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The map label for this gene is yciM [H]

Identifier: 53720122

GI number: 53720122

Start: 3026327

End: 3027496

Strand: Reverse

Name: yciM [H]

Synonym: BPSL2512

Alternate gene names: 53720122

Gene position: 3027496-3026327 (Counterclockwise)

Preceding gene: 53720123

Following gene: 53720121

Centisome position: 74.3

GC content: 65.56

Gene sequence:

>1170_bases
ATGGATCTTGATTTCTGGTGGCTGCTCGCCATTCCCGTCGCGTTCGCGCTCGGCTGGATGGCGTCGCGCTACGACCTCAA
CAAGCTGCTGTCCGAGAGCGCGAACCTGCCGCGCTCGTATTTTCGCGGCCTGAATTTCCTGCTGAACGAACAGCCGGACA
AAGCGATCGATGCGTTCATCGAAGTCGCGAAGCTCGATCCCGAAACGGTCGAGCTGCACTTCGCGCTCGGCAACCTGTTT
CGCCGCCGCGGCGAGACGGACCGGGCGATCCGCGTCCATCAGAATCTGCTGAGCCGCAACGATCTGCCCGTGAGCGAGCG
CGACCACGCGCTCTTCGAGCTTGGCCAGGACTTCCTGAAGGCGGGCCTGCTCGATCGTGCGGAGGAGACGTTCCACATGC
TGGCCGAGGGGGACTACGCGCTCGACGCGCAGCGCGCACTCCTCACGATCTACGAGATCGAGAAGGACTGGACCAAGTCG
ATCGACACCGCGGCGAGGATCGAAGCGATGGGCGCGCCGCGTCTCACGACGGAGATCTCGCAATTCCATTGCGAGCTTGC
TCAGGACGCGCTGCAGCGCAAGAGCGCCGAGCTCGCGGCCGAGCATCTGCGCGACGCGCTCGCGGTGAATCCGCAGAACG
CGCGCGCGGCGATCCTGTCGGGCGATACGGCCGCCGCGGCCGGCGACCATCGCGCGGCGATCGAGCACTGGCGCCGGATC
GAGACGCAGAATCCCGCTTATCTGCCGCTCGTCGCCGACAAGCTGATGAAATCGTACGCGGCGCTCGATCGGGCGGCCGA
GGGCGCCGAGCTGCTGACGGGCTATGCGCAGCGCTATCCGTCGAACGATCTGCTCGATGTCGTCTATCAGTATGTCGCGC
AACTGCGCGGCAACGACGTCGCGCATGCGCTCGCGCGCTCGCAGATGGAAAAGGCGCCGAACCTCTCCGGCATGCTGCAC
CTGCTCGACGCGCAGATCGCCGCGGCCGACGAACCGCGGCGATCCGAGCTCGAGATGATGCGCGCGCTCGTCAAGCAGCG
CACCAAGAATTTGCCGCGATATACATGCCAGAATTGCGGTTTCCGGGCGCGCCTGTTCTATTGGCAGTGCCCCGGATGCA
GCGGATGGGAAACCTATGCGCCGCGGCGCGTCGAGCCCGCCGTTGCGTAA

Upstream 100 bases:

>100_bases
GAGAACCCGGCCGTCGTCGACCAGCCGCCGATGCCGCCCGTCATTTAACGATGCCGACGCCGCGCACGCCGCGCGGCCCC
GGTTTTTTTCGACACGTCGC

Downstream 100 bases:

>100_bases
TGAATCGGTCATGGGGCGGCAATGAAGCGGTAATGAGGCAGGCCTCGCGGGCCGGCGCGACGCCGCCCGCGGCCTGAGCC
GGGCGGACGCCGTTCGCCCG

Product: tetratricopeptide repeat protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MDLDFWWLLAIPVAFALGWMASRYDLNKLLSESANLPRSYFRGLNFLLNEQPDKAIDAFIEVAKLDPETVELHFALGNLF
RRRGETDRAIRVHQNLLSRNDLPVSERDHALFELGQDFLKAGLLDRAEETFHMLAEGDYALDAQRALLTIYEIEKDWTKS
IDTAARIEAMGAPRLTTEISQFHCELAQDALQRKSAELAAEHLRDALAVNPQNARAAILSGDTAAAAGDHRAAIEHWRRI
ETQNPAYLPLVADKLMKSYAALDRAAEGAELLTGYAQRYPSNDLLDVVYQYVAQLRGNDVAHALARSQMEKAPNLSGMLH
LLDAQIAAADEPRRSELEMMRALVKQRTKNLPRYTCQNCGFRARLFYWQCPGCSGWETYAPRRVEPAVA

Sequences:

>Translated_389_residues
MDLDFWWLLAIPVAFALGWMASRYDLNKLLSESANLPRSYFRGLNFLLNEQPDKAIDAFIEVAKLDPETVELHFALGNLF
RRRGETDRAIRVHQNLLSRNDLPVSERDHALFELGQDFLKAGLLDRAEETFHMLAEGDYALDAQRALLTIYEIEKDWTKS
IDTAARIEAMGAPRLTTEISQFHCELAQDALQRKSAELAAEHLRDALAVNPQNARAAILSGDTAAAAGDHRAAIEHWRRI
ETQNPAYLPLVADKLMKSYAALDRAAEGAELLTGYAQRYPSNDLLDVVYQYVAQLRGNDVAHALARSQMEKAPNLSGMLH
LLDAQIAAADEPRRSELEMMRALVKQRTKNLPRYTCQNCGFRARLFYWQCPGCSGWETYAPRRVEPAVA
>Mature_389_residues
MDLDFWWLLAIPVAFALGWMASRYDLNKLLSESANLPRSYFRGLNFLLNEQPDKAIDAFIEVAKLDPETVELHFALGNLF
RRRGETDRAIRVHQNLLSRNDLPVSERDHALFELGQDFLKAGLLDRAEETFHMLAEGDYALDAQRALLTIYEIEKDWTKS
IDTAARIEAMGAPRLTTEISQFHCELAQDALQRKSAELAAEHLRDALAVNPQNARAAILSGDTAAAAGDHRAAIEHWRRI
ETQNPAYLPLVADKLMKSYAALDRAAEGAELLTGYAQRYPSNDLLDVVYQYVAQLRGNDVAHALARSQMEKAPNLSGMLH
LLDAQIAAADEPRRSELEMMRALVKQRTKNLPRYTCQNCGFRARLFYWQCPGCSGWETYAPRRVEPAVA

Specific function: Unknown

COG id: COG2956

COG function: function code G; Predicted N-acetylglucosaminyl transferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI2367116, Length=375, Percent_Identity=36, Blast_Score=246, Evalue=1e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43883; Mature: 43883

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLDFWWLLAIPVAFALGWMASRYDLNKLLSESANLPRSYFRGLNFLLNEQPDKAIDAFI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHH
EVAKLDPETVELHFALGNLFRRRGETDRAIRVHQNLLSRNDLPVSERDHALFELGQDFLK
HHHHCCCCCEEHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
AGLLDRAEETFHMLAEGDYALDAQRALLTIYEIEKDWTKSIDTAARIEAMGAPRLTTEIS
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
QFHCELAQDALQRKSAELAAEHLRDALAVNPQNARAAILSGDTAAAAGDHRAAIEHWRRI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHCCCCHHHHHHHHHHH
ETQNPAYLPLVADKLMKSYAALDRAAEGAELLTGYAQRYPSNDLLDVVYQYVAQLRGNDV
CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
AHALARSQMEKAPNLSGMLHLLDAQIAAADEPRRSELEMMRALVKQRTKNLPRYTCQNCG
HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCC
FRARLFYWQCPGCSGWETYAPRRVEPAVA
CEEEEEEEECCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDLDFWWLLAIPVAFALGWMASRYDLNKLLSESANLPRSYFRGLNFLLNEQPDKAIDAFI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHH
EVAKLDPETVELHFALGNLFRRRGETDRAIRVHQNLLSRNDLPVSERDHALFELGQDFLK
HHHHCCCCCEEHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
AGLLDRAEETFHMLAEGDYALDAQRALLTIYEIEKDWTKSIDTAARIEAMGAPRLTTEIS
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
QFHCELAQDALQRKSAELAAEHLRDALAVNPQNARAAILSGDTAAAAGDHRAAIEHWRRI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHCCCCHHHHHHHHHHH
ETQNPAYLPLVADKLMKSYAALDRAAEGAELLTGYAQRYPSNDLLDVVYQYVAQLRGNDV
CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
AHALARSQMEKAPNLSGMLHLLDAQIAAADEPRRSELEMMRALVKQRTKNLPRYTCQNCG
HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCC
FRARLFYWQCPGCSGWETYAPRRVEPAVA
CEEEEEEEECCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]