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The map label for this gene is ydiU [C]

Identifier: 53719058

GI number: 53719058

Start: 1656794

End: 1658371

Strand: Reverse

Name: ydiU [C]

Synonym: BPSL1422

Alternate gene names: 53719058

Gene position: 1658371-1656794 (Counterclockwise)

Preceding gene: 53719063

Following gene: 53719057

Centisome position: 40.7

GC content: 70.53

Gene sequence:

>1578_bases
ATGGGCAGCAATATGTCGTTTTCCAGAAGCGAGGCCGCACCGGCCGCCCCTCTCCCCGATCTCGCCGCGACGCTCGCCGC
GCCGCGCGACGATGCGTTCCAGCAACTCGGCGCCGCGTTCGTCACGCGGCTGCCCGCCGCGCCGCTGCCCGCGCCGTACG
TCGTCGGCTTCTCCGACGACGCGGCGCGCATGCTCGGCCTCGAGCCCGCGCTGCGCGACGCGCCCGGCTTCGCCGAGCTG
TTCTGCGGCAACCCGACGCGCGACTGGCCGCAGGCGTCGCTGCCGTACGCGTCGGTCTATTCGGGCCACCAGTTCGGCGT
GTGGGCGGGCCAGCTCGGCGACGGGCGCGCGCTCACCATCGGCGAACTCGCGCACGACGGCCGCCGCTACGAGCTGCAGT
TAAAGGGCGCGGGACGCACGCCGTATTCGCGCATGGGCGACGGCCGCGCGGTGCTGCGCTCGTCGATCCGCGAGTTCCTC
TGCTCGGAGGCGATGCACCATCTCGGCATACCGACGACGCGCGCGCTCGCCGTGATCGGCTCCGACCAGCCGGTGGTCCG
CGAGGAAATCGAGACGTCGGCGGTCGTCACGCGCGTCGCGCAAAGCTTCGTGCGCTTCGGCCATTTCGAGCACTTCTTCG
CGAACGATCGGCCCGAGCAGTTGCGCGCGCTCGCCGATCACGTGATCGAGCGTTTCTATCCGGCCTGCCGCGACGCCGAC
GATCCGTATCTCGCGCTGCTCGCGGAAGCGACGCGGCGCACCGCGGAGCTCGTCGCGCAATGGCAGGCGGTCGGCTTCTG
CCACGGCGTGATGAACACCGACAACATGTCGATCCTCGGCCTGACGATCGACTACGGCCCGTTCGGCTTCATCGACGCGT
TCGACGCGAAGCACGTGTGCAACCATTCGGACACGCAGGGCCGCTACGCCTACCGGATGCAGCCGCGCATCGCGCACTGG
AACTGCTTCTGCCTCGCGCAGGCGCTGCTGCCGCTCATCGGCCTGCACCGCGACGCGCCGAGCGAAGACGCGCGCGCCGA
GCGCGCGGTCGAGGACGCGCACGCGGTGCTCGGCCGCTTTCCCGAGCAATTCGGCCCCGCGCTCGAGCGCGCGATGCGCG
CGAAGCTCGGCCTCGCGCTCGAACGCGAGGGCGACGCGGCGCTCGCGAACCAGTTGCTCGAGATCATGGATGCGAGCCAT
GCCGATTTCACGCTGACGTTTCGCCATCTCGCGCGCGTGTCGAAGCACGACGCGCGCGGCGACGCGCCCGTGCGGGATCT
GTTCATCGATCGCGACGCGTTCGATCGCTGGGCGAACCTCTATCGCGCGCGCCTGTCGGAAGAAGCGCGCGACGACGCGT
CGCGCGCGGCCGCGATGAACCGCGTGAACCCGAAATACGTGCTGCGCAACCACCTCGCGGAAACGGCGATCCGCCGCGCG
AAGGAGAAGGATTTTTCGGAGGTCGAGCGCCTCGCGGCCGTGCTGCGGCGCCCGTTCGACGAGCAGCCGGAGCACGACGC
GTATGCGGCGCTGCCGCCCGACTGGGCGAGCACGCTCGAGGTGAGCTGCTCGTCGTGA

Upstream 100 bases:

>100_bases
TGAAGTATTTGTCCGATACGGTCTGCTGCAAACGGCTCGGCGGCGCGCGGACGGCTTCGAGCGCCCCGCGCGGCGCGGAC
TTACAATATCGGCTAACTCA

Downstream 100 bases:

>100_bases
CGCCGCCGGCACGCCGTGCGTTGCGCATGAATTCATCAGGAGAATCGAAGATGTCAGGAGATCGAGACGACCCGCGTTAT
CCCTACCCGAAGGACGACGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 525; Mature: 524

Protein sequence:

>525_residues
MGSNMSFSRSEAAPAAPLPDLAATLAAPRDDAFQQLGAAFVTRLPAAPLPAPYVVGFSDDAARMLGLEPALRDAPGFAEL
FCGNPTRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTIGELAHDGRRYELQLKGAGRTPYSRMGDGRAVLRSSIREFL
CSEAMHHLGIPTTRALAVIGSDQPVVREEIETSAVVTRVAQSFVRFGHFEHFFANDRPEQLRALADHVIERFYPACRDAD
DPYLALLAEATRRTAELVAQWQAVGFCHGVMNTDNMSILGLTIDYGPFGFIDAFDAKHVCNHSDTQGRYAYRMQPRIAHW
NCFCLAQALLPLIGLHRDAPSEDARAERAVEDAHAVLGRFPEQFGPALERAMRAKLGLALEREGDAALANQLLEIMDASH
ADFTLTFRHLARVSKHDARGDAPVRDLFIDRDAFDRWANLYRARLSEEARDDASRAAAMNRVNPKYVLRNHLAETAIRRA
KEKDFSEVERLAAVLRRPFDEQPEHDAYAALPPDWASTLEVSCSS

Sequences:

>Translated_525_residues
MGSNMSFSRSEAAPAAPLPDLAATLAAPRDDAFQQLGAAFVTRLPAAPLPAPYVVGFSDDAARMLGLEPALRDAPGFAEL
FCGNPTRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTIGELAHDGRRYELQLKGAGRTPYSRMGDGRAVLRSSIREFL
CSEAMHHLGIPTTRALAVIGSDQPVVREEIETSAVVTRVAQSFVRFGHFEHFFANDRPEQLRALADHVIERFYPACRDAD
DPYLALLAEATRRTAELVAQWQAVGFCHGVMNTDNMSILGLTIDYGPFGFIDAFDAKHVCNHSDTQGRYAYRMQPRIAHW
NCFCLAQALLPLIGLHRDAPSEDARAERAVEDAHAVLGRFPEQFGPALERAMRAKLGLALEREGDAALANQLLEIMDASH
ADFTLTFRHLARVSKHDARGDAPVRDLFIDRDAFDRWANLYRARLSEEARDDASRAAAMNRVNPKYVLRNHLAETAIRRA
KEKDFSEVERLAAVLRRPFDEQPEHDAYAALPPDWASTLEVSCSS
>Mature_524_residues
GSNMSFSRSEAAPAAPLPDLAATLAAPRDDAFQQLGAAFVTRLPAAPLPAPYVVGFSDDAARMLGLEPALRDAPGFAELF
CGNPTRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTIGELAHDGRRYELQLKGAGRTPYSRMGDGRAVLRSSIREFLC
SEAMHHLGIPTTRALAVIGSDQPVVREEIETSAVVTRVAQSFVRFGHFEHFFANDRPEQLRALADHVIERFYPACRDADD
PYLALLAEATRRTAELVAQWQAVGFCHGVMNTDNMSILGLTIDYGPFGFIDAFDAKHVCNHSDTQGRYAYRMQPRIAHWN
CFCLAQALLPLIGLHRDAPSEDARAERAVEDAHAVLGRFPEQFGPALERAMRAKLGLALEREGDAALANQLLEIMDASHA
DFTLTFRHLARVSKHDARGDAPVRDLFIDRDAFDRWANLYRARLSEEARDDASRAAAMNRVNPKYVLRNHLAETAIRRAK
EKDFSEVERLAAVLRRPFDEQPEHDAYAALPPDWASTLEVSCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=489, Percent_Identity=43.1492842535787, Blast_Score=308, Evalue=6e-84,
Organism=Escherichia coli, GI1787999, Length=432, Percent_Identity=50.9259259259259, Blast_Score=422, Evalue=1e-119,
Organism=Saccharomyces cerevisiae, GI6325034, Length=396, Percent_Identity=33.8383838383838, Blast_Score=198, Evalue=2e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 58050; Mature: 57919

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSNMSFSRSEAAPAAPLPDLAATLAAPRDDAFQQLGAAFVTRLPAAPLPAPYVVGFSDD
CCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCC
AARMLGLEPALRDAPGFAELFCGNPTRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTI
HHHHHCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCEEEH
GELAHDGRRYELQLKGAGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRALAVIG
HHHHCCCCEEEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEC
SDQPVVREEIETSAVVTRVAQSFVRFGHFEHFFANDRPEQLRALADHVIERFYPACRDAD
CCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
DPYLALLAEATRRTAELVAQWQAVGFCHGVMNTDNMSILGLTIDYGPFGFIDAFDAKHVC
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCHHHHC
NHSDTQGRYAYRMQPRIAHWNCFCLAQALLPLIGLHRDAPSEDARAERAVEDAHAVLGRF
CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
PEQFGPALERAMRAKLGLALEREGDAALANQLLEIMDASHADFTLTFRHLARVSKHDARG
HHHHCHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
DAPVRDLFIDRDAFDRWANLYRARLSEEARDDASRAAAMNRVNPKYVLRNHLAETAIRRA
CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
KEKDFSEVERLAAVLRRPFDEQPEHDAYAALPPDWASTLEVSCSS
HHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHEEEECCC
>Mature Secondary Structure 
GSNMSFSRSEAAPAAPLPDLAATLAAPRDDAFQQLGAAFVTRLPAAPLPAPYVVGFSDD
CCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCC
AARMLGLEPALRDAPGFAELFCGNPTRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTI
HHHHHCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCEEEH
GELAHDGRRYELQLKGAGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRALAVIG
HHHHCCCCEEEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEC
SDQPVVREEIETSAVVTRVAQSFVRFGHFEHFFANDRPEQLRALADHVIERFYPACRDAD
CCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
DPYLALLAEATRRTAELVAQWQAVGFCHGVMNTDNMSILGLTIDYGPFGFIDAFDAKHVC
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCHHHHC
NHSDTQGRYAYRMQPRIAHWNCFCLAQALLPLIGLHRDAPSEDARAERAVEDAHAVLGRF
CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
PEQFGPALERAMRAKLGLALEREGDAALANQLLEIMDASHADFTLTFRHLARVSKHDARG
HHHHCHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
DAPVRDLFIDRDAFDRWANLYRARLSEEARDDASRAAAMNRVNPKYVLRNHLAETAIRRA
CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
KEKDFSEVERLAAVLRRPFDEQPEHDAYAALPPDWASTLEVSCSS
HHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA