| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
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The map label for this gene is 53718775
Identifier: 53718775
GI number: 53718775
Start: 1325660
End: 1326949
Strand: Reverse
Name: 53718775
Synonym: BPSL1140
Alternate gene names: NA
Gene position: 1326949-1325660 (Counterclockwise)
Preceding gene: 53718776
Following gene: 53718774
Centisome position: 32.57
GC content: 63.8
Gene sequence:
>1290_bases ATGCGGCTGCTTTCGTGGATACGAAAAGCCGCTCCGCCGGTTGCGGTCGGCGGCGGCAATTCGATTGCTGGCGTCGTGCG CGAGCCGTTCGCGGGCGCGTGGCAGGCTGGAATGGGCATTGATAGCCGTCACGATCTGCTCGCGTTCTCGGCCGTGTACG CGTGTGTGGATCGCATCGCGTCGGACATTTCGAAGCTCGGCATCCGGTACGTGAAGCAGATCGGCAATATCTGGCAGGAC GCCAGCGCGCCACGCTTCACGGGGCCGTTGCGCCGGCCGAACCCGTACCAAAATCGAATTCAGTTCGTGAAGGCGTGGCA GGTGTCGAAGCTGCTCGCCGGCAACACGTATGTCCTGCTCGTTCGCGACATGCTGCGCAACGTAACTGCGATGTACGTGC TCGATCCGGCGCGCGTGATTCCGCTCGTCGCGCCGAGCGGCGCCGTGTTCTATCAGGTCGCCGCCGATCCGCTTCGCGGC GTACCCGGGCAAGTCACGATTCCCGCGTCCGAGATCATCCATGATCGCGGTATCTGCCCGTGGCATCCGCTCATCGGCGT ATCGCCGATCGTCGCGGCAGCGGCTGCCGGCACGATGGGAAACCGTATCCAGCAAAACAGCCGGAAGTTCTTCGGCAATA TGTCGCGGCCCGGCGGCATCCTGTCCGCGCCCGGCAAGATCAGCGACGAAACCGCAAACCGGCTCAAGACGCATTGGGAA ACGAACTACGGCGGTGAGAATGCCGGCCGTTTGGCCGTCGTGGGCGACGGGCTGAAGTACGAAACCGTCATGATGACCGC GACCGATGCGCAGCTCGTCGAGCAGCTTCGGTGGGCTGTCGAGGATGTTGCGCGCTGCTACCACGTACCGCTCTACAAGA TCGGCGCGGACCCAACCGGCTCGAAAACGGCGGCCAACATCGGCGCGCTCGAACAGTCGTACTACACCGATTGCCTGCAA GCCCCGATCGAAGAGCTCGAACTCTGTCTCGATGACGGTTTCGAGGTGCCGGACGGACAGGGTTTCGACGTTGATGTGCG CGGGCTACTGCGCATGGACCCGGCCGCGCGTTACGACGCGCACTCGAAAGCCGTAGGCGGCGGCTGGATGGCCCCGAATG AGGCGCGCGCAGCGGAGAACATGCCGCCTGTGCCGGGCGGCGATACGCCGTATCTGCAACAGCAGAACTATTCGCTCGGC GCACTCGCGAAGCGCGACAAGCACCCGGCGCCAAGCAGCGCGACGTTGACCAGCACATCTGCATCGAAGGAGCCGACAAA TGGCAATTAA
Upstream 100 bases:
>100_bases AAGAACAGCACGTCGCCTTGCTACGCCTGCTCGACAAGATTCGCGATGCTGTGCCGAAGCGGTCGACGTACATGCGACGC GACATGCGGCCGGGGGATTG
Downstream 100 bases:
>100_bases GCAACTCGTCTCGTTCAATCGCGCACTCTCGCACCTGCGCGTCGAAGCGGGCGAGGATGACGACGCGATTAAGGATCTGA TCGACGCTGCCAGCGATATC
Product: putative phage-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 429; Mature: 429
Protein sequence:
>429_residues MRLLSWIRKAAPPVAVGGGNSIAGVVREPFAGAWQAGMGIDSRHDLLAFSAVYACVDRIASDISKLGIRYVKQIGNIWQD ASAPRFTGPLRRPNPYQNRIQFVKAWQVSKLLAGNTYVLLVRDMLRNVTAMYVLDPARVIPLVAPSGAVFYQVAADPLRG VPGQVTIPASEIIHDRGICPWHPLIGVSPIVAAAAAGTMGNRIQQNSRKFFGNMSRPGGILSAPGKISDETANRLKTHWE TNYGGENAGRLAVVGDGLKYETVMMTATDAQLVEQLRWAVEDVARCYHVPLYKIGADPTGSKTAANIGALEQSYYTDCLQ APIEELELCLDDGFEVPDGQGFDVDVRGLLRMDPAARYDAHSKAVGGGWMAPNEARAAENMPPVPGGDTPYLQQQNYSLG ALAKRDKHPAPSSATLTSTSASKEPTNGN
Sequences:
>Translated_429_residues MRLLSWIRKAAPPVAVGGGNSIAGVVREPFAGAWQAGMGIDSRHDLLAFSAVYACVDRIASDISKLGIRYVKQIGNIWQD ASAPRFTGPLRRPNPYQNRIQFVKAWQVSKLLAGNTYVLLVRDMLRNVTAMYVLDPARVIPLVAPSGAVFYQVAADPLRG VPGQVTIPASEIIHDRGICPWHPLIGVSPIVAAAAAGTMGNRIQQNSRKFFGNMSRPGGILSAPGKISDETANRLKTHWE TNYGGENAGRLAVVGDGLKYETVMMTATDAQLVEQLRWAVEDVARCYHVPLYKIGADPTGSKTAANIGALEQSYYTDCLQ APIEELELCLDDGFEVPDGQGFDVDVRGLLRMDPAARYDAHSKAVGGGWMAPNEARAAENMPPVPGGDTPYLQQQNYSLG ALAKRDKHPAPSSATLTSTSASKEPTNGN >Mature_429_residues MRLLSWIRKAAPPVAVGGGNSIAGVVREPFAGAWQAGMGIDSRHDLLAFSAVYACVDRIASDISKLGIRYVKQIGNIWQD ASAPRFTGPLRRPNPYQNRIQFVKAWQVSKLLAGNTYVLLVRDMLRNVTAMYVLDPARVIPLVAPSGAVFYQVAADPLRG VPGQVTIPASEIIHDRGICPWHPLIGVSPIVAAAAAGTMGNRIQQNSRKFFGNMSRPGGILSAPGKISDETANRLKTHWE TNYGGENAGRLAVVGDGLKYETVMMTATDAQLVEQLRWAVEDVARCYHVPLYKIGADPTGSKTAANIGALEQSYYTDCLQ APIEELELCLDDGFEVPDGQGFDVDVRGLLRMDPAARYDAHSKAVGGGWMAPNEARAAENMPPVPGGDTPYLQQQNYSLG ALAKRDKHPAPSSATLTSTSASKEPTNGN
Specific function: Unknown
COG id: COG4695
COG function: function code S; Phage-related protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phage portal family. HK97 subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006944 - InterPro: IPR006427 [H]
Pfam domain/function: PF04860 Phage_portal [H]
EC number: NA
Molecular weight: Translated: 46150; Mature: 46150
Theoretical pI: Translated: 8.19; Mature: 8.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLLSWIRKAAPPVAVGGGNSIAGVVREPFAGAWQAGMGIDSRHDLLAFSAVYACVDRIA CHHHHHHHHCCCCEEECCCCCHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHH SDISKLGIRYVKQIGNIWQDASAPRFTGPLRRPNPYQNRIQFVKAWQVSKLLAGNTYVLL HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEH VRDMLRNVTAMYVLDPARVIPLVAPSGAVFYQVAADPLRGVPGQVTIPASEIIHDRGICP HHHHHHCCCEEEEECHHHEEEEECCCCCEEEEEECCHHCCCCCEEEECHHHHHHHCCCCC WHPLIGVSPIVAAAAAGTMGNRIQQNSRKFFGNMSRPGGILSAPGKISDETANRLKTHWE CCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHCC TNYGGENAGRLAVVGDGLKYETVMMTATDAQLVEQLRWAVEDVARCYHVPLYKIGADPTG CCCCCCCCCEEEEEECCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC SKTAANIGALEQSYYTDCLQAPIEELELCLDDGFEVPDGQGFDVDVRGLLRMDPAARYDA CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHEECCCHHHCCC HSKAVGGGWMAPNEARAAENMPPVPGGDTPYLQQQNYSLGALAKRDKHPAPSSATLTSTS CCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCEECCCCCHHHHHHCCCCCCCCCCEEECCC ASKEPTNGN CCCCCCCCC >Mature Secondary Structure MRLLSWIRKAAPPVAVGGGNSIAGVVREPFAGAWQAGMGIDSRHDLLAFSAVYACVDRIA CHHHHHHHHCCCCEEECCCCCHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHH SDISKLGIRYVKQIGNIWQDASAPRFTGPLRRPNPYQNRIQFVKAWQVSKLLAGNTYVLL HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEH VRDMLRNVTAMYVLDPARVIPLVAPSGAVFYQVAADPLRGVPGQVTIPASEIIHDRGICP HHHHHHCCCEEEEECHHHEEEEECCCCCEEEEEECCHHCCCCCEEEECHHHHHHHCCCCC WHPLIGVSPIVAAAAAGTMGNRIQQNSRKFFGNMSRPGGILSAPGKISDETANRLKTHWE CCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHCC TNYGGENAGRLAVVGDGLKYETVMMTATDAQLVEQLRWAVEDVARCYHVPLYKIGADPTG CCCCCCCCCEEEEEECCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC SKTAANIGALEQSYYTDCLQAPIEELELCLDDGFEVPDGQGFDVDVRGLLRMDPAARYDA CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHEECCCHHHCCC HSKAVGGGWMAPNEARAAENMPPVPGGDTPYLQQQNYSLGALAKRDKHPAPSSATLTSTS CCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCEECCCCCHHHHHHCCCCCCCCCCEEECCC ASKEPTNGN CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA