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The map label for this gene is yfeR [H]

Identifier: 53719537

GI number: 53719537

Start: 2294125

End: 2295027

Strand: Reverse

Name: yfeR [H]

Synonym: BPSL1923

Alternate gene names: 53719537

Gene position: 2295027-2294125 (Counterclockwise)

Preceding gene: 53719540

Following gene: 53719536

Centisome position: 56.33

GC content: 70.43

Gene sequence:

>903_bases
ATGAATATCACGCTCAGACAGTTACGCGTGTTCATCGAGGTCGCGCGGCTCAAGAGCTTCAGCCGGGCGGGCGACGAGAT
CGGTCTCACGCAGTCGGCCGTGAGCCGCTCGGTGCGCGAGCTGGAAGGCGAGATCGGTCTCAAGCTGATCGACCGAACCA
CGCGCGACGTGCAACTGACCGACGTCGGCACCAATCTGATCGCGAGCGTGTCGCGCCTGCTCGGTGACCTCGACGATGCG
CTGCGCGAGATTCGCGAGATCGGCGAGCAGCGCCGCGGGCGCGTGATCGTCGCGGCGAGCCCGACGATTGCGTGCCGGCT
GATGCCGCGCGTCGTCGCCGCATGCGAGCGGCGCTTTCCGTTCGTCACGCTCGGCCTGCGCGACGATGTGCAGAGCGATG
TACTGCGCAAGGTGAAGTCGGGCGAGGTCGACTTCGGCGTCGTGATCGGGCCGCTCGCGACGAGCGAGCTGATCAGCGAG
CCGTTGATGACCGATTCGTTCTGCCTCGTCGCGCGCGCCGATCATCCGCTTGCCGCCCGCGATCGCGTGCCGTGGACGGC
GCTCGCGGGCGAGCGGCTCGTGCTGCTCGACTACGCGTCGGGCAGCCGGCCGCTGATCGACGCGGCGCTTGCGGCGCATC
GGGTCGCGGCGGGGGTCGTGCAGGAGCTCGGCCATTCGGCGACGGTGTTCGGCCTCGTCGAGGCGGGCGTCGGGGTGAGC
GTGTTGCCGTGGCTGTCGCTGCCGCTTCCGGCCGGCTCGTCGCTCGTCGCGCGGCCGCTCGCGCCGCGCGCGGAGCGTAC
CGTGGAGCTCGTGCGGCGGCGCGATCGCTCGCTGTCGCCGGCGGCGGACGCGGTCTGGGGGCTCGTGAAGGAAATGCCGG
CGCGTGTCGAGGATCTGAACTGA

Upstream 100 bases:

>100_bases
TGCGTTTCAGCCGAGTGCTGCACCGCACCGACACACGGCACGGGATCGTGAGGACGCAATACAATCGCGCATCGATGCGT
CCGATTGATGAGGCAATCCC

Downstream 100 bases:

>100_bases
GCGGCGAACGACCGGGCCGCGTCGAGGCTTTCCCGCCTGATGCCCGCGGCGTTCGCGCGGCGGCCGGGAGCGGCGGGGAG
AGCGTGGTTCGTCGGCGCGG

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MNITLRQLRVFIEVARLKSFSRAGDEIGLTQSAVSRSVRELEGEIGLKLIDRTTRDVQLTDVGTNLIASVSRLLGDLDDA
LREIREIGEQRRGRVIVAASPTIACRLMPRVVAACERRFPFVTLGLRDDVQSDVLRKVKSGEVDFGVVIGPLATSELISE
PLMTDSFCLVARADHPLAARDRVPWTALAGERLVLLDYASGSRPLIDAALAAHRVAAGVVQELGHSATVFGLVEAGVGVS
VLPWLSLPLPAGSSLVARPLAPRAERTVELVRRRDRSLSPAADAVWGLVKEMPARVEDLN

Sequences:

>Translated_300_residues
MNITLRQLRVFIEVARLKSFSRAGDEIGLTQSAVSRSVRELEGEIGLKLIDRTTRDVQLTDVGTNLIASVSRLLGDLDDA
LREIREIGEQRRGRVIVAASPTIACRLMPRVVAACERRFPFVTLGLRDDVQSDVLRKVKSGEVDFGVVIGPLATSELISE
PLMTDSFCLVARADHPLAARDRVPWTALAGERLVLLDYASGSRPLIDAALAAHRVAAGVVQELGHSATVFGLVEAGVGVS
VLPWLSLPLPAGSSLVARPLAPRAERTVELVRRRDRSLSPAADAVWGLVKEMPARVEDLN
>Mature_300_residues
MNITLRQLRVFIEVARLKSFSRAGDEIGLTQSAVSRSVRELEGEIGLKLIDRTTRDVQLTDVGTNLIASVSRLLGDLDDA
LREIREIGEQRRGRVIVAASPTIACRLMPRVVAACERRFPFVTLGLRDDVQSDVLRKVKSGEVDFGVVIGPLATSELISE
PLMTDSFCLVARADHPLAARDRVPWTALAGERLVLLDYASGSRPLIDAALAAHRVAAGVVQELGHSATVFGLVEAGVGVS
VLPWLSLPLPAGSSLVARPLAPRAERTVELVRRRDRSLSPAADAVWGLVKEMPARVEDLN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788748, Length=291, Percent_Identity=51.2027491408935, Blast_Score=286, Evalue=1e-78,
Organism=Escherichia coli, GI145693105, Length=290, Percent_Identity=32.0689655172414, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI1788481, Length=284, Percent_Identity=34.5070422535211, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI157672245, Length=284, Percent_Identity=31.3380281690141, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI1790399, Length=281, Percent_Identity=30.2491103202847, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787879, Length=256, Percent_Identity=32.03125, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1788887, Length=296, Percent_Identity=26.0135135135135, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1786401, Length=176, Percent_Identity=34.6590909090909, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788297, Length=242, Percent_Identity=26.4462809917355, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789204, Length=303, Percent_Identity=27.7227722772277, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787601, Length=179, Percent_Identity=28.4916201117318, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87081904, Length=183, Percent_Identity=30.6010928961749, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI2367136, Length=241, Percent_Identity=26.1410788381743, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787530, Length=260, Percent_Identity=25, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787128, Length=159, Percent_Identity=28.9308176100629, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788296, Length=243, Percent_Identity=25.1028806584362, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787806, Length=280, Percent_Identity=22.1428571428571, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786713, Length=186, Percent_Identity=29.0322580645161, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789506, Length=251, Percent_Identity=23.9043824701195, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789173, Length=148, Percent_Identity=31.0810810810811, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1790262, Length=193, Percent_Identity=25.3886010362694, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1790783, Length=216, Percent_Identity=25, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1790011, Length=112, Percent_Identity=29.4642857142857, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789639, Length=122, Percent_Identity=25.4098360655738, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1788626, Length=244, Percent_Identity=27.0491803278689, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI87081978, Length=167, Percent_Identity=28.7425149700599, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32487; Mature: 32487

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNITLRQLRVFIEVARLKSFSRAGDEIGLTQSAVSRSVRELEGEIGLKLIDRTTRDVQLT
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHEECCCCCCEEEE
DVGTNLIASVSRLLGDLDDALREIREIGEQRRGRVIVAASPTIACRLMPRVVAACERRFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCC
FVTLGLRDDVQSDVLRKVKSGEVDFGVVIGPLATSELISEPLMTDSFCLVARADHPLAAR
EEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCEEEEEECCCCCCCC
DRVPWTALAGERLVLLDYASGSRPLIDAALAAHRVAAGVVQELGHSATVFGLVEAGVGVS
CCCCEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCE
VLPWLSLPLPAGSSLVARPLAPRAERTVELVRRRDRSLSPAADAVWGLVKEMPARVEDLN
EHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNITLRQLRVFIEVARLKSFSRAGDEIGLTQSAVSRSVRELEGEIGLKLIDRTTRDVQLT
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHEECCCCCCEEEE
DVGTNLIASVSRLLGDLDDALREIREIGEQRRGRVIVAASPTIACRLMPRVVAACERRFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCC
FVTLGLRDDVQSDVLRKVKSGEVDFGVVIGPLATSELISEPLMTDSFCLVARADHPLAAR
EEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCEEEEEECCCCCCCC
DRVPWTALAGERLVLLDYASGSRPLIDAALAAHRVAAGVVQELGHSATVFGLVEAGVGVS
CCCCEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCE
VLPWLSLPLPAGSSLVARPLAPRAERTVELVRRRDRSLSPAADAVWGLVKEMPARVEDLN
EHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]