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The map label for this gene is ynfJ [C]

Identifier: 53719204

GI number: 53719204

Start: 1825126

End: 1826961

Strand: Reverse

Name: ynfJ [C]

Synonym: BPSL1570

Alternate gene names: 53719204

Gene position: 1826961-1825126 (Counterclockwise)

Preceding gene: 53719205

Following gene: 53719202

Centisome position: 44.84

GC content: 70.42

Gene sequence:

>1836_bases
TTGCCGCGCCGCCGCGCCGCGTGTGCCGGGTCCGCCCCGCGCCCGCGGCGCAATGCTATTCTTCCGCTCGATTTCATCCG
CCGAACCTCGTCCGTCGTGCTCTCGTTCCTGCTCAAGCTGCGCACCCGCGCGCAAACCCTGTTCCGGCTGTCCGACGCGC
ATACGATGCTCGTGTGGTCGGTGATCGTCGGCATCGGCGGCGCGCTCGCGACGGTCGCGTTCCGCGAAGGCATCGAGCTG
ATCCAGCGCGCGATCTCCGGCACGAGCGGCAGCTTCACCGAGATGGCGAAGCGCCTGCCATGGCAGGTGCGGTTCTGGCT
GCCCGCCGCGGGCGGCTTTCTCGCGGGCTGCGTGCTGCTCGTCGCGCAGCGCGGCGCGCGCAAGGAAAGCAAGACCGATT
ACATGGAAGCCGTCGCGCTCGGCGACGGCGTCGTGCCGGTGCGGCAGAGCCTCTGGCGCAGCGCGTCGTCGCTGCTCACG
ATCGGCAGCGGCGGCTCGATCGGCCGCGAAGGCCCGATGGTGCAGCTCGCGGCGCTCGCCGCGTCGCTCGTCGGCCGCTT
CGCGCACTTCGATCCGCCGCGGCTGCGCCTGCTCGTCGCGTGCGGCGCGGCGGCGGGGATCACCTCCGCGTACAACGCGC
CGATCGCGGGCGCGTTCTTCGTCTGCGAGATCGTGCTCGGCTCGATCGCGATGGAGAGCTTCGGGCCCGTCGTCGTCGCC
TCGGTCGTCGCGAACATCGTGATGCGCGAGTTCGCCGGCTACAAGCCGCCGTACCAGATGCCGGTGTTTCCGGCCGTCGC
CGGCTGGGAAGTGCTGTTCTTCGTCGCGCTCGGGCTGCTGTGCGGCGCGGCCGCGCCGCAGTTCCTGCGCCTGCTCGAGC
TGTCCAAGGCGCAGTTCAAGCGCCTGCCCGTCCCGCTGCCCGTGCGGCTCGCCGCGGGCGGGCTCATCGTCGGCGTGATC
TCGGTGTGGGTGCCCGACGTCTGGGGCAACGGCTACAGCGTCGTCAACGCGATCCTGCACGCGCCGTGGACCTGGCAGGC
GCTCGTCGCGGTGCTCGTCCTCAAGCTGATCGCGACCGCCGCGACGGCGGGCTCCGGCGCGATCGGCGGGATCTTCACGC
CGACGCTCTTCGTCGGCGCGGTGGTCGGCTCGCTGTTCGGCATCGCGCTGCACGCGCTGCTGCCCGCGCACGTGTCCGCG
TGGTACGCGTACGCGATGGTCGGCATGGGCGCGTTCCTCGCGGGCGCGACGCAGGCGCCGCTGATGGCGATCCTGATGAT
CTTCGAGATGACGCTCAGCTACCAGGTCGTGCTGCCGCTGATGGTGTCGTGCGTCGTCGCGTATTTCGCGGCGCGCGCGC
TCGGCAAGACCTCGATGTACGAGATCACGCTGCGCCGCCACCGCGACGACGAGGCGCGCACGCGCCTGCGCACCGCGCAG
ATGCGCGACCTGATCCAGCCGGCCGCGACCGTCGTGCCGCTCACGGCGAGCGTCGCCGACATGACGCGCGTGTTTCTCGA
ATATCCGGTCAAGTACCTGTACGTGACGGACGATGCCGGGCGCTTCCGCGGCGCGGTCGCGCTCAAGGACATCACGTCCG
ACCTGCTCGAGAAGCGCGACACGACGCACAAAAGCGCGGCGAACTACCTGCACACGCCGTTTCCGCTCCTCACGCCCGAC
ATGCCGATCGGCGCGGCGCTCGAGCACTTCATGCGGTTCCAGGGCGAGCGGCTGCCCGTCGTCGAGCGCGCGGACGATCC
GACGCTCGCGGGCGTCGTCTACAAGACGTCGCTGCTCGATGCGTATCGCCGGATGAACATGGATCTCGAACGTTGA

Upstream 100 bases:

>100_bases
GCGCTGATGACGGGCCTCATCCTGTATGCGTGGCTCGTCTTCGGCGGCTATGCGATCGTCTGGGCGACGCAGCGCTGGCT
GGGCTGAACCGCCGCCCGCC

Downstream 100 bases:

>100_bases
GCGCCCGCGCGCAGCCGGCCGGCGACCGAACGCCGCCGCGCGGCTTCGCCGGCGAAGCCGCGCCCGGGCCGGCAAAGGCG
CGCGCGCCTCGCGCAGCGGA

Product: putative voltage-gated ClC-type chloride channel ClcB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 611; Mature: 610

Protein sequence:

>611_residues
MPRRRAACAGSAPRPRRNAILPLDFIRRTSSVVLSFLLKLRTRAQTLFRLSDAHTMLVWSVIVGIGGALATVAFREGIEL
IQRAISGTSGSFTEMAKRLPWQVRFWLPAAGGFLAGCVLLVAQRGARKESKTDYMEAVALGDGVVPVRQSLWRSASSLLT
IGSGGSIGREGPMVQLAALAASLVGRFAHFDPPRLRLLVACGAAAGITSAYNAPIAGAFFVCEIVLGSIAMESFGPVVVA
SVVANIVMREFAGYKPPYQMPVFPAVAGWEVLFFVALGLLCGAAAPQFLRLLELSKAQFKRLPVPLPVRLAAGGLIVGVI
SVWVPDVWGNGYSVVNAILHAPWTWQALVAVLVLKLIATAATAGSGAIGGIFTPTLFVGAVVGSLFGIALHALLPAHVSA
WYAYAMVGMGAFLAGATQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFAARALGKTSMYEITLRRHRDDEARTRLRTAQ
MRDLIQPAATVVPLTASVADMTRVFLEYPVKYLYVTDDAGRFRGAVALKDITSDLLEKRDTTHKSAANYLHTPFPLLTPD
MPIGAALEHFMRFQGERLPVVERADDPTLAGVVYKTSLLDAYRRMNMDLER

Sequences:

>Translated_611_residues
MPRRRAACAGSAPRPRRNAILPLDFIRRTSSVVLSFLLKLRTRAQTLFRLSDAHTMLVWSVIVGIGGALATVAFREGIEL
IQRAISGTSGSFTEMAKRLPWQVRFWLPAAGGFLAGCVLLVAQRGARKESKTDYMEAVALGDGVVPVRQSLWRSASSLLT
IGSGGSIGREGPMVQLAALAASLVGRFAHFDPPRLRLLVACGAAAGITSAYNAPIAGAFFVCEIVLGSIAMESFGPVVVA
SVVANIVMREFAGYKPPYQMPVFPAVAGWEVLFFVALGLLCGAAAPQFLRLLELSKAQFKRLPVPLPVRLAAGGLIVGVI
SVWVPDVWGNGYSVVNAILHAPWTWQALVAVLVLKLIATAATAGSGAIGGIFTPTLFVGAVVGSLFGIALHALLPAHVSA
WYAYAMVGMGAFLAGATQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFAARALGKTSMYEITLRRHRDDEARTRLRTAQ
MRDLIQPAATVVPLTASVADMTRVFLEYPVKYLYVTDDAGRFRGAVALKDITSDLLEKRDTTHKSAANYLHTPFPLLTPD
MPIGAALEHFMRFQGERLPVVERADDPTLAGVVYKTSLLDAYRRMNMDLER
>Mature_610_residues
PRRRAACAGSAPRPRRNAILPLDFIRRTSSVVLSFLLKLRTRAQTLFRLSDAHTMLVWSVIVGIGGALATVAFREGIELI
QRAISGTSGSFTEMAKRLPWQVRFWLPAAGGFLAGCVLLVAQRGARKESKTDYMEAVALGDGVVPVRQSLWRSASSLLTI
GSGGSIGREGPMVQLAALAASLVGRFAHFDPPRLRLLVACGAAAGITSAYNAPIAGAFFVCEIVLGSIAMESFGPVVVAS
VVANIVMREFAGYKPPYQMPVFPAVAGWEVLFFVALGLLCGAAAPQFLRLLELSKAQFKRLPVPLPVRLAAGGLIVGVIS
VWVPDVWGNGYSVVNAILHAPWTWQALVAVLVLKLIATAATAGSGAIGGIFTPTLFVGAVVGSLFGIALHALLPAHVSAW
YAYAMVGMGAFLAGATQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFAARALGKTSMYEITLRRHRDDEARTRLRTAQM
RDLIQPAATVVPLTASVADMTRVFLEYPVKYLYVTDDAGRFRGAVALKDITSDLLEKRDTTHKSAANYLHTPFPLLTPDM
PIGAALEHFMRFQGERLPVVERADDPTLAGVVYKTSLLDAYRRMNMDLER

Specific function: Unknown

COG id: COG0038

COG function: function code P; Chloride channel protein EriC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the chloride channel (TC 2.A.49) family. ClcB subfamily [H]

Homologues:

Organism=Homo sapiens, GI55770840, Length=428, Percent_Identity=23.8317757009346, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI55770838, Length=429, Percent_Identity=24.2424242424242, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI189217923, Length=136, Percent_Identity=30.8823529411765, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI189217921, Length=136, Percent_Identity=30.8823529411765, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI4557473, Length=136, Percent_Identity=30.8823529411765, Blast_Score=69, Evalue=1e-11,
Organism=Escherichia coli, GI87081943, Length=421, Percent_Identity=38.9548693586698, Blast_Score=202, Evalue=5e-53,
Organism=Escherichia coli, GI1786350, Length=326, Percent_Identity=27.6073619631902, Blast_Score=89, Evalue=8e-19,
Organism=Drosophila melanogaster, GI24665008, Length=400, Percent_Identity=24, Blast_Score=81, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014743
- InterPro:   IPR001807 [H]

Pfam domain/function: PF00654 Voltage_CLC [H]

EC number: NA

Molecular weight: Translated: 65846; Mature: 65715

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRRRAACAGSAPRPRRNAILPLDFIRRTSSVVLSFLLKLRTRAQTLFRLSDAHTMLVWS
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
VIVGIGGALATVAFREGIELIQRAISGTSGSFTEMAKRLPWQVRFWLPAAGGFLAGCVLL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEEECCCCHHHHHHHHH
VAQRGARKESKTDYMEAVALGDGVVPVRQSLWRSASSLLTIGSGGSIGREGPMVQLAALA
HHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHH
ASLVGRFAHFDPPRLRLLVACGAAAGITSAYNAPIAGAFFVCEIVLGSIAMESFGPVVVA
HHHHHHHHCCCCHHHHHHHHHCCHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHH
SVVANIVMREFAGYKPPYQMPVFPAVAGWEVLFFVALGLLCGAAAPQFLRLLELSKAQFK
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
RLPVPLPVRLAAGGLIVGVISVWVPDVWGNGYSVVNAILHAPWTWQALVAVLVLKLIATA
CCCCCCCHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
ATAGSGAIGGIFTPTLFVGAVVGSLFGIALHALLPAHVSAWYAYAMVGMGAFLAGATQAP
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LMAILMIFEMTLSYQVVLPLMVSCVVAYFAARALGKTSMYEITLRRHRDDEARTRLRTAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEHHHHCCCHHHHHHHHHHH
MRDLIQPAATVVPLTASVADMTRVFLEYPVKYLYVTDDAGRFRGAVALKDITSDLLEKRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHC
TTHKSAANYLHTPFPLLTPDMPIGAALEHFMRFQGERLPVVERADDPTLAGVVYKTSLLD
CCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHH
AYRRMNMDLER
HHHHHCCCCCC
>Mature Secondary Structure 
PRRRAACAGSAPRPRRNAILPLDFIRRTSSVVLSFLLKLRTRAQTLFRLSDAHTMLVWS
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
VIVGIGGALATVAFREGIELIQRAISGTSGSFTEMAKRLPWQVRFWLPAAGGFLAGCVLL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEEECCCCHHHHHHHHH
VAQRGARKESKTDYMEAVALGDGVVPVRQSLWRSASSLLTIGSGGSIGREGPMVQLAALA
HHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHH
ASLVGRFAHFDPPRLRLLVACGAAAGITSAYNAPIAGAFFVCEIVLGSIAMESFGPVVVA
HHHHHHHHCCCCHHHHHHHHHCCHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHH
SVVANIVMREFAGYKPPYQMPVFPAVAGWEVLFFVALGLLCGAAAPQFLRLLELSKAQFK
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
RLPVPLPVRLAAGGLIVGVISVWVPDVWGNGYSVVNAILHAPWTWQALVAVLVLKLIATA
CCCCCCCHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
ATAGSGAIGGIFTPTLFVGAVVGSLFGIALHALLPAHVSAWYAYAMVGMGAFLAGATQAP
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LMAILMIFEMTLSYQVVLPLMVSCVVAYFAARALGKTSMYEITLRRHRDDEARTRLRTAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEHHHHCCCHHHHHHHHHHH
MRDLIQPAATVVPLTASVADMTRVFLEYPVKYLYVTDDAGRFRGAVALKDITSDLLEKRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHC
TTHKSAANYLHTPFPLLTPDMPIGAALEHFMRFQGERLPVVERADDPTLAGVVYKTSLLD
CCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHH
AYRRMNMDLER
HHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]