Click here to switch to the map view.

The map label for this gene is omp85 [H]

Identifier: 53719760

GI number: 53719760

Start: 2580221

End: 2582530

Strand: Reverse

Name: omp85 [H]

Synonym: BPSL2151

Alternate gene names: 53719760

Gene position: 2582530-2580221 (Counterclockwise)

Preceding gene: 53719761

Following gene: 53719759

Centisome position: 63.38

GC content: 63.85

Gene sequence:

>2310_bases
ATGTTGTTCAAACCTCATCGCTTCGTACCTAAGACGGTTGCTGCCGCGGCGCTCGCCGCGCATGGTCTCGCGGCACACGC
AACGGCGCCCTTCGTGGTGCAGGACATCAAGATCGAAGGCTTGCAGCGCGTCGAAGCGGGTTCCGTGTTCGCCTACCTGC
CGATCAAGCAGGGCGATACGTTCACCGACGACAAGGCATCCGAGGCGATTCGCGCGCTGTACGCGACGGGCTTCTTCAAC
GACGTGCGGATCGCGACGCAGGGCGGCGTCGTGATCGTCCAGGTGCAGGAGCGTCCGGCGATCGCGTCGATCGACTTCAC
CGGCATCAAGGAATTCGACAAGGACAACCTGAACAAGGCGCTGAAGGCCGTGGGCCTGTCGCAGGGGCGTTACTACGACA
AGGCGCTCGTCGACAAGGCGGAGCAGGAGCTCAAGCGCCAGTACCTGACGCGCGGCTTCTACGCGGCGGAAGTGTCGACG
ACGGTCACGCCGGTCGACGCGAACCGCGTGTCGATCCTGTTCGCGGTCGCCGAAGGCCCGAGCGCGAAGATTCGCCAGAT
CAACTTCATCGGCAACAAGGCGTTCAAGACGAGCACGCTGCGCGACGAGATGCAGCTGTCCACGCCGAACTGGTTCTCGT
GGTACACGAAGAACGACCTGTACTCGAAGGAAAAGCTGACGGGCGACCTCGAGAACGTGCGCTCGTACTACCTGAACCGC
GGGTACCTGGAGTTCAACATCGAGTCGACGCAGGTGTCGATCTCGCCGGACAAGAAGGACATGTACCTGACGGTGGCGCT
GCACGAAGGCGAGCCGTACACGGTATCGAGCGTGAAGCTCGCCGGCAATCTGCTGGATCGCCAGGCCGAGCTCGAGAAGC
TCGTCAAGATCAAGCCGGGCGACCGCTTCTCGGCCGAGAAGCTGCAGCAGACGACGAAGGCGATCGTCGACAAGCTCGGC
CAGTACGGCTACGCGTTCGCGACGGTGAACGCGCAGCCGGAAATCGATCAGGCGACGCACAAGGTGGGCCTCACGCTCGT
CGTCGATCCGAGCCGGCGCGTGTACGTGCGGCGGATCAACATCGTCGGCAACACGCGCACGCGTGACGAGGTGGTGCGTC
GCGAGATGCGCCAGCTCGAGAGCTCGTGGTTCGATTCGAGCCGTCTCGCGCTGTCGAAGGACCGCGTGAACCGTCTCGGC
TACTTCACCGACGTCGACGTGACGACGGTGCCCGTCGAGGGCACGAACGACCAGGTCGACGTGAACGTGAAGGTCGCCGA
AAAGCCGACGGGCGCGATCACGCTCGGCGCGGGCTTCTCGTCGACGGATAAGGTCGTGCTGTCGGCCGGCATCTCGCAGG
ACAACGTGTTCGGCTCCGGCACGAGCCTCGCGGTGAACGTGAACACCGCGAAGAGCTACCGCACGCTGACCGTCACGCAG
GTCGACCCGTACTTCACCGTCGACGGCATCAAGCGGATCACCGACGTGTTCTACCGCACGTATCAGCCGCTCTATTACTC
GACGAACTCGAGCTTCCGGATCATCACGGCGGGCGGCAACCTGAAGTTCGGCATTCCGTTCTCGGAAACCGACACGGTCT
ATTTCGGCGCGGGCTTCGAGCAGAACCGCCTCGACGTCGATTCGAACACGCCGCAGTCGTATCAGGATTACGTGAACGAG
TTCGGCCGCGTGTCGAACACGGTGCCGCTCACGATCGGCTGGTCGCGCGACGCGCGCGACAGCGCGCTGATCCCGAGCCG
CGGCTACTTCACGCAGGCGAACGCCGAATACGGCGTGCCGGTGGGCAAGATCCAGTACTACAAGATGGACGTGCAGGGCC
AGTACTACTACTCGTTCGCGCGCGGCTTCATCCTCGGCCTGAACTTCCAGGCGGGCTACGGCAACGGCATCGGCAATCCG
TACCCGATCTTCAAGAATTACTACGCGGGCGGTATCGGCTCCGTGCGCGGCTACGAGCCGAGCTCGCTCGGCCCGCGCGA
CACGAAGACGAACGATCCGATCGGCGGCTCGAAGATGGTCGTCGGCAACATCGAGCTGACGTTCCCGCTGCCGGGCACGG
GCTACGACCGCACGCTGCGCGTGTTCACGTTCCTCGACGGCGGCAACGTGTGGGGCAATGCGCCGGGCGGCACGAGCACG
GGCGCGAACGGTCTGCGCTACGGCTACGGTATCGGCCTCGCGTGGATCTCGCCGATCGGGCCGCTCAAGCTGAGCTTGGG
CTTCCCGCTGCAGAAGCACGAAGGCGATCAGTATCAGAAATTCCAGTTCCAGATCGGGACGGCGTTCTGA

Upstream 100 bases:

>100_bases
CTGTTCAACGATCTGGCTCGGTTAATCCATTTTTGACGCGTCGGGCGGCAGCCGTAACGGTGGCCGCCTGATCTGATGCA
AGCTTAAACACTGGGGATGC

Downstream 100 bases:

>100_bases
TCGATCAGGCACTGACTACAGCATCGAGAGGATAATCTTGCTAACCGGTAAGTTTTCGAAACGAGTGATGTGCGCGCTGG
CGCTCGCGGCCGCGCTCGGC

Product: putative outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 769; Mature: 769

Protein sequence:

>769_residues
MLFKPHRFVPKTVAAAALAAHGLAAHATAPFVVQDIKIEGLQRVEAGSVFAYLPIKQGDTFTDDKASEAIRALYATGFFN
DVRIATQGGVVIVQVQERPAIASIDFTGIKEFDKDNLNKALKAVGLSQGRYYDKALVDKAEQELKRQYLTRGFYAAEVST
TVTPVDANRVSILFAVAEGPSAKIRQINFIGNKAFKTSTLRDEMQLSTPNWFSWYTKNDLYSKEKLTGDLENVRSYYLNR
GYLEFNIESTQVSISPDKKDMYLTVALHEGEPYTVSSVKLAGNLLDRQAELEKLVKIKPGDRFSAEKLQQTTKAIVDKLG
QYGYAFATVNAQPEIDQATHKVGLTLVVDPSRRVYVRRINIVGNTRTRDEVVRREMRQLESSWFDSSRLALSKDRVNRLG
YFTDVDVTTVPVEGTNDQVDVNVKVAEKPTGAITLGAGFSSTDKVVLSAGISQDNVFGSGTSLAVNVNTAKSYRTLTVTQ
VDPYFTVDGIKRITDVFYRTYQPLYYSTNSSFRIITAGGNLKFGIPFSETDTVYFGAGFEQNRLDVDSNTPQSYQDYVNE
FGRVSNTVPLTIGWSRDARDSALIPSRGYFTQANAEYGVPVGKIQYYKMDVQGQYYYSFARGFILGLNFQAGYGNGIGNP
YPIFKNYYAGGIGSVRGYEPSSLGPRDTKTNDPIGGSKMVVGNIELTFPLPGTGYDRTLRVFTFLDGGNVWGNAPGGTST
GANGLRYGYGIGLAWISPIGPLKLSLGFPLQKHEGDQYQKFQFQIGTAF

Sequences:

>Translated_769_residues
MLFKPHRFVPKTVAAAALAAHGLAAHATAPFVVQDIKIEGLQRVEAGSVFAYLPIKQGDTFTDDKASEAIRALYATGFFN
DVRIATQGGVVIVQVQERPAIASIDFTGIKEFDKDNLNKALKAVGLSQGRYYDKALVDKAEQELKRQYLTRGFYAAEVST
TVTPVDANRVSILFAVAEGPSAKIRQINFIGNKAFKTSTLRDEMQLSTPNWFSWYTKNDLYSKEKLTGDLENVRSYYLNR
GYLEFNIESTQVSISPDKKDMYLTVALHEGEPYTVSSVKLAGNLLDRQAELEKLVKIKPGDRFSAEKLQQTTKAIVDKLG
QYGYAFATVNAQPEIDQATHKVGLTLVVDPSRRVYVRRINIVGNTRTRDEVVRREMRQLESSWFDSSRLALSKDRVNRLG
YFTDVDVTTVPVEGTNDQVDVNVKVAEKPTGAITLGAGFSSTDKVVLSAGISQDNVFGSGTSLAVNVNTAKSYRTLTVTQ
VDPYFTVDGIKRITDVFYRTYQPLYYSTNSSFRIITAGGNLKFGIPFSETDTVYFGAGFEQNRLDVDSNTPQSYQDYVNE
FGRVSNTVPLTIGWSRDARDSALIPSRGYFTQANAEYGVPVGKIQYYKMDVQGQYYYSFARGFILGLNFQAGYGNGIGNP
YPIFKNYYAGGIGSVRGYEPSSLGPRDTKTNDPIGGSKMVVGNIELTFPLPGTGYDRTLRVFTFLDGGNVWGNAPGGTST
GANGLRYGYGIGLAWISPIGPLKLSLGFPLQKHEGDQYQKFQFQIGTAF
>Mature_769_residues
MLFKPHRFVPKTVAAAALAAHGLAAHATAPFVVQDIKIEGLQRVEAGSVFAYLPIKQGDTFTDDKASEAIRALYATGFFN
DVRIATQGGVVIVQVQERPAIASIDFTGIKEFDKDNLNKALKAVGLSQGRYYDKALVDKAEQELKRQYLTRGFYAAEVST
TVTPVDANRVSILFAVAEGPSAKIRQINFIGNKAFKTSTLRDEMQLSTPNWFSWYTKNDLYSKEKLTGDLENVRSYYLNR
GYLEFNIESTQVSISPDKKDMYLTVALHEGEPYTVSSVKLAGNLLDRQAELEKLVKIKPGDRFSAEKLQQTTKAIVDKLG
QYGYAFATVNAQPEIDQATHKVGLTLVVDPSRRVYVRRINIVGNTRTRDEVVRREMRQLESSWFDSSRLALSKDRVNRLG
YFTDVDVTTVPVEGTNDQVDVNVKVAEKPTGAITLGAGFSSTDKVVLSAGISQDNVFGSGTSLAVNVNTAKSYRTLTVTQ
VDPYFTVDGIKRITDVFYRTYQPLYYSTNSSFRIITAGGNLKFGIPFSETDTVYFGAGFEQNRLDVDSNTPQSYQDYVNE
FGRVSNTVPLTIGWSRDARDSALIPSRGYFTQANAEYGVPVGKIQYYKMDVQGQYYYSFARGFILGLNFQAGYGNGIGNP
YPIFKNYYAGGIGSVRGYEPSSLGPRDTKTNDPIGGSKMVVGNIELTFPLPGTGYDRTLRVFTFLDGGNVWGNAPGGTST
GANGLRYGYGIGLAWISPIGPLKLSLGFPLQKHEGDQYQKFQFQIGTAF

Specific function: Unknown

COG id: COG4775

COG function: function code M; Outer membrane protein/protective antigen OMA87

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen D15 family [H]

Homologues:

Organism=Homo sapiens, GI225543166, Length=481, Percent_Identity=23.2848232848233, Blast_Score=71, Evalue=5e-12,
Organism=Escherichia coli, GI1786374, Length=821, Percent_Identity=36.2971985383678, Blast_Score=488, Evalue=1e-139,

Paralogues:

None

Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR016474
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 84908; Mature: 84908

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFKPHRFVPKTVAAAALAAHGLAAHATAPFVVQDIKIEGLQRVEAGSVFAYLPIKQGDT
CCCCCCCCCCHHHHHHHHHHCCCHHCCCCCEEEEEEEECCCEEECCCCEEEEEEECCCCC
FTDDKASEAIRALYATGFFNDVRIATQGGVVIVQVQERPAIASIDFTGIKEFDKDNLNKA
CCCCHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHH
LKAVGLSQGRYYDKALVDKAEQELKRQYLTRGFYAAEVSTTVTPVDANRVSILFAVAEGP
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCC
SAKIRQINFIGNKAFKTSTLRDEMQLSTPNWFSWYTKNDLYSKEKLTGDLENVRSYYLNR
CCEEEEEEEECCCCEECHHHHHHHCCCCCCCEEEEECCCCCCHHHHCCCHHHHHHHHHCC
GYLEFNIESTQVSISPDKKDMYLTVALHEGEPYTVSSVKLAGNLLDRQAELEKLVKIKPG
CEEEEEEECEEEEECCCCCCEEEEEEEECCCCEEEEEEEHHHHHHHHHHHHHHHEEECCC
DRFSAEKLQQTTKAIVDKLGQYGYAFATVNAQPEIDQATHKVGLTLVVDPSRRVYVRRIN
CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCEEEEECCCCEEEEEEEE
IVGNTRTRDEVVRREMRQLESSWFDSSRLALSKDRVNRLGYFTDVDVTTVPVEGTNDQVD
EECCCCCHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHCCCEEECCEEEEEECCCCCEEE
VNVKVAEKPTGAITLGAGFSSTDKVVLSAGISQDNVFGSGTSLAVNVNTAKSYRTLTVTQ
EEEEEECCCCCEEEECCCCCCCCCEEEEECCCCCCEECCCCEEEEEEECCCCEEEEEEEE
VDPYFTVDGIKRITDVFYRTYQPLYYSTNSSFRIITAGGNLKFGIPFSETDTVYFGAGFE
ECCEEEHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCEEECCCCCCCCEEEEECCCC
QNRLDVDSNTPQSYQDYVNEFGRVSNTVPLTIGWSRDARDSALIPSRGYFTQANAEYGVP
CCCEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCC
VGKIQYYKMDVQGQYYYSFARGFILGLNFQAGYGNGIGNPYPIFKNYYAGGIGSVRGYEP
CCEEEEEEEECCCEEEEEEECEEEEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
SSLGPRDTKTNDPIGGSKMVVGNIELTFPLPGTGYDRTLRVFTFLDGGNVWGNAPGGTST
CCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEEEEECCCEECCCCCCCCC
GANGLRYGYGIGLAWISPIGPLKLSLGFPLQKHEGDQYQKFQFQIGTAF
CCCCCEEEEEECCCEECCCCCEEEEECCCHHCCCCCCEEEEEEEEECCC
>Mature Secondary Structure
MLFKPHRFVPKTVAAAALAAHGLAAHATAPFVVQDIKIEGLQRVEAGSVFAYLPIKQGDT
CCCCCCCCCCHHHHHHHHHHCCCHHCCCCCEEEEEEEECCCEEECCCCEEEEEEECCCCC
FTDDKASEAIRALYATGFFNDVRIATQGGVVIVQVQERPAIASIDFTGIKEFDKDNLNKA
CCCCHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHH
LKAVGLSQGRYYDKALVDKAEQELKRQYLTRGFYAAEVSTTVTPVDANRVSILFAVAEGP
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCC
SAKIRQINFIGNKAFKTSTLRDEMQLSTPNWFSWYTKNDLYSKEKLTGDLENVRSYYLNR
CCEEEEEEEECCCCEECHHHHHHHCCCCCCCEEEEECCCCCCHHHHCCCHHHHHHHHHCC
GYLEFNIESTQVSISPDKKDMYLTVALHEGEPYTVSSVKLAGNLLDRQAELEKLVKIKPG
CEEEEEEECEEEEECCCCCCEEEEEEEECCCCEEEEEEEHHHHHHHHHHHHHHHEEECCC
DRFSAEKLQQTTKAIVDKLGQYGYAFATVNAQPEIDQATHKVGLTLVVDPSRRVYVRRIN
CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCEEEEECCCCEEEEEEEE
IVGNTRTRDEVVRREMRQLESSWFDSSRLALSKDRVNRLGYFTDVDVTTVPVEGTNDQVD
EECCCCCHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHCCCEEECCEEEEEECCCCCEEE
VNVKVAEKPTGAITLGAGFSSTDKVVLSAGISQDNVFGSGTSLAVNVNTAKSYRTLTVTQ
EEEEEECCCCCEEEECCCCCCCCCEEEEECCCCCCEECCCCEEEEEEECCCCEEEEEEEE
VDPYFTVDGIKRITDVFYRTYQPLYYSTNSSFRIITAGGNLKFGIPFSETDTVYFGAGFE
ECCEEEHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCEEECCCCCCCCEEEEECCCC
QNRLDVDSNTPQSYQDYVNEFGRVSNTVPLTIGWSRDARDSALIPSRGYFTQANAEYGVP
CCCEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCC
VGKIQYYKMDVQGQYYYSFARGFILGLNFQAGYGNGIGNPYPIFKNYYAGGIGSVRGYEP
CCEEEEEEEECCCEEEEEEECEEEEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
SSLGPRDTKTNDPIGGSKMVVGNIELTFPLPGTGYDRTLRVFTFLDGGNVWGNAPGGTST
CCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEEEEECCCEECCCCCCCCC
GANGLRYGYGIGLAWISPIGPLKLSLGFPLQKHEGDQYQKFQFQIGTAF
CCCCCEEEEEECCCEECCCCCEEEEECCCHHCCCCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]