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The map label for this gene is ydhO [H]

Identifier: 53719808

GI number: 53719808

Start: 2640218

End: 2640919

Strand: Reverse

Name: ydhO [H]

Synonym: BPSL2199

Alternate gene names: 53719808

Gene position: 2640919-2640218 (Counterclockwise)

Preceding gene: 53719809

Following gene: 53719806

Centisome position: 64.82

GC content: 65.24

Gene sequence:

>702_bases
ATGCAGCACCGATATCTGACCCAGGCTTGTACGCGCGTCGTCGCCGGGATGTTCGTCGGCATCCTGATCGCTGCAGCTCC
CGGCGCGTTCGCCGACGAAGTCAGCAGTTCCAGTCAGAATGCGATCAATTCGGCTCAATCCGAGCCGGCTTCCTCCTCGA
ATCTCCAACAGGTCAACGTGCCCGCACCCGCGAAGAGCCAGGGCGGCGCCAAGGCGTTCCTGTCGGGCATGGCCGGCAAA
GCGGGCGACGTCGTCGTCGGCGCGCTGAACATGATCGGCGTGCGCTACCGCTGGGGCGGCAACACGCCGGATTCGGGCCT
CGATTGCAGCGGTTTCGTCCGCTACGTGTTCCAGGACACGCTCGGCATGTCGCTGCCGCGTCGCGCGGAGGAGATGAGCC
GTGTCGGCGAGAAGGTGCGCATGAGCGAGCTGAAGCCGGGCGACCTCGTATTCTTCAACACGATGCGCCGGACGTTCTCG
CACGTCGGCATCTACATCGGCGACAACAAGTTCGTGCACTCGCCGTCGACGGGCAGCACGATTCGCGTCGACGATCTCGA
TAGCGGCTACTGGGAAAAGCGTTTCACCGGCGCGCGCCGGATCGAGACGCAGTTCTCGACGAAGCCCGACGATCTGCGCC
AGCGCGTGAAGGCGACGATCGGCGACGGCGGCGTCAACGCGAGCGCGAGCGGCAGCAACTAG

Upstream 100 bases:

>100_bases
GAAAATATCAATTCCTTTTGACAAACAAATACTTCGTGGCTAGTATCGACCGGAATTTTTCCGCCAATCAGCTGATTTTC
CAGCACAAGTTCATCGACCA

Downstream 100 bases:

>100_bases
CCGGTCACGCCGCATCGCGCCGGCCGATGCCGGTGTCGAAGCCCCGCGCTCCCATGGAGGCGGGGCTTTTGCTTTGGGGC
GGCGTTTTCGGCGCGGCGCG

Product: peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MQHRYLTQACTRVVAGMFVGILIAAAPGAFADEVSSSSQNAINSAQSEPASSSNLQQVNVPAPAKSQGGAKAFLSGMAGK
AGDVVVGALNMIGVRYRWGGNTPDSGLDCSGFVRYVFQDTLGMSLPRRAEEMSRVGEKVRMSELKPGDLVFFNTMRRTFS
HVGIYIGDNKFVHSPSTGSTIRVDDLDSGYWEKRFTGARRIETQFSTKPDDLRQRVKATIGDGGVNASASGSN

Sequences:

>Translated_233_residues
MQHRYLTQACTRVVAGMFVGILIAAAPGAFADEVSSSSQNAINSAQSEPASSSNLQQVNVPAPAKSQGGAKAFLSGMAGK
AGDVVVGALNMIGVRYRWGGNTPDSGLDCSGFVRYVFQDTLGMSLPRRAEEMSRVGEKVRMSELKPGDLVFFNTMRRTFS
HVGIYIGDNKFVHSPSTGSTIRVDDLDSGYWEKRFTGARRIETQFSTKPDDLRQRVKATIGDGGVNASASGSN
>Mature_233_residues
MQHRYLTQACTRVVAGMFVGILIAAAPGAFADEVSSSSQNAINSAQSEPASSSNLQQVNVPAPAKSQGGAKAFLSGMAGK
AGDVVVGALNMIGVRYRWGGNTPDSGLDCSGFVRYVFQDTLGMSLPRRAEEMSRVGEKVRMSELKPGDLVFFNTMRRTFS
HVGIYIGDNKFVHSPSTGSTIRVDDLDSGYWEKRFTGARRIETQFSTKPDDLRQRVKATIGDGGVNASASGSN

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=138, Percent_Identity=44.9275362318841, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI1786421, Length=156, Percent_Identity=40.3846153846154, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1788501, Length=109, Percent_Identity=47.7064220183486, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1788001, Length=110, Percent_Identity=42.7272727272727, Blast_Score=89, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 24923; Mature: 24923

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHRYLTQACTRVVAGMFVGILIAAAPGAFADEVSSSSQNAINSAQSEPASSSNLQQVNV
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEC
PAPAKSQGGAKAFLSGMAGKAGDVVVGALNMIGVRYRWGGNTPDSGLDCSGFVRYVFQDT
CCCCCCCCCHHHHHHHCCCCCCCHHEEHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHH
LGMSLPRRAEEMSRVGEKVRMSELKPGDLVFFNTMRRTFSHVGIYIGDNKFVHSPSTGST
HCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHCCEEECCCEEEECCCCCCE
IRVDDLDSGYWEKRFTGARRIETQFSTKPDDLRQRVKATIGDGGVNASASGSN
EEEECCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MQHRYLTQACTRVVAGMFVGILIAAAPGAFADEVSSSSQNAINSAQSEPASSSNLQQVNV
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEC
PAPAKSQGGAKAFLSGMAGKAGDVVVGALNMIGVRYRWGGNTPDSGLDCSGFVRYVFQDT
CCCCCCCCCHHHHHHHCCCCCCCHHEEHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHH
LGMSLPRRAEEMSRVGEKVRMSELKPGDLVFFNTMRRTFSHVGIYIGDNKFVHSPSTGST
HCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHCCEEECCCEEEECCCCCCE
IRVDDLDSGYWEKRFTGARRIETQFSTKPDDLRQRVKATIGDGGVNASASGSN
EEEECCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]