| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
Click here to switch to the map view.
The map label for this gene is 53718683
Identifier: 53718683
GI number: 53718683
Start: 1212228
End: 1212734
Strand: Reverse
Name: 53718683
Synonym: BPSL1042
Alternate gene names: NA
Gene position: 1212734-1212228 (Counterclockwise)
Preceding gene: 53718684
Following gene: 53718682
Centisome position: 29.76
GC content: 73.57
Gene sequence:
>507_bases ATGAGCGTGCGCGTGCGCGCGGCGCTGCCGCTCGCGGCGGCGCTCGCGCTCGCCGCGGCCGCGCTCGGCCTCTCCGGCTG CGGCTCGGTCGGCGCGGCAAGCGGCGCGCTCGCGGGCGCGGCGACGGGCCTCGTCACCGCGAATCCCGCCGTCGGCGTGG GCGTCGGCATCGCGGTGCAGGCCGCGACCGACGAAGCCGTCAACCGGACGATGAAGCAGCTCCACAAGAATCAGCAGGAC GCGATCGCGCAGGCGGCGGGCGGCCTCGCCGTCGGCGAAACGCGCGCATGGCAGGTGAAGAACCGGGTGCCGCTCGAGAA CGGCGAAGGCGAGGTGCGCGTGACGCGCGCGTTCCAGACGCCGCTCGCGCTTTGCAAGGAATTCGCGTTTTCGGTGAAGG ACGGCTCCCGCGCCGACTGGTATCTCGCCAACGCGTGCCAGGATGCGCACGGCTGGCAATGGGCGTCGGCCGAGCCGGCC GTCGAGCGCTGGGGCAATCTGCAGTGA
Upstream 100 bases:
>100_bases CCGCTCAATCGGGCTTCTACGTCGCGACGATCTGCCGGGACGGCCCCGCGTGGAAGTGGGCGTCGGCCGAACCCGCCACC GGCCGGTGGGGAGCGCTGCA
Downstream 100 bases:
>100_bases CGCGGGCGCGGCGAGCGGCGGCGATCACGGCCGTCTGAAAGCCCGAGAAGGACGCGTTGCGCACGCGGGCGGAGCGCACG ACGAAGCACACGGGCGTCGA
Product: putative lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 168; Mature: 167
Protein sequence:
>168_residues MSVRVRAALPLAAALALAAAALGLSGCGSVGAASGALAGAATGLVTANPAVGVGVGIAVQAATDEAVNRTMKQLHKNQQD AIAQAAGGLAVGETRAWQVKNRVPLENGEGEVRVTRAFQTPLALCKEFAFSVKDGSRADWYLANACQDAHGWQWASAEPA VERWGNLQ
Sequences:
>Translated_168_residues MSVRVRAALPLAAALALAAAALGLSGCGSVGAASGALAGAATGLVTANPAVGVGVGIAVQAATDEAVNRTMKQLHKNQQD AIAQAAGGLAVGETRAWQVKNRVPLENGEGEVRVTRAFQTPLALCKEFAFSVKDGSRADWYLANACQDAHGWQWASAEPA VERWGNLQ >Mature_167_residues SVRVRAALPLAAALALAAAALGLSGCGSVGAASGALAGAATGLVTANPAVGVGVGIAVQAATDEAVNRTMKQLHKNQQDA IAQAAGGLAVGETRAWQVKNRVPLENGEGEVRVTRAFQTPLALCKEFAFSVKDGSRADWYLANACQDAHGWQWASAEPAV ERWGNLQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17176; Mature: 17044
Theoretical pI: Translated: 8.07; Mature: 8.07
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVRVRAALPLAAALALAAAALGLSGCGSVGAASGALAGAATGLVTANPAVGVGVGIAVQ CCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCEEECCCCCCCCCCEEEE AATDEAVNRTMKQLHKNQQDAIAQAAGGLAVGETRAWQVKNRVPLENGEGEVRVTRAFQT ECCHHHHHHHHHHHHCCHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCCCEEEEEHHHH PLALCKEFAFSVKDGSRADWYLANACQDAHGWQWASAEPAVERWGNLQ HHHHHHHHHHHCCCCCCCCEEHHHHHCCCCCCCCCCCCHHHHHCCCCC >Mature Secondary Structure SVRVRAALPLAAALALAAAALGLSGCGSVGAASGALAGAATGLVTANPAVGVGVGIAVQ CEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCEEECCCCCCCCCCEEEE AATDEAVNRTMKQLHKNQQDAIAQAAGGLAVGETRAWQVKNRVPLENGEGEVRVTRAFQT ECCHHHHHHHHHHHHCCHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCCCEEEEEHHHH PLALCKEFAFSVKDGSRADWYLANACQDAHGWQWASAEPAVERWGNLQ HHHHHHHHHHHCCCCCCCCEEHHHHHCCCCCCCCCCCCHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA