| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
Click here to switch to the map view.
The map label for this gene is 53718650
Identifier: 53718650
GI number: 53718650
Start: 1174516
End: 1175226
Strand: Reverse
Name: 53718650
Synonym: BPSL1008
Alternate gene names: NA
Gene position: 1175226-1174516 (Counterclockwise)
Preceding gene: 53718651
Following gene: 53718649
Centisome position: 28.84
GC content: 73.14
Gene sequence:
>711_bases GTGACGACGTCCGCTCACTGCTGGCTGGCCGCGCTCACCCTCGCCGGCGCCGTCGCGCCCGCGAGCGGCGCGACGCTGCA GATTTCGCCCGTCACTGTCGAGATGGCCGCCGACAACCCGGCGGCGGGCGTCACGCTGAGCAACCCCGGCGCGCGGCCGG TCTACGGGCAGGTACGCACGTTCCGCTGGACTCAGGAACAGGGCGACGACATGCTCGCGCCCGCGCCGGAGCTGGTCGCG AGCCCGCCGCTCGTGCAGATCGGCGGGCAAGGCGAGCAGCTCGTGCGGCTCGTGCGCGTCGCGCACGACAAGCCGCGCCG CGAGGAAAGCTATCGCGTGCTGATCGACGAGCTGCCGACGCCCGATGCGCCCGTCGTCAACGGCATCGCGATCCGGCTGC GCTACTCGATCCCCGTGTTCGTCGTGCCCGACGTCGCGCTCGGCCCGCCGAAGCTCACCTGGCGCATCGTGCACGGCGCG ACCGGCTGGTTGCTGCGCGTGACGAACGACGGCGAGCGGCATGCGCAGCTCGCGTCGGTGCGGCTCGTCGACGACGCCGG CAAGGCCTACGAGATCGCGCCCGGCCTGCTCGGCTATGCGCTCGCCGGCGGCATGCGGCAATGGCCGCTGCGCATCGACG CGGCGCGCATCCGCAAGGTGCGCGCGGCCATCAACACCCGACCTGTGGAGGCGGACGTGAGCCCGCCTTGA
Upstream 100 bases:
>100_bases CAGACGCTCAGCGTATACGGCCAGGTGCCCGCGCAAACGACGCCGAAGCCCGATACCTACGAGTCGACCGTCACCGCGAC CATCACCTTCTGAGGCGTCC
Downstream 100 bases:
>100_bases CGCCACACTCCGAACGCTCTTCCCAACCACTCGCTCGAACGTGCCGACAGTCCGCCTCGCGCACCTCTCGACGGACCTTG GGCGACATCGACGGTTCGTC
Product: putative exported fimbriae-related chaperone
Products: NA
Alternate protein names: Type 1 Pili Usher Pathway Chaperone CsuC; Fimbrial Chaperone; P Pilus Assembly Protein Chaperone PapD-Like Protein; CsuC Protein; Pili Assembly Chaperone Transmembrane Protein; P Pilus Assembly Protein Chaperone PapD-Like; Chaperone Protein; Fimbrial Chaperone Protein; Chaperone Protein EcpD; Pilus Assembly Protein Chaperone PapD; P Pilus Assembly Protein Chaperone PapD; Exported Fimbriae-Related Chaperone; Pilus Assembly Protein; CsuC Protein Fimbrial Chaperone Proteins; Putataive Fimbrial Chaperone Protein; Type I Pili; Fimbrial Assembly Chaperone; Pili Assembly Chaperone Transmembrane Protein Papd-Like; PilP Assembly Chaperone Transmembrane Protein; Fimbriae-Assembly Chaperone; Chaperone Protein PmfD; Fimbriae Chaperone; Chaperone Protein MrkB; Type 1 Pili Usher Pathway Chaperone; Type I Pilus Usher Pathway Chaperone CsuC; Pili Assembly Chaperone N-Terminal; Pilus Assembly Chaperone; Pili Assembly Chaperone Protein
Number of amino acids: Translated: 236; Mature: 235
Protein sequence:
>236_residues MTTSAHCWLAALTLAGAVAPASGATLQISPVTVEMAADNPAAGVTLSNPGARPVYGQVRTFRWTQEQGDDMLAPAPELVA SPPLVQIGGQGEQLVRLVRVAHDKPRREESYRVLIDELPTPDAPVVNGIAIRLRYSIPVFVVPDVALGPPKLTWRIVHGA TGWLLRVTNDGERHAQLASVRLVDDAGKAYEIAPGLLGYALAGGMRQWPLRIDAARIRKVRAAINTRPVEADVSPP
Sequences:
>Translated_236_residues MTTSAHCWLAALTLAGAVAPASGATLQISPVTVEMAADNPAAGVTLSNPGARPVYGQVRTFRWTQEQGDDMLAPAPELVA SPPLVQIGGQGEQLVRLVRVAHDKPRREESYRVLIDELPTPDAPVVNGIAIRLRYSIPVFVVPDVALGPPKLTWRIVHGA TGWLLRVTNDGERHAQLASVRLVDDAGKAYEIAPGLLGYALAGGMRQWPLRIDAARIRKVRAAINTRPVEADVSPP >Mature_235_residues TTSAHCWLAALTLAGAVAPASGATLQISPVTVEMAADNPAAGVTLSNPGARPVYGQVRTFRWTQEQGDDMLAPAPELVAS PPLVQIGGQGEQLVRLVRVAHDKPRREESYRVLIDELPTPDAPVVNGIAIRLRYSIPVFVVPDVALGPPKLTWRIVHGAT GWLLRVTNDGERHAQLASVRLVDDAGKAYEIAPGLLGYALAGGMRQWPLRIDAARIRKVRAAINTRPVEADVSPP
Specific function: Unknown
COG id: COG3121
COG function: function code NU; P pilus assembly protein, chaperone PapD
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25258; Mature: 25127
Theoretical pI: Translated: 9.05; Mature: 9.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTSAHCWLAALTLAGAVAPASGATLQISPVTVEMAADNPAAGVTLSNPGARPVYGQVRT CCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCCEEECCCCCCCCCCCEEE FRWTQEQGDDMLAPAPELVASPPLVQIGGQGEQLVRLVRVAHDKPRREESYRVLIDELPT EEECHHCCCCCCCCCHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCC PDAPVVNGIAIRLRYSIPVFVVPDVALGPPKLTWRIVHGATGWLLRVTNDGERHAQLASV CCCCCCCCEEEEEEECCCEEEECCCCCCCCCEEEEEEECCCEEEEEEECCCHHHHEEEEE RLVDDAGKAYEIAPGLLGYALAGGMRQWPLRIDAARIRKVRAAINTRPVEADVSPP EEECCCCCEEEECCHHHHHHHHCCCEECCEEECHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure TTSAHCWLAALTLAGAVAPASGATLQISPVTVEMAADNPAAGVTLSNPGARPVYGQVRT CCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCCEEECCCCCCCCCCCEEE FRWTQEQGDDMLAPAPELVASPPLVQIGGQGEQLVRLVRVAHDKPRREESYRVLIDELPT EEECHHCCCCCCCCCHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCC PDAPVVNGIAIRLRYSIPVFVVPDVALGPPKLTWRIVHGATGWLLRVTNDGERHAQLASV CCCCCCCCEEEEEEECCCEEEECCCCCCCCCEEEEEEECCCEEEEEEECCCHHHHEEEEE RLVDDAGKAYEIAPGLLGYALAGGMRQWPLRIDAARIRKVRAAINTRPVEADVSPP EEECCCCCEEEECCHHHHHHHHCCCEECCEEECHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA