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The map label for this gene is degU [H]

Identifier: 53718880

GI number: 53718880

Start: 1428898

End: 1429806

Strand: Reverse

Name: degU [H]

Synonym: BPSL1245

Alternate gene names: 53718880

Gene position: 1429806-1428898 (Counterclockwise)

Preceding gene: 53718881

Following gene: 53718879

Centisome position: 35.09

GC content: 64.47

Gene sequence:

>909_bases
ATGTCTTTGCCATTATTGAGGAGATGGCACTCGTCGTTTCTCGATCAATCGGATAAGCGGAGGCAAAACATGAGGTTTCT
GGTGCTCAATTCGGACGCAGAGCGTCGCGACGGCTTGAAAACCCTGCTGCGTCAAATCGACCGACATGCCGGCTACAACG
ACGCCAAGGACTGGCGGCAGGCACAACGGCTCATCAAGCAGCAGAGCTTCGACTTGATCGTGGTCGACTGGCAGGACATC
AAGCGCCTCGGAGATCTGCACGCGCTTTGCCAAGCTTGCGCGCCCACGCCCGTCGCGGCGCTCGTCGACGACGCATCGCC
CGTGCATGCGCAAGCGCTCTTCGAAGCCGGTGTGCTTGGCGTCATTTCACGCACGACGCGCCCGCACCTCATCGTTCGCG
CACTCGAAATGGTGTTGCTCGGCGGGCACTACGTGCCGCCGAGCGCGCTCAACCTCACCGAGCCGGCGGCGCGCGCGAGG
GACGGCCGCGTCGAAGCGATTGTGAGCCAGTTGCCGCGCAGGAAGCGCTCGCCGTGCAGTTTGCTGTCGCCGCGCCAGGC
GCAGATCATGCGGTTCGTTCACATGGGCAGCACCAACAAGATGATCGCGCGCACGCTCGGCATCAGCGAAGGCACGGTCA
AGATCCATCTGGCCAGCATCTTCCAGCAGTTGGGCGCGACAAATCGCGCCGCCGCGGTCGCGATCTACAACGGCTGGCTG
CCGCCGCACCTCGAAGTGCTGCTCTCCGCACGCGAGACCTCGCCGAAACCCGTACACGGTGCGGCCGGCCCCGTGCCGCT
GCGCCCGGCGAAATCGCGGCATCCGTACCCGCTCGCCGCCGAAAACGAATCGTCTGCCCAGCCGCTCATCGCGGCTGAAC
CGCGCACGCCGTTCAAGGCGAACGAATAG

Upstream 100 bases:

>100_bases
GCACCGCCGAAGGCCGCCTCGAGGTTCCGCTCGACGCGGCCTTCGCGTTTTGGTTTGTCTGAATTTTTCTTATGACTTTC
AGCTAGGCCGACATTTTGTA

Downstream 100 bases:

>100_bases
CCGGTAAAACCCGCGTAGAGGGTGAATCCATTCCCATCTTTTGTATTCAACGAGTAATATAAAAACATGGGTTTCCTCTA
CACGCCGCTTCCGTTCTGGA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MSLPLLRRWHSSFLDQSDKRRQNMRFLVLNSDAERRDGLKTLLRQIDRHAGYNDAKDWRQAQRLIKQQSFDLIVVDWQDI
KRLGDLHALCQACAPTPVAALVDDASPVHAQALFEAGVLGVISRTTRPHLIVRALEMVLLGGHYVPPSALNLTEPAARAR
DGRVEAIVSQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVAIYNGWL
PPHLEVLLSARETSPKPVHGAAGPVPLRPAKSRHPYPLAAENESSAQPLIAAEPRTPFKANE

Sequences:

>Translated_302_residues
MSLPLLRRWHSSFLDQSDKRRQNMRFLVLNSDAERRDGLKTLLRQIDRHAGYNDAKDWRQAQRLIKQQSFDLIVVDWQDI
KRLGDLHALCQACAPTPVAALVDDASPVHAQALFEAGVLGVISRTTRPHLIVRALEMVLLGGHYVPPSALNLTEPAARAR
DGRVEAIVSQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVAIYNGWL
PPHLEVLLSARETSPKPVHGAAGPVPLRPAKSRHPYPLAAENESSAQPLIAAEPRTPFKANE
>Mature_301_residues
SLPLLRRWHSSFLDQSDKRRQNMRFLVLNSDAERRDGLKTLLRQIDRHAGYNDAKDWRQAQRLIKQQSFDLIVVDWQDIK
RLGDLHALCQACAPTPVAALVDDASPVHAQALFEAGVLGVISRTTRPHLIVRALEMVLLGGHYVPPSALNLTEPAARARD
GRVEAIVSQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVAIYNGWLP
PHLEVLLSARETSPKPVHGAAGPVPLRPAKSRHPYPLAAENESSAQPLIAAEPRTPFKANE

Specific function: Regulating factor for the production of extracellular proteases. The N-terminal region acts as an inhibitor, whereas the C-terminal region carries enhancing activity [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 33430; Mature: 33299

Theoretical pI: Translated: 10.87; Mature: 10.87

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPLLRRWHSSFLDQSDKRRQNMRFLVLNSDAERRDGLKTLLRQIDRHAGYNDAKDWRQ
CCCHHHHHHHHHHHCCHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH
AQRLIKQQSFDLIVVDWQDIKRLGDLHALCQACAPTPVAALVDDASPVHAQALFEAGVLG
HHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHH
VISRTTRPHLIVRALEMVLLGGHYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCS
HHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCC
LLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVAIYNGWL
CCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEHHHHHHHHHCCCCCCEEEEEECCCC
PPHLEVLLSARETSPKPVHGAAGPVPLRPAKSRHPYPLAAENESSAQPLIAAEPRTPFKA
CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
NE
CC
>Mature Secondary Structure 
SLPLLRRWHSSFLDQSDKRRQNMRFLVLNSDAERRDGLKTLLRQIDRHAGYNDAKDWRQ
CCHHHHHHHHHHHCCHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH
AQRLIKQQSFDLIVVDWQDIKRLGDLHALCQACAPTPVAALVDDASPVHAQALFEAGVLG
HHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHH
VISRTTRPHLIVRALEMVLLGGHYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCS
HHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCC
LLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVAIYNGWL
CCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEHHHHHHHHHCCCCCCEEEEEECCCC
PPHLEVLLSARETSPKPVHGAAGPVPLRPAKSRHPYPLAAENESSAQPLIAAEPRTPFKA
CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
NE
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7765823 [H]