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The map label for this gene is ydfH [C]

Identifier: 53719314

GI number: 53719314

Start: 1972586

End: 1973254

Strand: Reverse

Name: ydfH [C]

Synonym: BPSL1695

Alternate gene names: 53719314

Gene position: 1973254-1972586 (Counterclockwise)

Preceding gene: 53719316

Following gene: 53719313

Centisome position: 48.43

GC content: 57.25

Gene sequence:

>669_bases
ATGACATCCAGTTCTAACCAAAAAAACGTAGCCGAGCGGGTCACGGAGCAGATTCGCGAGAGCATTGTGCACGGCAACTT
CGCACCGGGGCAGCGCTTGTCGGAAGCAGCACTAAGCGAAAACCTGCAGATTTCGCGCAATACCTTGCGCGAAATCTTCC
GCATACTGACCAAGGAAGGCCTGCTCAAGCATGAGCCCAACCGCGGCGTGTCCGTGGCAATCCCCAGTATCGCAACCATC
CTTGATATTTACCGAGTGCGCCGCCTGATCGAGTGCCAAGCGATCGCTCAGGCCTACCCGAGCCATCCAGCCAAAAAGCA
CCTGCGCGATGCTGTAGAAATGGGACTGCGTTGCCGCGACAGCGGCGACTGGCAGGGTGTAGGGACCGCCAATATGGAGT
TCCATATGGCTATCGTGGAACTGGCCGACAGCGAGCGCCTGAACGTGATGTTTTCCCACGTACTCGCCGAACTACGCCTA
GCTTTTGGCATGCTGCAGGACCCAGAATTCCTACATGGTCCATATGTCGAGCTGAACCTGCAGATCCTGCAGTTGTTCGA
ATCGGGCAAGCTCGCAGAGTGCGCCACAGCCCTTAACGATTACTTAGCGCAGTCCGAACGCATCGTGCTGTCGGCATGCG
CGCGGCACCCAGTTTTCAAGGCGCGTTGA

Upstream 100 bases:

>100_bases
TCGAATTATTCGCACTAACCTCGCAGATATTGTTCAACAAAATGCGACATCGTTCCCGCGCGAGACATGCCGGAACTAGC
CGCCCTCCGATCAAGCCGAC

Downstream 100 bases:

>100_bases
ATGCTGACTCGGTCGAATCGGCGGTTCGACACGACGCTTTGATGGTGTGCAATTTTGTAATGACCCAACGGAACCTGCTC
AGGGTTAAGCTCGCTACCAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; GntR-Family Transcriptional Regulator; Transcriptional Regulator; GntR Domain-Containing Protein; GntR Family Regulatory; GntR Domain Protein; Transcriptional Regulator Protein; GntR Family Regulatory Protein; Transcriptional Regulator Of Car Operon; Transcriptional Regulator GntR Family Protein; Transcriptional Regulator GntR; HTH-Type Transcriptional Regulator YdhC; Transcriptional Regulator Protein GntR Family; Transcriptional Regulator Gntr Family; GntR Family Transcription Regulator; Naphthalene Degradation Regulatory Protein; Transcription Regulator; Regulatory Protein GntR HTH; Transcriptional Regulator GNTR Family

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MTSSSNQKNVAERVTEQIRESIVHGNFAPGQRLSEAALSENLQISRNTLREIFRILTKEGLLKHEPNRGVSVAIPSIATI
LDIYRVRRLIECQAIAQAYPSHPAKKHLRDAVEMGLRCRDSGDWQGVGTANMEFHMAIVELADSERLNVMFSHVLAELRL
AFGMLQDPEFLHGPYVELNLQILQLFESGKLAECATALNDYLAQSERIVLSACARHPVFKAR

Sequences:

>Translated_222_residues
MTSSSNQKNVAERVTEQIRESIVHGNFAPGQRLSEAALSENLQISRNTLREIFRILTKEGLLKHEPNRGVSVAIPSIATI
LDIYRVRRLIECQAIAQAYPSHPAKKHLRDAVEMGLRCRDSGDWQGVGTANMEFHMAIVELADSERLNVMFSHVLAELRL
AFGMLQDPEFLHGPYVELNLQILQLFESGKLAECATALNDYLAQSERIVLSACARHPVFKAR
>Mature_221_residues
TSSSNQKNVAERVTEQIRESIVHGNFAPGQRLSEAALSENLQISRNTLREIFRILTKEGLLKHEPNRGVSVAIPSIATIL
DIYRVRRLIECQAIAQAYPSHPAKKHLRDAVEMGLRCRDSGDWQGVGTANMEFHMAIVELADSERLNVMFSHVLAELRLA
FGMLQDPEFLHGPYVELNLQILQLFESGKLAECATALNDYLAQSERIVLSACARHPVFKAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24904; Mature: 24773

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSSNQKNVAERVTEQIRESIVHGNFAPGQRLSEAALSENLQISRNTLREIFRILTKEG
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
LLKHEPNRGVSVAIPSIATILDIYRVRRLIECQAIAQAYPSHPAKKHLRDAVEMGLRCRD
HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
SGDWQGVGTANMEFHMAIVELADSERLNVMFSHVLAELRLAFGMLQDPEFLHGPYVELNL
CCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHH
QILQLFESGKLAECATALNDYLAQSERIVLSACARHPVFKAR
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TSSSNQKNVAERVTEQIRESIVHGNFAPGQRLSEAALSENLQISRNTLREIFRILTKEG
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
LLKHEPNRGVSVAIPSIATILDIYRVRRLIECQAIAQAYPSHPAKKHLRDAVEMGLRCRD
HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
SGDWQGVGTANMEFHMAIVELADSERLNVMFSHVLAELRLAFGMLQDPEFLHGPYVELNL
CCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHH
QILQLFESGKLAECATALNDYLAQSERIVLSACARHPVFKAR
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA