| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
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The map label for this gene is ybgO [C]
Identifier: 53719411
GI number: 53719411
Start: 2139356
End: 2140381
Strand: Reverse
Name: ybgO [C]
Synonym: BPSL1798
Alternate gene names: 53719411
Gene position: 2140381-2139356 (Counterclockwise)
Preceding gene: 53719412
Following gene: 53719407
Centisome position: 52.53
GC content: 66.67
Gene sequence:
>1026_bases ATGAGCGCGCTCGCCCGTCTTTTGCCGCGGCGCGCGCCGGGCTGGCTCGCATGGGCGTGCGCGGCGCTTGTCGTCGCGCT CGCGCAGCCCGCGTGGGCGGTGCGCTGCCTGACGAACAGCGGCCAGACCTCGCTCACCGAGCCGATCGGCAACGTCGCGT CGTATCCGACCGACGCGCCGGACGGCTACGTGATCTGGATTTCCGCGCCGCGCACGACGGACGGCTATTGCTACAAGGAT CTCGGCGGCGCGGGCAACCTGAACATCGTCGACAACATCTACTTCTACGCGAATCCGGACGGCAAGAATCCGGCCGCGTG GGGGCTCGAGATCGGCATCCGCTATCGGGGCATCGACCATTTCGGCGCGGGCAGCCGCCCCGGCACCGGTGTGCCGACGG GCTTCGCGGTGCCGCCGTGCTCGCAGACGGACTTCAACGCGAAGCGCTGCCCGAAGATTCCGGTCAGCATCACCTACCAG GTGGTCGTGCGCAAGAAGGGCGCGTGGGTGCAGCCGCCGGGCGATGTCTACACGGTGTTCCAGTTCGACGGCGAGAAGGG CCTGAACAACACGAACCCGAGCTTCCAGTACAAGCTGAGCGGGCTGCAGAACCTGAAGCCGACGCCGTGCATGGTCGACG TGACGGTCACGCCCGAGCCGGGGATCGTCAAGTTCGGGCAGGTCCAGTCGTCCGGCAACGGCTTTTCGCCGGCGGTGCCG CGCAAGCCGTTCAGCCTCGCGTTGACGAAGAAATGCAGCATCGCGGTGCGCGTCGACGGCTACTTCGAGACGTCGCAGAC GGTGCGCGACGGCCTGCTCGTGCCGCAGAGCGACAGCAACTTCGGGATCGGCATCGAGGACAGGAACGGCCACGCGATTG CCTTCAACCGGCAGTTCGTGCTCACGCAGATGCCGGCCAACGTGTCGTATCAGAACATCGTGCTCGATGCGGTGCTGAAG TCGTTCGGCGCGCCGAAGATCGGGCCGTTCACCGGGACGGCGACGATTCGGCTGTTCATCTACTGA
Upstream 100 bases:
>100_bases CGGCGGCGGGCGGCCTGTTCGTCACGCACGTCGACGACTACGGCGGCCAGGTGACGGTCGAATACACGTGCGACGGCCTC GCGTGCCGCAGCGTGAAGCG
Downstream 100 bases:
>100_bases ACCGGGTTCGCCCGCGTGCGCGCTGCAACGGCGCGCGCGCCGCGCGCGCATCACGCCTTCGCGTCGGCCGGTTCGGGCTG GCGGCGCCAGAACGCCCGGT
Product: hypothetical protein
Products: NA
Alternate protein names: Fimbrial Adhesin
Number of amino acids: Translated: 341; Mature: 340
Protein sequence:
>341_residues MSALARLLPRRAPGWLAWACAALVVALAQPAWAVRCLTNSGQTSLTEPIGNVASYPTDAPDGYVIWISAPRTTDGYCYKD LGGAGNLNIVDNIYFYANPDGKNPAAWGLEIGIRYRGIDHFGAGSRPGTGVPTGFAVPPCSQTDFNAKRCPKIPVSITYQ VVVRKKGAWVQPPGDVYTVFQFDGEKGLNNTNPSFQYKLSGLQNLKPTPCMVDVTVTPEPGIVKFGQVQSSGNGFSPAVP RKPFSLALTKKCSIAVRVDGYFETSQTVRDGLLVPQSDSNFGIGIEDRNGHAIAFNRQFVLTQMPANVSYQNIVLDAVLK SFGAPKIGPFTGTATIRLFIY
Sequences:
>Translated_341_residues MSALARLLPRRAPGWLAWACAALVVALAQPAWAVRCLTNSGQTSLTEPIGNVASYPTDAPDGYVIWISAPRTTDGYCYKD LGGAGNLNIVDNIYFYANPDGKNPAAWGLEIGIRYRGIDHFGAGSRPGTGVPTGFAVPPCSQTDFNAKRCPKIPVSITYQ VVVRKKGAWVQPPGDVYTVFQFDGEKGLNNTNPSFQYKLSGLQNLKPTPCMVDVTVTPEPGIVKFGQVQSSGNGFSPAVP RKPFSLALTKKCSIAVRVDGYFETSQTVRDGLLVPQSDSNFGIGIEDRNGHAIAFNRQFVLTQMPANVSYQNIVLDAVLK SFGAPKIGPFTGTATIRLFIY >Mature_340_residues SALARLLPRRAPGWLAWACAALVVALAQPAWAVRCLTNSGQTSLTEPIGNVASYPTDAPDGYVIWISAPRTTDGYCYKDL GGAGNLNIVDNIYFYANPDGKNPAAWGLEIGIRYRGIDHFGAGSRPGTGVPTGFAVPPCSQTDFNAKRCPKIPVSITYQV VVRKKGAWVQPPGDVYTVFQFDGEKGLNNTNPSFQYKLSGLQNLKPTPCMVDVTVTPEPGIVKFGQVQSSGNGFSPAVPR KPFSLALTKKCSIAVRVDGYFETSQTVRDGLLVPQSDSNFGIGIEDRNGHAIAFNRQFVLTQMPANVSYQNIVLDAVLKS FGAPKIGPFTGTATIRLFIY
Specific function: May Be Involved In A Fimbrial System Chaperoned By Ybgp And Exported By Ybgq. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36715; Mature: 36584
Theoretical pI: Translated: 9.28; Mature: 9.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSALARLLPRRAPGWLAWACAALVVALAQPAWAVRCLTNSGQTSLTEPIGNVASYPTDAP CCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCC DGYVIWISAPRTTDGYCYKDLGGAGNLNIVDNIYFYANPDGKNPAAWGLEIGIRYRGIDH CCEEEEEECCCCCCCEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEEEEECCCC FGAGSRPGTGVPTGFAVPPCSQTDFNAKRCPKIPVSITYQVVVRKKGAWVQPPGDVYTVF CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEEEECCCCEECCCCCEEEEE QFDGEKGLNNTNPSFQYKLSGLQNLKPTPCMVDVTVTPEPGIVKFGQVQSSGNGFSPAVP EECCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCC RKPFSLALTKKCSIAVRVDGYFETSQTVRDGLLVPQSDSNFGIGIEDRNGHAIAFNRQFV CCCCEEEEEECEEEEEEECCEECCCHHHHCCEEEECCCCCCEEEEECCCCCEEEEECEEE LTQMPANVSYQNIVLDAVLKSFGAPKIGPFTGTATIRLFIY EEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEC >Mature Secondary Structure SALARLLPRRAPGWLAWACAALVVALAQPAWAVRCLTNSGQTSLTEPIGNVASYPTDAP CHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCC DGYVIWISAPRTTDGYCYKDLGGAGNLNIVDNIYFYANPDGKNPAAWGLEIGIRYRGIDH CCEEEEEECCCCCCCEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEEEEECCCC FGAGSRPGTGVPTGFAVPPCSQTDFNAKRCPKIPVSITYQVVVRKKGAWVQPPGDVYTVF CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEEEECCCCEECCCCCEEEEE QFDGEKGLNNTNPSFQYKLSGLQNLKPTPCMVDVTVTPEPGIVKFGQVQSSGNGFSPAVP EECCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCC RKPFSLALTKKCSIAVRVDGYFETSQTVRDGLLVPQSDSNFGIGIEDRNGHAIAFNRQFV CCCCEEEEEECEEEEEEECCEECCCHHHHCCEEEECCCCCCEEEEECCCCCEEEEECEEE LTQMPANVSYQNIVLDAVLKSFGAPKIGPFTGTATIRLFIY EEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA