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The map label for this gene is ygeR [H]

Identifier: 53719020

GI number: 53719020

Start: 1610849

End: 1611562

Strand: Reverse

Name: ygeR [H]

Synonym: BPSL1381

Alternate gene names: 53719020

Gene position: 1611562-1610849 (Counterclockwise)

Preceding gene: 53719021

Following gene: 53719019

Centisome position: 39.55

GC content: 69.61

Gene sequence:

>714_bases
TTGCGAGGTTCAATGTTGCTGAAAACCACGAGACGGCTCGTCGTCGCATCGCTCGCCGCGCTGCTCGCCGCGTGCGGCTC
GGCGCCCGTCGGCCCCGGCTTCTACCGGGTCGAGCGCGGCGACACGCTCTCCAAGATCGCGCGATCGAATCGCCAATCGG
TCGCGAATATCGCCCGCTGGAACCAGATCACGAATCCCGACGCGATCGAAGTCGGCCAGGTGCTGCGCGTCGCGCCGCCG
CCGGGCACCGCGTCGACCTCGGGCACGACGGGCGCATCGCGCGGCCCGAGCCGCCAGGCGCCCTCGTCGTCCGCCACGTC
GCCCGCGTCGTCCGTGAAACCGGCGTCGAGCATCTCGCTCGTCTGGCCCGCCGCCGGCAGTGTGATCCGCTCGTTCGACG
GATCGAAATCGAAAGGCATCGACATCGCGAACACCGCCGGCACGCCGGTCATCGCGGCGGCGGCCGGCACGGTCGTCTAC
GCGGGCAACGGCCTGCGCGGCTACGGCAACCTGCTGATCGTCAAGCACGACGCCGATTTCCTGACGACCTACGCGCACAA
CCGCGCGCTACTCGTGAAGGAAGGCCAGACGGTCGCGCAGGGGCAGAAAATCGCGGAGATGGGCGATACCGACAACGACC
GCGTCGCGCTGCACTTCGAGCTGCGCTACGGCGGGCGCTCGATCGATCCCGCGCGCTACCTGCCGTCGCGCTGA

Upstream 100 bases:

>100_bases
GCCTTCAGCGCCTCCGCGGCCCCGAAACCGCGAGCCCGCCGCCGAACCCGTTAAAATCGGACGTTTTTGTCCCGCCGTCG
CGCACCGCCGCGACGGCGCC

Downstream 100 bases:

>100_bases
CGCGGCGGCGCGCCACGCAGAACGCGGCGCGTCGTGCGCATTCCGGCGAGCGCCGGGCGAGCGGATCGAGAAAACGATCA
GCGTTTGCGCAGCCGGCCGT

Product: peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MRGSMLLKTTRRLVVASLAALLAACGSAPVGPGFYRVERGDTLSKIARSNRQSVANIARWNQITNPDAIEVGQVLRVAPP
PGTASTSGTTGASRGPSRQAPSSSATSPASSVKPASSISLVWPAAGSVIRSFDGSKSKGIDIANTAGTPVIAAAAGTVVY
AGNGLRGYGNLLIVKHDADFLTTYAHNRALLVKEGQTVAQGQKIAEMGDTDNDRVALHFELRYGGRSIDPARYLPSR

Sequences:

>Translated_237_residues
MRGSMLLKTTRRLVVASLAALLAACGSAPVGPGFYRVERGDTLSKIARSNRQSVANIARWNQITNPDAIEVGQVLRVAPP
PGTASTSGTTGASRGPSRQAPSSSATSPASSVKPASSISLVWPAAGSVIRSFDGSKSKGIDIANTAGTPVIAAAAGTVVY
AGNGLRGYGNLLIVKHDADFLTTYAHNRALLVKEGQTVAQGQKIAEMGDTDNDRVALHFELRYGGRSIDPARYLPSR
>Mature_237_residues
MRGSMLLKTTRRLVVASLAALLAACGSAPVGPGFYRVERGDTLSKIARSNRQSVANIARWNQITNPDAIEVGQVLRVAPP
PGTASTSGTTGASRGPSRQAPSSSATSPASSVKPASSISLVWPAAGSVIRSFDGSKSKGIDIANTAGTPVIAAAAGTVVY
AGNGLRGYGNLLIVKHDADFLTTYAHNRALLVKEGQTVAQGQKIAEMGDTDNDRVALHFELRYGGRSIDPARYLPSR

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=232, Percent_Identity=45.6896551724138, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1789099, Length=118, Percent_Identity=56.7796610169492, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI87082297, Length=120, Percent_Identity=32.5, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 24628; Mature: 24628

Theoretical pI: Translated: 10.89; Mature: 10.89

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGSMLLKTTRRLVVASLAALLAACGSAPVGPGFYRVERGDTLSKIARSNRQSVANIARW
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHH
NQITNPDAIEVGQVLRVAPPPGTASTSGTTGASRGPSRQAPSSSATSPASSVKPASSISL
CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
VWPAAGSVIRSFDGSKSKGIDIANTAGTPVIAAAAGTVVYAGNGLRGYGNLLIVKHDADF
EECCCCHHHHHCCCCCCCCCEEECCCCCCEEEECCCEEEEECCCCCCCCCEEEEEECCCC
LTTYAHNRALLVKEGQTVAQGQKIAEMGDTDNDRVALHFELRYGGRSIDPARYLPSR
EEHHCCCEEEEEECCCHHHHCHHHHHCCCCCCCEEEEEEEEEECCCCCCHHHCCCCC
>Mature Secondary Structure
MRGSMLLKTTRRLVVASLAALLAACGSAPVGPGFYRVERGDTLSKIARSNRQSVANIARW
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHH
NQITNPDAIEVGQVLRVAPPPGTASTSGTTGASRGPSRQAPSSSATSPASSVKPASSISL
CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
VWPAAGSVIRSFDGSKSKGIDIANTAGTPVIAAAAGTVVYAGNGLRGYGNLLIVKHDADF
EECCCCHHHHHCCCCCCCCCEEECCCCCCEEEECCCEEEEECCCCCCCCCEEEEEECCCC
LTTYAHNRALLVKEGQTVAQGQKIAEMGDTDNDRVALHFELRYGGRSIDPARYLPSR
EEHHCCCEEEEEECCCHHHHCHHHHHCCCCCCCEEEEEEEEEECCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]