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The map label for this gene is yciR [C]

Identifier: 53718716

GI number: 53718716

Start: 1249558

End: 1251918

Strand: Reverse

Name: yciR [C]

Synonym: BPSL1080

Alternate gene names: 53718716

Gene position: 1251918-1249558 (Counterclockwise)

Preceding gene: 53718717

Following gene: 53718715

Centisome position: 30.73

GC content: 66.75

Gene sequence:

>2361_bases
ATGAGTTCGTCTCGGTCACACGCCGCCCGCGCCGCGCGGCCGGTGCGCGCGACACGCAAGTCGCGCCGCCGCCGCGCGCT
GTTCGCGATTCCGCTCCTCGGCACGCTGGCGCTCGCGCTGCTGTGGGTGGCCATCATCGCGCGCCTGTCCGTCGAGAAGG
ACAGCGCGTTCCGCGATGCGGGCGCGTCGGCCGCGATCCTGTCGACGGCGCTCGAGCAGCACACGGTCAAGGCGATCCAT
CAGGTCGACCAGATCACCCGCTTCGTCAAATACGAATTCGAGAAGTCGCCCACCCGCTTCAACCTTGCGAGCACGGTGGA
GAAAGGCGTGGTGCCGAGCGACACGCTGATCCAGGTGTCCATCCTCGATGCGCGCGGCCGGCTCGTCGCGAACACGGCCG
AGGCGCATCCGAAGCCGATCGACCTGTCCGACCGCGAGCACTTCAAGGTGCACATGCAGCGCAACGACGACGATCTCTAC
ATCAGCAAGCCGGTGTTCGGCCGCGTGTCGCGCCACTGGACCCTGCAGATGACGCGGCGCCTGAACCATCCGGACGGCTC
GTTCGCCGGCGTGGTCGTCGTGTCCGAGGATCCGGCCTACTTCACGAACGACTTCTACAACAACGCGACGCTCGGCAAGG
ACGGCGTGATCGCGGTGATCTCGGATACGGGCGCCGTGCTCGCGCGCAGCACGGGCTCCACGCAGAAGACGCCCGGCACG
TTCTCGGCATCGGGCGTCTACCCGGTGTCGGAGCGCGCCTCGGGCACCTATGTCGATCCGATCGACGGCATCGTGCGCAT
CGTGTCGTATCGCCATCTCGACGGCTATCCGCTCGGCGTGATGGTGGGCCTGTCGCAGGCGGAAGAATTCGCCGACTACC
ACCACACGCGCAATGTCTATCTGCTGATGACGGGCTTCATCACGCTCGCGATGCTCGCGTTCTTCGGCGTCGCGACGGGC
CTGATCGGCAAGCTGCTCGGCCGCGAGCGCGAAATGACGCAGCTCGCCGAGTTCGATCTGCTGACGGGGCTCGCGAACCG
CTATGCGACGCTGCGCAGCCTGCGCAACGACGTCGCGCTGCCGTCGAATCTGTCGCGCCTCGCGATCCTGTTCATCGATC
TCGACAATTTCAAGACCGTCAACGACACGCTCGGCCACAACGCGGGCGACATCGTGCTGCAGATGACGGCCGCGCGCCTG
TCCGATGCGGTGGCGAACGAAGGCGCGCTCGCGCGCATCGGCGGCGACGAGTTCGTCGTCGTCGTGAAGGGCGAGAACGT
CGAGCGGCGCGCCGAGCGGCTCGCGGAGGCGATCGTGCGAATGTTCGCCGAGCCGTTCGACGTGCGCGGCAGCTCGTTCG
TACTGCACGCGAGCATCGGCATCGCGCTGCATTCGGTGGAGAACGAAAGCGAGATCGACTTGCTGAAGAAGGCCGATCTC
GCGATGTACAGCGCCAAGGACGCCGGCAAGAACTGCTACCAGTTCTATGCGCCGCACTTGTCGCACCGCGCCGATCACCT
GATGCGCTGGGAGCAGCAGTTGCGCGTCGCGCTGTCGGACGGGCAACTGTTCCTCGCCTACCAGCCGAAGATCGATCTCA
CGTACCGCTGCATCACCGGCTTCGAGGCGCTCGTGCGCTGGGACCATCCGGAGCACGGCGTGATCTCCGCGAACGAATTC
ATTTCGATCGCCGAATCGACCGGGCTCATCGTGCCGATCGGCGACTTCGTGATCCGCACCGCGTGCGAGCAGCTCGCGCG
CTGGCGCAACGAGGGCCACGACAAGCTCACGCTCGCCGTCAATATCTCGCCCGTGCAGTTCTGGCGCGGCGACCTGATCG
ACACGATCTCGCGCGCGCTCGCCGAGACCGGAATCGAGGCGCGCCGCCTCGAGCTCGAGATCACCGAGACCGCGATGATG
GAATACCCTGAGCTCGTATCGGAGAAGATCGTCGCGCTGAAAAGGCTCGGGATCCGCGTCGCGCTCGACGATTTCGGCAC
CGGCTATTCGTCGCTGTCCTACCTGCACCGCTTCGCGGTCGACACCCTGAAGGTCGACCGCTCGTTCATCCAGGCGATTC
CGGCCGACCGCAGCGTGTGTGTGATGGTGTCGTCGATCGTGCACCTCGCGCGCTCGCTCGGGCTCACGGTCGTCGTCGAG
GGGACGGAGACGGAGGAGCAGATCGCGTGGCTCGCCGCGCTCGGGCGCATCGAGGCGCAAGGCTTCCTGTTCTCGCGGCC
GGTGCCCTCCGACGGCATTGCGGCCCTGCTCGCGCGCTTCGGCGTCTGCGGCGGCGACAGCGCGCGCGCGGCGGGCCGCG
ACATCGCGAACGCCGCTAAACAGTCGTTCGGCAGCGACTAA

Upstream 100 bases:

>100_bases
CATTCAGTAATATCGGGCCTCGTCTATTGTCTTCATTAATGGCCCGTTTACTCGGTTATCCTGTCGGATCGCCCATGCGC
GCAAGGACACCTTTCGTCCG

Downstream 100 bases:

>100_bases
ACGGCGCACCCCGCTGCGCCGCGCCGCGTACTCGTTTTTGCTCATACAACGAACGGTTTTCAGCGTGCACAATGAAACGT
GCGACGCACGCGTGGCCGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 786; Mature: 785

Protein sequence:

>786_residues
MSSSRSHAARAARPVRATRKSRRRRALFAIPLLGTLALALLWVAIIARLSVEKDSAFRDAGASAAILSTALEQHTVKAIH
QVDQITRFVKYEFEKSPTRFNLASTVEKGVVPSDTLIQVSILDARGRLVANTAEAHPKPIDLSDREHFKVHMQRNDDDLY
ISKPVFGRVSRHWTLQMTRRLNHPDGSFAGVVVVSEDPAYFTNDFYNNATLGKDGVIAVISDTGAVLARSTGSTQKTPGT
FSASGVYPVSERASGTYVDPIDGIVRIVSYRHLDGYPLGVMVGLSQAEEFADYHHTRNVYLLMTGFITLAMLAFFGVATG
LIGKLLGREREMTQLAEFDLLTGLANRYATLRSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARL
SDAVANEGALARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPFDVRGSSFVLHASIGIALHSVENESEIDLLKKADL
AMYSAKDAGKNCYQFYAPHLSHRADHLMRWEQQLRVALSDGQLFLAYQPKIDLTYRCITGFEALVRWDHPEHGVISANEF
ISIAESTGLIVPIGDFVIRTACEQLARWRNEGHDKLTLAVNISPVQFWRGDLIDTISRALAETGIEARRLELEITETAMM
EYPELVSEKIVALKRLGIRVALDDFGTGYSSLSYLHRFAVDTLKVDRSFIQAIPADRSVCVMVSSIVHLARSLGLTVVVE
GTETEEQIAWLAALGRIEAQGFLFSRPVPSDGIAALLARFGVCGGDSARAAGRDIANAAKQSFGSD

Sequences:

>Translated_786_residues
MSSSRSHAARAARPVRATRKSRRRRALFAIPLLGTLALALLWVAIIARLSVEKDSAFRDAGASAAILSTALEQHTVKAIH
QVDQITRFVKYEFEKSPTRFNLASTVEKGVVPSDTLIQVSILDARGRLVANTAEAHPKPIDLSDREHFKVHMQRNDDDLY
ISKPVFGRVSRHWTLQMTRRLNHPDGSFAGVVVVSEDPAYFTNDFYNNATLGKDGVIAVISDTGAVLARSTGSTQKTPGT
FSASGVYPVSERASGTYVDPIDGIVRIVSYRHLDGYPLGVMVGLSQAEEFADYHHTRNVYLLMTGFITLAMLAFFGVATG
LIGKLLGREREMTQLAEFDLLTGLANRYATLRSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARL
SDAVANEGALARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPFDVRGSSFVLHASIGIALHSVENESEIDLLKKADL
AMYSAKDAGKNCYQFYAPHLSHRADHLMRWEQQLRVALSDGQLFLAYQPKIDLTYRCITGFEALVRWDHPEHGVISANEF
ISIAESTGLIVPIGDFVIRTACEQLARWRNEGHDKLTLAVNISPVQFWRGDLIDTISRALAETGIEARRLELEITETAMM
EYPELVSEKIVALKRLGIRVALDDFGTGYSSLSYLHRFAVDTLKVDRSFIQAIPADRSVCVMVSSIVHLARSLGLTVVVE
GTETEEQIAWLAALGRIEAQGFLFSRPVPSDGIAALLARFGVCGGDSARAAGRDIANAAKQSFGSD
>Mature_785_residues
SSSRSHAARAARPVRATRKSRRRRALFAIPLLGTLALALLWVAIIARLSVEKDSAFRDAGASAAILSTALEQHTVKAIHQ
VDQITRFVKYEFEKSPTRFNLASTVEKGVVPSDTLIQVSILDARGRLVANTAEAHPKPIDLSDREHFKVHMQRNDDDLYI
SKPVFGRVSRHWTLQMTRRLNHPDGSFAGVVVVSEDPAYFTNDFYNNATLGKDGVIAVISDTGAVLARSTGSTQKTPGTF
SASGVYPVSERASGTYVDPIDGIVRIVSYRHLDGYPLGVMVGLSQAEEFADYHHTRNVYLLMTGFITLAMLAFFGVATGL
IGKLLGREREMTQLAEFDLLTGLANRYATLRSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLS
DAVANEGALARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPFDVRGSSFVLHASIGIALHSVENESEIDLLKKADLA
MYSAKDAGKNCYQFYAPHLSHRADHLMRWEQQLRVALSDGQLFLAYQPKIDLTYRCITGFEALVRWDHPEHGVISANEFI
SIAESTGLIVPIGDFVIRTACEQLARWRNEGHDKLTLAVNISPVQFWRGDLIDTISRALAETGIEARRLELEITETAMME
YPELVSEKIVALKRLGIRVALDDFGTGYSSLSYLHRFAVDTLKVDRSFIQAIPADRSVCVMVSSIVHLARSLGLTVVVEG
TETEEQIAWLAALGRIEAQGFLFSRPVPSDGIAALLARFGVCGGDSARAAGRDIANAAKQSFGSD

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=428, Percent_Identity=36.9158878504673, Blast_Score=264, Evalue=2e-71,
Organism=Escherichia coli, GI87081921, Length=432, Percent_Identity=33.1018518518519, Blast_Score=231, Evalue=2e-61,
Organism=Escherichia coli, GI226510982, Length=385, Percent_Identity=30.3896103896104, Blast_Score=187, Evalue=3e-48,
Organism=Escherichia coli, GI1787055, Length=426, Percent_Identity=28.169014084507, Blast_Score=160, Evalue=4e-40,
Organism=Escherichia coli, GI1790496, Length=240, Percent_Identity=35.4166666666667, Blast_Score=152, Evalue=8e-38,
Organism=Escherichia coli, GI1788502, Length=252, Percent_Identity=33.7301587301587, Blast_Score=148, Evalue=2e-36,
Organism=Escherichia coli, GI1786507, Length=246, Percent_Identity=32.9268292682927, Blast_Score=136, Evalue=6e-33,
Organism=Escherichia coli, GI87081845, Length=238, Percent_Identity=32.3529411764706, Blast_Score=135, Evalue=9e-33,
Organism=Escherichia coli, GI87081743, Length=240, Percent_Identity=31.25, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI87081980, Length=252, Percent_Identity=32.1428571428571, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1788849, Length=245, Percent_Identity=32.6530612244898, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI1788381, Length=396, Percent_Identity=25.2525252525253, Blast_Score=92, Evalue=2e-19,
Organism=Escherichia coli, GI87082096, Length=238, Percent_Identity=29.4117647058824, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI1788956, Length=165, Percent_Identity=37.5757575757576, Blast_Score=89, Evalue=8e-19,
Organism=Escherichia coli, GI87081977, Length=201, Percent_Identity=34.8258706467662, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1786584, Length=196, Percent_Identity=31.1224489795918, Blast_Score=82, Evalue=2e-16,
Organism=Escherichia coli, GI87082007, Length=232, Percent_Identity=28.8793103448276, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI145693134, Length=166, Percent_Identity=34.3373493975904, Blast_Score=77, Evalue=6e-15,
Organism=Escherichia coli, GI1787802, Length=163, Percent_Identity=31.2883435582822, Blast_Score=76, Evalue=8e-15,
Organism=Escherichia coli, GI87081881, Length=171, Percent_Identity=36.8421052631579, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787816, Length=169, Percent_Identity=32.5443786982249, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787262, Length=191, Percent_Identity=25.6544502617801, Blast_Score=66, Evalue=9e-12,
Organism=Escherichia coli, GI1787410, Length=223, Percent_Identity=25.1121076233184, Blast_Score=66, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 86330; Mature: 86198

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSRSHAARAARPVRATRKSRRRRALFAIPLLGTLALALLWVAIIARLSVEKDSAFRDA
CCCCHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHC
GASAAILSTALEQHTVKAIHQVDQITRFVKYEFEKSPTRFNLASTVEKGVVPSDTLIQVS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHCCCCCCCEEEEE
ILDARGRLVANTAEAHPKPIDLSDREHFKVHMQRNDDDLYISKPVFGRVSRHWTLQMTRR
EECCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCHHHCCCCCEEEEEHHH
LNHPDGSFAGVVVVSEDPAYFTNDFYNNATLGKDGVIAVISDTGAVLARSTGSTQKTPGT
CCCCCCCEEEEEEECCCCCHHHCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCC
FSASGVYPVSERASGTYVDPIDGIVRIVSYRHLDGYPLGVMVGLSQAEEFADYHHTRNVY
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHEEEHHHHHHHHHHHHCCCEE
LLMTGFITLAMLAFFGVATGLIGKLLGREREMTQLAEFDLLTGLANRYATLRSLRNDVAL
EHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVANEGALARIGGDEFVV
CCCCCEEEEEEEECCCCCCHHHHHCCCCCCEEEEEHHHHHHHHHCCCCCEEEECCCEEEE
VVKGENVERRAERLAEAIVRMFAEPFDVRGSSFVLHASIGIALHSVENESEIDLLKKADL
EEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECEEEEECCCCCHHHHHHHHHH
AMYSAKDAGKNCYQFYAPHLSHRADHLMRWEQQLRVALSDGQLFLAYQPKIDLTYRCITG
HHEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCEEEHHHHH
FEALVRWDHPEHGVISANEFISIAESTGLIVPIGDFVIRTACEQLARWRNEGHDKLTLAV
HHHHHCCCCCCCCEEEHHHHHEECCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEE
NISPVQFWRGDLIDTISRALAETGIEARRLELEITETAMMEYPELVSEKIVALKRLGIRV
ECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEE
ALDDFGTGYSSLSYLHRFAVDTLKVDRSFIQAIPADRSVCVMVSSIVHLARSLGLTVVVE
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEEE
GTETEEQIAWLAALGRIEAQGFLFSRPVPSDGIAALLARFGVCGGDSARAAGRDIANAAK
CCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
QSFGSD
HHCCCC
>Mature Secondary Structure 
SSSRSHAARAARPVRATRKSRRRRALFAIPLLGTLALALLWVAIIARLSVEKDSAFRDA
CCCHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHC
GASAAILSTALEQHTVKAIHQVDQITRFVKYEFEKSPTRFNLASTVEKGVVPSDTLIQVS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHCCCCCCCEEEEE
ILDARGRLVANTAEAHPKPIDLSDREHFKVHMQRNDDDLYISKPVFGRVSRHWTLQMTRR
EECCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCHHHCCCCCEEEEEHHH
LNHPDGSFAGVVVVSEDPAYFTNDFYNNATLGKDGVIAVISDTGAVLARSTGSTQKTPGT
CCCCCCCEEEEEEECCCCCHHHCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCC
FSASGVYPVSERASGTYVDPIDGIVRIVSYRHLDGYPLGVMVGLSQAEEFADYHHTRNVY
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHEEEHHHHHHHHHHHHCCCEE
LLMTGFITLAMLAFFGVATGLIGKLLGREREMTQLAEFDLLTGLANRYATLRSLRNDVAL
EHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVANEGALARIGGDEFVV
CCCCCEEEEEEEECCCCCCHHHHHCCCCCCEEEEEHHHHHHHHHCCCCCEEEECCCEEEE
VVKGENVERRAERLAEAIVRMFAEPFDVRGSSFVLHASIGIALHSVENESEIDLLKKADL
EEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECEEEEECCCCCHHHHHHHHHH
AMYSAKDAGKNCYQFYAPHLSHRADHLMRWEQQLRVALSDGQLFLAYQPKIDLTYRCITG
HHEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCEEEHHHHH
FEALVRWDHPEHGVISANEFISIAESTGLIVPIGDFVIRTACEQLARWRNEGHDKLTLAV
HHHHHCCCCCCCCEEEHHHHHEECCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEE
NISPVQFWRGDLIDTISRALAETGIEARRLELEITETAMMEYPELVSEKIVALKRLGIRV
ECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEE
ALDDFGTGYSSLSYLHRFAVDTLKVDRSFIQAIPADRSVCVMVSSIVHLARSLGLTVVVE
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEEE
GTETEEQIAWLAALGRIEAQGFLFSRPVPSDGIAALLARFGVCGGDSARAAGRDIANAAK
CCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
QSFGSD
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]