| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
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The map label for this gene is 53720163
Identifier: 53720163
GI number: 53720163
Start: 3079284
End: 3080555
Strand: Reverse
Name: 53720163
Synonym: BPSL2552
Alternate gene names: NA
Gene position: 3080555-3079284 (Counterclockwise)
Preceding gene: 53720164
Following gene: 53720162
Centisome position: 75.6
GC content: 70.91
Gene sequence:
>1272_bases ATGGTCGCTGTGAGGCATCGATTGGCGGGCGTCGCGCTTGCCGCGTTCGCGTGCGGTGCGCTCGCGCACGACGCGCAGCC GGCCGCAGGCGCATCGTCCGCGCACGCGGCGCACATGGCGATGGACGCCGCGACGGCCGGCGCCGCGCAAAAGACGCCGC TCGCGACGGGGGCCGCGTTCGATGCGCGTCATCGGCTGTGGGTCGCGTGGGTCGAAGGGCAGCACGTCGTCGTCGCGCAC TCGGACGACGCCGGGCGCACATTGGCCCCGCCCGTGACGGTCAATGCGCTGCCCGAGCCGATCTACACGAGCGCGGAGAA CCGGCCGAAGCTCGCCGCGAGCCCGGACGGGCGCGCGATCTATGTGACGTGGTCGATGCCGCTCGATGCGCCCTACACCG GGATGGTGCGCTTCTCACGCTCGCTCGACGGCGGCGCGACGTGGTCGGTGCCCGTCACCGTGCATCGCGATCGGCAGGCG ATCACGCATCGTTTCGATATGCTGACGATCGATCCGCAAGGCCGCATCTTCGTCGCATGGATCGACAAGCGCGACCTCGT CGCCGCGCAGCGGGCAGGGCGTTCGTACGATGGCGCGGCGATCTATTACGCGGTGTCGACTGACGGCGGCGCGACGTTCG AGCCGGAACGCAAGGTGAGCGATCACACGTGCGAATGCTGCCGGATCGCGATGACGGTCGATTCCGACGGCCGCGTGCAA GCCGCGTGGCGCAATGTGTTTCCGGGCCAGATCCGCGATCATGCGGTGGCGGTGCTGCACGCGTCGGCGGATCGCGCGGT CGAGCCCGTGCGCGCGACGTTCTCGAACTGGCATGTCGAGGCTTGCCCGGATCACGGGCCCGCGCTCGCGATCACGGCCG ACGGCGTGCGGCATCTCGCGTGGTTCGGCGTCGTCGACGGCAAGGCCGACGTGTTCTATTCGCGGCTCGATGCGCGCGGC GCGCCGCTCGGCGCGCCATTTGCGTTCGGCGACGATCCGGCGGCGCCGGACGAACAGGCGTCGCATGCGGCGCTCGTCGC GCGGCGCGACACGCTGTGGCTCGCGTGGAAGGCGTTCGACGGCGATACGATGCGCATCAGGCTGCGCCGCTCCGACGACG GCGGCGCGCACTGGAGCGCGCCGCGCACGCTCGCGTGGACGTCCGGCGCGAGCGACAACCCGCAGTTGCTGGCCGACCGA GGGCGCGTCTATCTGTCGTGGCGCACGCGCAACGACGGCTATCGGTTGATCGACGTGGAGGGGCAGCGATGA
Upstream 100 bases:
>100_bases ATCGGCACTGGCTTGCGTCGTTCGGCATCGACAACGTGACCGATCGCCGCTACTACGTGTTCCATCCTTATCCGGGCCGC ACTTTTTATGGAGAGTTGAA
Downstream 100 bases:
>100_bases AGCGGGTGGCTTTCGCGCTCGCGGCACTCGCCGTACTGGCGAATGCCGCGCCGGGCGCGGCGCAAGAAGGGCGGTTGCCG CAGCCGCTGAGGGCGACGGA
Product: putative lipoprotein
Products: NA
Alternate protein names: BNR Repeat-Containing Protein; Signal Peptide Protein; BNR/Asp-Box Repeat-Containing Protein; Glycosyl Hydrolase BNR Repeat-Containing Protein; Cytochrome C Biogenesis Protein; BNR/Asp-Box Repeat Domain Protein
Number of amino acids: Translated: 423; Mature: 423
Protein sequence:
>423_residues MVAVRHRLAGVALAAFACGALAHDAQPAAGASSAHAAHMAMDAATAGAAQKTPLATGAAFDARHRLWVAWVEGQHVVVAH SDDAGRTLAPPVTVNALPEPIYTSAENRPKLAASPDGRAIYVTWSMPLDAPYTGMVRFSRSLDGGATWSVPVTVHRDRQA ITHRFDMLTIDPQGRIFVAWIDKRDLVAAQRAGRSYDGAAIYYAVSTDGGATFEPERKVSDHTCECCRIAMTVDSDGRVQ AAWRNVFPGQIRDHAVAVLHASADRAVEPVRATFSNWHVEACPDHGPALAITADGVRHLAWFGVVDGKADVFYSRLDARG APLGAPFAFGDDPAAPDEQASHAALVARRDTLWLAWKAFDGDTMRIRLRRSDDGGAHWSAPRTLAWTSGASDNPQLLADR GRVYLSWRTRNDGYRLIDVEGQR
Sequences:
>Translated_423_residues MVAVRHRLAGVALAAFACGALAHDAQPAAGASSAHAAHMAMDAATAGAAQKTPLATGAAFDARHRLWVAWVEGQHVVVAH SDDAGRTLAPPVTVNALPEPIYTSAENRPKLAASPDGRAIYVTWSMPLDAPYTGMVRFSRSLDGGATWSVPVTVHRDRQA ITHRFDMLTIDPQGRIFVAWIDKRDLVAAQRAGRSYDGAAIYYAVSTDGGATFEPERKVSDHTCECCRIAMTVDSDGRVQ AAWRNVFPGQIRDHAVAVLHASADRAVEPVRATFSNWHVEACPDHGPALAITADGVRHLAWFGVVDGKADVFYSRLDARG APLGAPFAFGDDPAAPDEQASHAALVARRDTLWLAWKAFDGDTMRIRLRRSDDGGAHWSAPRTLAWTSGASDNPQLLADR GRVYLSWRTRNDGYRLIDVEGQR >Mature_423_residues MVAVRHRLAGVALAAFACGALAHDAQPAAGASSAHAAHMAMDAATAGAAQKTPLATGAAFDARHRLWVAWVEGQHVVVAH SDDAGRTLAPPVTVNALPEPIYTSAENRPKLAASPDGRAIYVTWSMPLDAPYTGMVRFSRSLDGGATWSVPVTVHRDRQA ITHRFDMLTIDPQGRIFVAWIDKRDLVAAQRAGRSYDGAAIYYAVSTDGGATFEPERKVSDHTCECCRIAMTVDSDGRVQ AAWRNVFPGQIRDHAVAVLHASADRAVEPVRATFSNWHVEACPDHGPALAITADGVRHLAWFGVVDGKADVFYSRLDARG APLGAPFAFGDDPAAPDEQASHAALVARRDTLWLAWKAFDGDTMRIRLRRSDDGGAHWSAPRTLAWTSGASDNPQLLADR GRVYLSWRTRNDGYRLIDVEGQR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45665; Mature: 45665
Theoretical pI: Translated: 7.30; Mature: 7.30
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVAVRHRLAGVALAAFACGALAHDAQPAAGASSAHAAHMAMDAATAGAAQKTPLATGAAF CEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC DARHRLWVAWVEGQHVVVAHSDDAGRTLAPPVTVNALPEPIYTSAENRPKLAASPDGRAI CCCCEEEEEEECCCEEEEEECCCCCCEECCCEEECCCCCCCCCCCCCCCCEEECCCCCEE YVTWSMPLDAPYTGMVRFSRSLDGGATWSVPVTVHRDRQAITHRFDMLTIDPQGRIFVAW EEEEECCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCHHHHEEEEEEEECCCCCEEEEE IDKRDLVAAQRAGRSYDGAAIYYAVSTDGGATFEPERKVSDHTCECCRIAMTVDSDGRVQ ECCCHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEE AAWRNVFPGQIRDHAVAVLHASADRAVEPVRATFSNWHVEACPDHGPALAITADGVRHLA EHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCEEEECCCCCCEEEEECCCCEEEE WFGVVDGKADVFYSRLDARGAPLGAPFAFGDDPAAPDEQASHAALVARRDTLWLAWKAFD EEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEECC GDTMRIRLRRSDDGGAHWSAPRTLAWTSGASDNPQLLADRGRVYLSWRTRNDGYRLIDVE CCEEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCEEECCCEEEEEEEECCCCEEEEEEC GQR CCC >Mature Secondary Structure MVAVRHRLAGVALAAFACGALAHDAQPAAGASSAHAAHMAMDAATAGAAQKTPLATGAAF CEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC DARHRLWVAWVEGQHVVVAHSDDAGRTLAPPVTVNALPEPIYTSAENRPKLAASPDGRAI CCCCEEEEEEECCCEEEEEECCCCCCEECCCEEECCCCCCCCCCCCCCCCEEECCCCCEE YVTWSMPLDAPYTGMVRFSRSLDGGATWSVPVTVHRDRQAITHRFDMLTIDPQGRIFVAW EEEEECCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCHHHHEEEEEEEECCCCCEEEEE IDKRDLVAAQRAGRSYDGAAIYYAVSTDGGATFEPERKVSDHTCECCRIAMTVDSDGRVQ ECCCHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEE AAWRNVFPGQIRDHAVAVLHASADRAVEPVRATFSNWHVEACPDHGPALAITADGVRHLA EHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCEEEECCCCCCEEEEECCCCEEEE WFGVVDGKADVFYSRLDARGAPLGAPFAFGDDPAAPDEQASHAALVARRDTLWLAWKAFD EEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEECC GDTMRIRLRRSDDGGAHWSAPRTLAWTSGASDNPQLLADRGRVYLSWRTRNDGYRLIDVE CCEEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCEEECCCEEEEEEEECCCCEEEEEEC GQR CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA