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The map label for this gene is yhcK [H]

Identifier: 53718944

GI number: 53718944

Start: 1524128

End: 1525492

Strand: Reverse

Name: yhcK [H]

Synonym: BPSL1306

Alternate gene names: 53718944

Gene position: 1525492-1524128 (Counterclockwise)

Preceding gene: 53718947

Following gene: 53718943

Centisome position: 37.44

GC content: 65.93

Gene sequence:

>1365_bases
GTGATCGGCACGATCGCCCGGCTCTACACCGCATGCCTGCTGATCGGCTTCGCGCTCGTGCCGGCGTTCCTGATCGCCTA
TGTGCGGTTCTTCATCGATCCGCGGCTCGTCTTCGAGAACCATCAGTTCCACGAACTGGCGATCGCCGCCGCGACGCTCG
AGGGGCTGTTCGTCACCTACGTCACATGGCGCTGCTATCTGGCGTCGGGCGAGCCGCTGCTGCGCTGGCTCACGCTCGGC
TTCCTCGGCTTCGCGCTGATCTATTCGCTGCACGGCGCGTTCACCGGCATGGCGCACCAGAACATCTGGCTGTTCCTGCT
GTACGGGCCCGCATCGCGCCTCGTGATGTCGATCCTGCTGCTCGTCGGGCAACTGTCGTACTTCCGCGACGCCGATCCAC
CGGAGCGCCGCACGCATCTGTCGATGTGGCTGCCGTGGATCGCCGGCTACGTCGTCGTGTGCTTCGCCGTGGCCGCGATC
GCGTATTCGCCGATCGCCGGCCATCTGTGGACGCGCGCATCGATGGAGGGCGGCGCGATGATCGTGTCGCTCGTCAACGT
CGCGCTGCTGCTCGTGCGGCGCATCCGCACGCCGCTGATGCTCGTCTACGGCATCTCGGTGACGTCGTTCGCGCTGTCGT
CGATCGCGTTCATTTTCGGCAAGCCGTGGAATCACATGTGGTGGCTCGCGCACGCGGTCTTCGCGGGCGGCTTCTTCATG
CTGAGCTTCGGCGTCGTGCAGGCGCTGATGACGACCCGCTCGTTCGCGACCGTCTACAGCCAGCAGGACTTGATGGCGCG
GCTCGCCGAATCGATGGCGCGCACCGAGGGCGTGCTGCAGGAGCTCAAGCGCACCAATCAGAAGCTCGAGCACCTCGCGA
CCACCGATCCGCTGACGGGCGCGTCGAACCGGCGCAAGTTCATCGAGCAGATGCAATCGGAGATCGCGCGCGCGAAACGC
GACGGCACCGCGTTCTCGCTGCTCGCGCTCGATCTCGACAACTTCAAGACGATCAACGACAACTACGGCCATCAGGTCGG
CGACGTCGTGCTGCGCAATTTCGTGCGCCAGTGCCTCGCCGCGATTCGCCCTTACGACCACATCGCGCGCGTCGGCGGCG
AGGAATTCATGGTGCTGCTGCCGCGCATGCTCGCCGACACGGCGAGCGGCATCGCCGAGCGGGTGCGGACCACGATCGCG
AACGCATCGTTCGGCATCGACGGCAAGCACACGCCCGTGACCGTGAGCATCGGCGTGTCGCAGTACGGGCGCGATGGCGA
CACCGTCGACGAAATCCTGAGCGCCGCCGACAAGCTGCTCTATCGCGCGAAGAACGAGGGGCGCAATCGCGTCGTCGCGT
CGTAG

Upstream 100 bases:

>100_bases
TCGCCGCCCGGCGTCCCGCGCGGATTTCCCACTTCGATCCAGGAACAGCGTTGCGGAGGCCACCGTGAGCACCGTCTTCA
CAGCCCATGAATCGCCGCGT

Downstream 100 bases:

>100_bases
ACCCTCGTCAGCCGCGGGACAGCGGAGCGGGCGGGACGGCCCGATCGGCGGCGATCCGGCGCGCGCCACCGGGATCGCAA
GCCACGGCGCGGCGATTCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 454; Mature: 454

Protein sequence:

>454_residues
MIGTIARLYTACLLIGFALVPAFLIAYVRFFIDPRLVFENHQFHELAIAAATLEGLFVTYVTWRCYLASGEPLLRWLTLG
FLGFALIYSLHGAFTGMAHQNIWLFLLYGPASRLVMSILLLVGQLSYFRDADPPERRTHLSMWLPWIAGYVVVCFAVAAI
AYSPIAGHLWTRASMEGGAMIVSLVNVALLLVRRIRTPLMLVYGISVTSFALSSIAFIFGKPWNHMWWLAHAVFAGGFFM
LSFGVVQALMTTRSFATVYSQQDLMARLAESMARTEGVLQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQSEIARAKR
DGTAFSLLALDLDNFKTINDNYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRTTIA
NASFGIDGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVAS

Sequences:

>Translated_454_residues
MIGTIARLYTACLLIGFALVPAFLIAYVRFFIDPRLVFENHQFHELAIAAATLEGLFVTYVTWRCYLASGEPLLRWLTLG
FLGFALIYSLHGAFTGMAHQNIWLFLLYGPASRLVMSILLLVGQLSYFRDADPPERRTHLSMWLPWIAGYVVVCFAVAAI
AYSPIAGHLWTRASMEGGAMIVSLVNVALLLVRRIRTPLMLVYGISVTSFALSSIAFIFGKPWNHMWWLAHAVFAGGFFM
LSFGVVQALMTTRSFATVYSQQDLMARLAESMARTEGVLQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQSEIARAKR
DGTAFSLLALDLDNFKTINDNYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRTTIA
NASFGIDGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVAS
>Mature_454_residues
MIGTIARLYTACLLIGFALVPAFLIAYVRFFIDPRLVFENHQFHELAIAAATLEGLFVTYVTWRCYLASGEPLLRWLTLG
FLGFALIYSLHGAFTGMAHQNIWLFLLYGPASRLVMSILLLVGQLSYFRDADPPERRTHLSMWLPWIAGYVVVCFAVAAI
AYSPIAGHLWTRASMEGGAMIVSLVNVALLLVRRIRTPLMLVYGISVTSFALSSIAFIFGKPWNHMWWLAHAVFAGGFFM
LSFGVVQALMTTRSFATVYSQQDLMARLAESMARTEGVLQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQSEIARAKR
DGTAFSLLALDLDNFKTINDNYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRTTIA
NASFGIDGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVAS

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=182, Percent_Identity=44.5054945054945, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1787262, Length=169, Percent_Identity=38.4615384615385, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI145693134, Length=162, Percent_Identity=35.1851851851852, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788381, Length=177, Percent_Identity=32.7683615819209, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI87082007, Length=161, Percent_Identity=38.5093167701863, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI1786584, Length=170, Percent_Identity=32.3529411764706, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1788085, Length=179, Percent_Identity=33.5195530726257, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787802, Length=162, Percent_Identity=35.1851851851852, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1787816, Length=160, Percent_Identity=31.875, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1787541, Length=170, Percent_Identity=32.3529411764706, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI87081974, Length=170, Percent_Identity=26.4705882352941, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI87081977, Length=182, Percent_Identity=30.2197802197802, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788956, Length=173, Percent_Identity=32.3699421965318, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 50502; Mature: 50502

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGTIARLYTACLLIGFALVPAFLIAYVRFFIDPRLVFENHQFHELAIAAATLEGLFVTY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHHHHHHHHH
VTWRCYLASGEPLLRWLTLGFLGFALIYSLHGAFTGMAHQNIWLFLLYGPASRLVMSILL
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHH
LVGQLSYFRDADPPERRTHLSMWLPWIAGYVVVCFAVAAIAYSPIAGHLWTRASMEGGAM
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHH
IVSLVNVALLLVRRIRTPLMLVYGISVTSFALSSIAFIFGKPWNHMWWLAHAVFAGGFFM
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LSFGVVQALMTTRSFATVYSQQDLMARLAESMARTEGVLQELKRTNQKLEHLATTDPLTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFKTINDNYGHQVGDVVLRNFVRQCLA
CHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEECCCCCCHHHHHHHHHHHHHHHHH
AIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRTTIANASFGIDGKHTPVTVSIGVS
HHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECHH
QYGRDGDTVDEILSAADKLLYRAKNEGRNRVVAS
HCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MIGTIARLYTACLLIGFALVPAFLIAYVRFFIDPRLVFENHQFHELAIAAATLEGLFVTY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHHHHHHHHH
VTWRCYLASGEPLLRWLTLGFLGFALIYSLHGAFTGMAHQNIWLFLLYGPASRLVMSILL
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHH
LVGQLSYFRDADPPERRTHLSMWLPWIAGYVVVCFAVAAIAYSPIAGHLWTRASMEGGAM
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHH
IVSLVNVALLLVRRIRTPLMLVYGISVTSFALSSIAFIFGKPWNHMWWLAHAVFAGGFFM
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LSFGVVQALMTTRSFATVYSQQDLMARLAESMARTEGVLQELKRTNQKLEHLATTDPLTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFKTINDNYGHQVGDVVLRNFVRQCLA
CHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEECCCCCCHHHHHHHHHHHHHHHHH
AIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRTTIANASFGIDGKHTPVTVSIGVS
HHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECHH
QYGRDGDTVDEILSAADKLLYRAKNEGRNRVVAS
HCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]