| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
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The map label for this gene is metG [H]
Identifier: 53718640
GI number: 53718640
Start: 1159815
End: 1161992
Strand: Reverse
Name: metG [H]
Synonym: BPSL0998
Alternate gene names: 53718640
Gene position: 1161992-1159815 (Counterclockwise)
Preceding gene: 53718641
Following gene: 53718635
Centisome position: 28.52
GC content: 67.08
Gene sequence:
>2178_bases ATGTCCGCATCCGACCTCACTTCCGTGCAGGCCGGCGCGCCGCAAGGCCGCCGCCAGATCCTCGTCACGTCCGCGCTGCC CTATGCGAACGGGCAGATTCACATCGGCCATCTGGTCGAGTACATCCAGACCGACATCTGGGTGCGGACGATGCGAATGC ACGGTCACGAGATCTACTACATCGGCGCGGACGACACGCACGGCACGCCCGTCATGCTGCGCGCCGAGCAGGAAGGCGTG AGCCCGAAGCAGTTGATCGAGCGCGTGTGGCGCGAGCACAAGCGCGATTTCGACAGCTTCGGCGTGTCGTTCGACAACTT CTACACGACCGATTCGGACGAGAACCGCGTGCTCAGCGAGACGATCTATCTCGCGCTGAAGGAGGCGGGCTTCATCGCCG AGCGCGAGATCGAGCAGGCGTACGACCCCGTCAGGCAAATGTTCCTGCCGGACCGCTTCATCAAGGGCGAATGCCCGAAG TGCCACGCGAAGGACCAGTACGGCGACAGCTGCGAGGTGTGCGGCACGACGTACCAGCCGACGGACCTCATCCATCCGTA CTCGGTCGTCTCGGGCGCCGCGCCCGTGCGCAAGACGTCGACGCACTACTTCTTCCGCCTGTCCGATCCGCGCTGCGAGG CGTTCCTGCGCGAATGGGTGAGCGGCCTCGCGCAGCCCGAGGCGACCAACAAGATGCGCGAATGGCTCGGCGAGGCGGGC GAGGCGAAGCTCGCCGACTGGGACATCTCGCGCGACGCGCCGTACTTCGGCTTCGAGATTCCCGGCGCGCCCGGCAAGTA TTTCTACGTATGGCTCGACGCGCCCGTCGGCTACTACGCGAGCTTCAAGAACCTGTGCCAGCGGCGCGGCCTCGATTTCG ACGCGTGGATCCGCAAGGATTCGACGACCGAGCAGTACCACTTCATCGGCAAGGACATCCTGTACTTCCATACGCTGTTC TGGCCCGCGATGCTCGAGTTCTCGGGCCACCGCACGCCGACCAACGTGTTCGCGCACGGCTTCCTGACGGTCGACGGCGC GAAGATGTCGAAATCGCGCGGCACGTTCATCACCGCGCAGAGCTACATCGACACGGGCCTGAACCCCGAATGGCTGCGCT ACTACTTCGCCGCGAAGCTGAACGCGACGATGGAAGACATCGACCTGAACCTCGAGGATTTCCAGGCGCGCGTCAATAGC GACCTCGTCGGCAAGTACGTGAACATCGCGAGCCGCGCGGCGGGCTTCCTGCTCAAGCGCTTCGACGGCCGCGTGCAGGC GAGCGCGATGAACCATCCGCTTCTCGCGACGCTGCGCGGCGCGATCCCGCAGATCGCCGCGCACTACGAGGCGCGCGAGT ACGGCCGCGCGCTGCGCCAGACGATGGAGCTCGCGGATGCGGTGAACGGCTACGTCGACTCCGCGAAGCCGTGGGAGCTC GCGAAGGATCCGGCGAACGCGGTCGCGCTGCATGAAACCTGCAGCGTGAGCCTCGAGGCGTTCCGCCTGCTGTCGCTCGC GCTCAAGCCGGTGCTGCCGCGCGTCGCGCAAGGCGTCGAGGCGTTCCTCGGCATCGCGCCGCTCACGTGGGCCGATGCGG GCATGCCGCTGTCGCCCGAGCAGCCGGTCCGCGCATACCAGCATCTGATGACCCGCGTCGATCCGAAGCAGATCGACGCG CTGCTCGCGGCGAACCGCGGCTCGCTGCAAGGCACGGCGGCGGCGGCCGAAGCCGGCGCGGCGAACGGCAACGGCGCCGG CTCGAAGAACGGCAAAGGCGCCAAGGCGGCGGCGCAGCCCGCGGCGAGCGCGGCGAATGCCGACGACGGCGCGTCGCCGA TCATCTCGATCGACGATTTCGCGAAGATCGACCTGCGCATCGCGAAGATCGTCGCGTGCCAGGCGGTCGAAGGCTCGGAC AAGCTGCTGCAGCTCACGCTCGACGTCGGCGAGGAGAGGACCCGCAACGTGTTCTCCGGCATCAAGTCCGCATACCGGCC CGAGCAGCTCGTCGGCAAGCTGACGGTGATGGTCGCGAACCTCGCGCCGCGCAAGATGAAGTTCGGCCTGTCCGAAGGGA TGGTGCTCGCCGCGTCGGCGGCCGACGAGAAGGCCGAGCCCGGCCTCTACATCCTCGAGCCGCACAGCGGCGCGAAGCCC GGCATGCGCGTGAAGTAA
Upstream 100 bases:
>100_bases GCGCGATTCCGCGCGGTCCGCCCGCAGGTCGGCGCGCGGCCGCCCTGCTAGAATCGCGGCTTCCCTACGATTTTCCGCAA GCAGTCCGTTCAGAGACCCT
Downstream 100 bases:
>100_bases GCGCGCATCGCCACGGCGACGCATCCGCAAGGGCCGCGCAAGCGGCCCTTGTCGTTCTTGCGCGTCAGGCTCTCGCGCGT GAGCGGCGCGGGGTCGTGTG
Product: methionyl-tRNA synthetase
Products: NA
Alternate protein names: Methionine--tRNA ligase; MetRS [H]
Number of amino acids: Translated: 725; Mature: 724
Protein sequence:
>725_residues MSASDLTSVQAGAPQGRRQILVTSALPYANGQIHIGHLVEYIQTDIWVRTMRMHGHEIYYIGADDTHGTPVMLRAEQEGV SPKQLIERVWREHKRDFDSFGVSFDNFYTTDSDENRVLSETIYLALKEAGFIAEREIEQAYDPVRQMFLPDRFIKGECPK CHAKDQYGDSCEVCGTTYQPTDLIHPYSVVSGAAPVRKTSTHYFFRLSDPRCEAFLREWVSGLAQPEATNKMREWLGEAG EAKLADWDISRDAPYFGFEIPGAPGKYFYVWLDAPVGYYASFKNLCQRRGLDFDAWIRKDSTTEQYHFIGKDILYFHTLF WPAMLEFSGHRTPTNVFAHGFLTVDGAKMSKSRGTFITAQSYIDTGLNPEWLRYYFAAKLNATMEDIDLNLEDFQARVNS DLVGKYVNIASRAAGFLLKRFDGRVQASAMNHPLLATLRGAIPQIAAHYEAREYGRALRQTMELADAVNGYVDSAKPWEL AKDPANAVALHETCSVSLEAFRLLSLALKPVLPRVAQGVEAFLGIAPLTWADAGMPLSPEQPVRAYQHLMTRVDPKQIDA LLAANRGSLQGTAAAAEAGAANGNGAGSKNGKGAKAAAQPAASAANADDGASPIISIDDFAKIDLRIAKIVACQAVEGSD KLLQLTLDVGEERTRNVFSGIKSAYRPEQLVGKLTVMVANLAPRKMKFGLSEGMVLAASAADEKAEPGLYILEPHSGAKP GMRVK
Sequences:
>Translated_725_residues MSASDLTSVQAGAPQGRRQILVTSALPYANGQIHIGHLVEYIQTDIWVRTMRMHGHEIYYIGADDTHGTPVMLRAEQEGV SPKQLIERVWREHKRDFDSFGVSFDNFYTTDSDENRVLSETIYLALKEAGFIAEREIEQAYDPVRQMFLPDRFIKGECPK CHAKDQYGDSCEVCGTTYQPTDLIHPYSVVSGAAPVRKTSTHYFFRLSDPRCEAFLREWVSGLAQPEATNKMREWLGEAG EAKLADWDISRDAPYFGFEIPGAPGKYFYVWLDAPVGYYASFKNLCQRRGLDFDAWIRKDSTTEQYHFIGKDILYFHTLF WPAMLEFSGHRTPTNVFAHGFLTVDGAKMSKSRGTFITAQSYIDTGLNPEWLRYYFAAKLNATMEDIDLNLEDFQARVNS DLVGKYVNIASRAAGFLLKRFDGRVQASAMNHPLLATLRGAIPQIAAHYEAREYGRALRQTMELADAVNGYVDSAKPWEL AKDPANAVALHETCSVSLEAFRLLSLALKPVLPRVAQGVEAFLGIAPLTWADAGMPLSPEQPVRAYQHLMTRVDPKQIDA LLAANRGSLQGTAAAAEAGAANGNGAGSKNGKGAKAAAQPAASAANADDGASPIISIDDFAKIDLRIAKIVACQAVEGSD KLLQLTLDVGEERTRNVFSGIKSAYRPEQLVGKLTVMVANLAPRKMKFGLSEGMVLAASAADEKAEPGLYILEPHSGAKP GMRVK >Mature_724_residues SASDLTSVQAGAPQGRRQILVTSALPYANGQIHIGHLVEYIQTDIWVRTMRMHGHEIYYIGADDTHGTPVMLRAEQEGVS PKQLIERVWREHKRDFDSFGVSFDNFYTTDSDENRVLSETIYLALKEAGFIAEREIEQAYDPVRQMFLPDRFIKGECPKC HAKDQYGDSCEVCGTTYQPTDLIHPYSVVSGAAPVRKTSTHYFFRLSDPRCEAFLREWVSGLAQPEATNKMREWLGEAGE AKLADWDISRDAPYFGFEIPGAPGKYFYVWLDAPVGYYASFKNLCQRRGLDFDAWIRKDSTTEQYHFIGKDILYFHTLFW PAMLEFSGHRTPTNVFAHGFLTVDGAKMSKSRGTFITAQSYIDTGLNPEWLRYYFAAKLNATMEDIDLNLEDFQARVNSD LVGKYVNIASRAAGFLLKRFDGRVQASAMNHPLLATLRGAIPQIAAHYEAREYGRALRQTMELADAVNGYVDSAKPWELA KDPANAVALHETCSVSLEAFRLLSLALKPVLPRVAQGVEAFLGIAPLTWADAGMPLSPEQPVRAYQHLMTRVDPKQIDAL LAANRGSLQGTAAAAEAGAANGNGAGSKNGKGAKAAAQPAASAANADDGASPIISIDDFAKIDLRIAKIVACQAVEGSDK LLQLTLDVGEERTRNVFSGIKSAYRPEQLVGKLTVMVANLAPRKMKFGLSEGMVLAASAADEKAEPGLYILEPHSGAKPG MRVK
Specific function: Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation [H]
COG id: COG0143
COG function: function code J; Methionyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Homo sapiens, GI14043022, Length=526, Percent_Identity=27.3764258555133, Blast_Score=208, Evalue=2e-53, Organism=Homo sapiens, GI24308436, Length=553, Percent_Identity=26.7631103074141, Blast_Score=160, Evalue=4e-39, Organism=Escherichia coli, GI1788432, Length=715, Percent_Identity=52.7272727272727, Blast_Score=748, Evalue=0.0, Organism=Caenorhabditis elegans, GI17540794, Length=693, Percent_Identity=26.8398268398268, Blast_Score=236, Evalue=3e-62, Organism=Caenorhabditis elegans, GI212645096, Length=548, Percent_Identity=22.992700729927, Blast_Score=123, Evalue=4e-28, Organism=Caenorhabditis elegans, GI71992781, Length=290, Percent_Identity=25.1724137931034, Blast_Score=94, Evalue=2e-19, Organism=Saccharomyces cerevisiae, GI6321704, Length=564, Percent_Identity=26.9503546099291, Blast_Score=221, Evalue=2e-58, Organism=Saccharomyces cerevisiae, GI6321610, Length=545, Percent_Identity=24.2201834862385, Blast_Score=117, Evalue=6e-27, Organism=Drosophila melanogaster, GI24655311, Length=544, Percent_Identity=28.6764705882353, Blast_Score=222, Evalue=8e-58, Organism=Drosophila melanogaster, GI21358483, Length=518, Percent_Identity=26.2548262548263, Blast_Score=136, Evalue=7e-32,
Paralogues:
None
Copy number: 871 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001412 - InterPro: IPR015413 - InterPro: IPR004495 - InterPro: IPR014758 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR014729 - InterPro: IPR002547 - InterPro: IPR009080 [H]
Pfam domain/function: PF09334 tRNA-synt_1g; PF01588 tRNA_bind [H]
EC number: =6.1.1.10 [H]
Molecular weight: Translated: 79914; Mature: 79783
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS50886 TRBD ; PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSASDLTSVQAGAPQGRRQILVTSALPYANGQIHIGHLVEYIQTDIWVRTMRMHGHEIYY CCCCCCCHHCCCCCCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCEEEE IGADDTHGTPVMLRAEQEGVSPKQLIERVWREHKRDFDSFGVSFDNFYTTDSDENRVLSE EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCHHHHH TIYLALKEAGFIAEREIEQAYDPVRQMFLPDRFIKGECPKCHAKDQYGDSCEVCGTTYQP HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCHHCCCCCCCC TDLIHPYSVVSGAAPVRKTSTHYFFRLSDPRCEAFLREWVSGLAQPEATNKMREWLGEAG CCCCCCHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC EAKLADWDISRDAPYFGFEIPGAPGKYFYVWLDAPVGYYASFKNLCQRRGLDFDAWIRKD CCEEECCCCCCCCCCCCEECCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHCCCC STTEQYHFIGKDILYFHTLFWPAMLEFSGHRTPTNVFAHGFLTVDGAKMSKSRGTFITAQ CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEEECCCCCCCCCCCEEEEH SYIDTGLNPEWLRYYFAAKLNATMEDIDLNLEDFQARVNSDLVGKYVNIASRAAGFLLKR HHHCCCCCHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH FDGRVQASAMNHPLLATLRGAIPQIAAHYEAREYGRALRQTMELADAVNGYVDSAKPWEL HCCCEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC AKDPANAVALHETCSVSLEAFRLLSLALKPVLPRVAQGVEAFLGIAPLTWADAGMPLSPE CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC QPVRAYQHLMTRVDPKQIDALLAANRGSLQGTAAAAEAGAANGNGAGSKNGKGAKAAAQP CHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHCC AASAANADDGASPIISIDDFAKIDLRIAKIVACQAVEGSDKLLQLTLDVGEERTRNVFSG CCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHH IKSAYRPEQLVGKLTVMVANLAPRKMKFGLSEGMVLAASAADEKAEPGLYILEPHSGAKP HHHHCCHHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEECCCCCCCCCCEEEECCCCCCCC GMRVK CCCCC >Mature Secondary Structure SASDLTSVQAGAPQGRRQILVTSALPYANGQIHIGHLVEYIQTDIWVRTMRMHGHEIYY CCCCCCHHCCCCCCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCEEEE IGADDTHGTPVMLRAEQEGVSPKQLIERVWREHKRDFDSFGVSFDNFYTTDSDENRVLSE EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCHHHHH TIYLALKEAGFIAEREIEQAYDPVRQMFLPDRFIKGECPKCHAKDQYGDSCEVCGTTYQP HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCHHCCCCCCCC TDLIHPYSVVSGAAPVRKTSTHYFFRLSDPRCEAFLREWVSGLAQPEATNKMREWLGEAG CCCCCCHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC EAKLADWDISRDAPYFGFEIPGAPGKYFYVWLDAPVGYYASFKNLCQRRGLDFDAWIRKD CCEEECCCCCCCCCCCCEECCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHCCCC STTEQYHFIGKDILYFHTLFWPAMLEFSGHRTPTNVFAHGFLTVDGAKMSKSRGTFITAQ CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEEECCCCCCCCCCCEEEEH SYIDTGLNPEWLRYYFAAKLNATMEDIDLNLEDFQARVNSDLVGKYVNIASRAAGFLLKR HHHCCCCCHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH FDGRVQASAMNHPLLATLRGAIPQIAAHYEAREYGRALRQTMELADAVNGYVDSAKPWEL HCCCEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC AKDPANAVALHETCSVSLEAFRLLSLALKPVLPRVAQGVEAFLGIAPLTWADAGMPLSPE CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC QPVRAYQHLMTRVDPKQIDALLAANRGSLQGTAAAAEAGAANGNGAGSKNGKGAKAAAQP CHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHCC AASAANADDGASPIISIDDFAKIDLRIAKIVACQAVEGSDKLLQLTLDVGEERTRNVFSG CCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHH IKSAYRPEQLVGKLTVMVANLAPRKMKFGLSEGMVLAASAADEKAEPGLYILEPHSGAKP HHHHCCHHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEECCCCCCCCCCEEEECCCCCCCC GMRVK CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA