGGCGGCGACGTGGTTCCGATGCGCCGCAAGGCAAGTTCACGGCAGTAA

Upstream 100 bases:

>100_bases
TCATCGCTTTATCCTTTTATTTTCAGTGGTTTGTCGCTCAATTAGTCTTGGTTTGTCTAGGATCGTTGCATATAATCAAG
TCAATTCGGTGTGGGTAGGG

Downstream 100 bases:

>100_bases
AACCGCGCCGGCGGCAACCCGGCAAGAGCGGCGGCCCGCGCGTTAGCGCGCGCGGGTCGCCTGACCAAAACGTGGCCTAT
ACGGAGGCTCACATCATGGC

Product: putative phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MGVEMITEAKRKIHRLSAIGVEKAKAPGYLGDGGGLYLQVSPSLTKSWIFRFKLHGRSREMGLGPYTALSLAEARKRAED
CRRLLLDGVDPIEARKGDRLQQKLQVARSMTFADCASTYIAAHRDAWKNAKHAQQWENTIETYANPVIGKLPIQDVDTNL
VVRILDPIWREKPETASRLRGRIEAILNWAKTRELRRGENPARWRGHLENLLAKRSRARSVRHHPALPYEEIGAFVAELR
QQEGVAARALEFTILTAARTGEVIGATLDEFDDEQRVWTVPAGRMKGERAHRVPLSPQAVRILKEMRSVTEGPSLFPGRT
LDKPLSNMAMLVLLRRMGRGDLTVHGFRSTFRDWSSELTGYPREVAEAALAHAVGDQVEAAYRRGDLFAKRRQMMEAWAK
YCDTPKRGGDVVPMRRKASSRQ

Sequences:

>Translated_422_residues
MGVEMITEAKRKIHRLSAIGVEKAKAPGYLGDGGGLYLQVSPSLTKSWIFRFKLHGRSREMGLGPYTALSLAEARKRAED
CRRLLLDGVDPIEARKGDRLQQKLQVARSMTFADCASTYIAAHRDAWKNAKHAQQWENTIETYANPVIGKLPIQDVDTNL
VVRILDPIWREKPETASRLRGRIEAILNWAKTRELRRGENPARWRGHLENLLAKRSRARSVRHHPALPYEEIGAFVAELR
QQEGVAARALEFTILTAARTGEVIGATLDEFDDEQRVWTVPAGRMKGERAHRVPLSPQAVRILKEMRSVTEGPSLFPGRT
LDKPLSNMAMLVLLRRMGRGDLTVHGFRSTFRDWSSELTGYPREVAEAALAHAVGDQVEAAYRRGDLFAKRRQMMEAWAK
YCDTPKRGGDVVPMRRKASSRQ
>Mature_421_residues
GVEMITEAKRKIHRLSAIGVEKAKAPGYLGDGGGLYLQVSPSLTKSWIFRFKLHGRSREMGLGPYTALSLAEARKRAEDC
RRLLLDGVDPIEARKGDRLQQKLQVARSMTFADCASTYIAAHRDAWKNAKHAQQWENTIETYANPVIGKLPIQDVDTNLV
VRILDPIWREKPETASRLRGRIEAILNWAKTRELRRGENPARWRGHLENLLAKRSRARSVRHHPALPYEEIGAFVAELRQ
QEGVAARALEFTILTAARTGEVIGATLDEFDDEQRVWTVPAGRMKGERAHRVPLSPQAVRILKEMRSVTEGPSLFPGRTL
DKPLSNMAMLVLLRRMGRGDLTVHGFRSTFRDWSSELTGYPREVAEAALAHAVGDQVEAAYRRGDLFAKRRQMMEAWAKY
CDTPKRGGDVVPMRRKASSRQ

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=373, Percent_Identity=33.5120643431635, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI1788690, Length=401, Percent_Identity=29.925187032419, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1788974, Length=420, Percent_Identity=29.7619047619048, Blast_Score=136, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47659; Mature: 47528

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVEMITEAKRKIHRLSAIGVEKAKAPGYLGDGGGLYLQVSPSLTKSWIFRFKLHGRSRE
CCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHEECCCCCC
MGLGPYTALSLAEARKRAEDCRRLLLDGVDPIEARKGDRLQQKLQVARSMTFADCASTYI
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AAHRDAWKNAKHAQQWENTIETYANPVIGKLPIQDVDTNLVVRILDPIWREKPETASRLR
HHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
GRIEAILNWAKTRELRRGENPARWRGHLENLLAKRSRARSVRHHPALPYEEIGAFVAELR
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
QQEGVAARALEFTILTAARTGEVIGATLDEFDDEQRVWTVPAGRMKGERAHRVPLSPQAV
HHCCHHHHHHHHHEEEHHHCCCHHHCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHH
RILKEMRSVTEGPSLFPGRTLDKPLSNMAMLVLLRRMGRGDLTVHGFRSTFRDWSSELTG
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCC
YPREVAEAALAHAVGDQVEAAYRRGDLFAKRRQMMEAWAKYCDTPKRGGDVVPMRRKASS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCC
RQ
CC
>Mature Secondary Structure 
GVEMITEAKRKIHRLSAIGVEKAKAPGYLGDGGGLYLQVSPSLTKSWIFRFKLHGRSRE
CHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHEECCCCCC
MGLGPYTALSLAEARKRAEDCRRLLLDGVDPIEARKGDRLQQKLQVARSMTFADCASTYI
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AAHRDAWKNAKHAQQWENTIETYANPVIGKLPIQDVDTNLVVRILDPIWREKPETASRLR
HHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
GRIEAILNWAKTRELRRGENPARWRGHLENLLAKRSRARSVRHHPALPYEEIGAFVAELR
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
QQEGVAARALEFTILTAARTGEVIGATLDEFDDEQRVWTVPAGRMKGERAHRVPLSPQAV
HHCCHHHHHHHHHEEEHHHCCCHHHCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHH
RILKEMRSVTEGPSLFPGRTLDKPLSNMAMLVLLRRMGRGDLTVHGFRSTFRDWSSELTG
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCC
YPREVAEAALAHAVGDQVEAAYRRGDLFAKRRQMMEAWAKYCDTPKRGGDVVPMRRKASS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCC
RQ
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]