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The map label for this gene is ybbN [H]

Identifier: 53718495

GI number: 53718495

Start: 995643

End: 996548

Strand: Reverse

Name: ybbN [H]

Synonym: BPSL0856

Alternate gene names: 53718495

Gene position: 996548-995643 (Counterclockwise)

Preceding gene: 53718496

Following gene: 161723209

Centisome position: 24.46

GC content: 69.21

Gene sequence:

>906_bases
TTGAAAAAGCGCCCGCGCTCCCCCATTGTGCATACATCCAACATCGACGAGGACGCCATGGACACCACGCTCGCCACTTT
CGAACGCGACGTCATCGAAGCATCGCTTGCCGCCCCCGTGCTGGTCGACTTCTGGGCGCCGTGGTGCGGCCCGTGCAAGA
CGCTCGGCCCGCTGCTCGAGAAGCTCGAGCAGGAGTACGAAGGCCGCTGGAAGCTCGTGAAGGTGAACGTCGACGAGAAT
CAGGAGCTCGCCGCGCACTTCCAGACGCGCAGCATTCCGCACGTGATCGCGTTCGCGGGCGGGCAGCCGGTCGACCAGTT
CGTCGGCGTGCTGCCCGAAGGGCAACTGCGCGCGTTCCTCGATCGCCTCGTGCCCGCGCCCGACGAGGCCGAGCGTTACG
CCGCGCAGACCGCGCTCGCCGAGGAGCGGATCGACGACGCGCTGTCGCACCTCGAAAACGCGCTCGCGCTGAACCCCGGC
TATGACGACGCGCGCCTCGATCTCGTCGAGCTGCTGCTCGCGCTGAACCGGATCGACGACGCGCGCGCCGAAGCCGCGCG
GCTGTCGCCGCAGACCACGGGCGGCGCCGACGCGCGCTACCAGGCGATCAAGACGCGCTTCGACGCGCTCGACGCAACGG
CCGACCTGCCGCCGACCGACGCGCTCGAAGCGCGCATCGCGAGCCATCCGGCCGATCTCGACGCGCGCTTCGATCTCGCG
CAGAGCCTGATCGCGCGCCGCGCATACGAAGGCGCGCTCGAACAGTTGCTGGAGATCGTCCTGCGCGACCGGACGTTCGG
CGACGACGTCGGCCGCAAGACGATGATTTCGGTGTTCGAGCTCGCGGCCGACCAGCCGGAGCTCGTGTCCGCGTGGCGGC
GCAAGCTGAGCGCGGCGCTGAACTGA

Upstream 100 bases:

>100_bases
GCGACACGATCGAGCGGGCGAAGCGCGCGTGGGCGGCGCAGCAGATGGGGACGGTACCCGGCGAAACCGAGTGGATTCCG
TTCCCGGAACACCGCGCGCA

Downstream 100 bases:

>100_bases
CGCGCCGGCACACGGACGACGACAGGCTTCGGCCGGAGCGGCCATGCGGCGGGCGCGCATATTGCGCGTGCGCCGCTTTT
TTCTTGCAGCGCGATGGCGC

Product: putative thioredoxin protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MKKRPRSPIVHTSNIDEDAMDTTLATFERDVIEASLAAPVLVDFWAPWCGPCKTLGPLLEKLEQEYEGRWKLVKVNVDEN
QELAAHFQTRSIPHVIAFAGGQPVDQFVGVLPEGQLRAFLDRLVPAPDEAERYAAQTALAEERIDDALSHLENALALNPG
YDDARLDLVELLLALNRIDDARAEAARLSPQTTGGADARYQAIKTRFDALDATADLPPTDALEARIASHPADLDARFDLA
QSLIARRAYEGALEQLLEIVLRDRTFGDDVGRKTMISVFELAADQPELVSAWRRKLSAALN

Sequences:

>Translated_301_residues
MKKRPRSPIVHTSNIDEDAMDTTLATFERDVIEASLAAPVLVDFWAPWCGPCKTLGPLLEKLEQEYEGRWKLVKVNVDEN
QELAAHFQTRSIPHVIAFAGGQPVDQFVGVLPEGQLRAFLDRLVPAPDEAERYAAQTALAEERIDDALSHLENALALNPG
YDDARLDLVELLLALNRIDDARAEAARLSPQTTGGADARYQAIKTRFDALDATADLPPTDALEARIASHPADLDARFDLA
QSLIARRAYEGALEQLLEIVLRDRTFGDDVGRKTMISVFELAADQPELVSAWRRKLSAALN
>Mature_301_residues
MKKRPRSPIVHTSNIDEDAMDTTLATFERDVIEASLAAPVLVDFWAPWCGPCKTLGPLLEKLEQEYEGRWKLVKVNVDEN
QELAAHFQTRSIPHVIAFAGGQPVDQFVGVLPEGQLRAFLDRLVPAPDEAERYAAQTALAEERIDDALSHLENALALNPG
YDDARLDLVELLLALNRIDDARAEAARLSPQTTGGADARYQAIKTRFDALDATADLPPTDALEARIASHPADLDARFDLA
QSLIARRAYEGALEQLLEIVLRDRTFGDDVGRKTMISVFELAADQPELVSAWRRKLSAALN

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI21361403, Length=87, Percent_Identity=45.9770114942529, Blast_Score=92, Evalue=7e-19,
Organism=Escherichia coli, GI87081747, Length=272, Percent_Identity=35.2941176470588, Blast_Score=141, Evalue=4e-35,
Organism=Escherichia coli, GI87082331, Length=96, Percent_Identity=42.7083333333333, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1788936, Length=83, Percent_Identity=43.3734939759036, Blast_Score=92, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI212646193, Length=100, Percent_Identity=42, Blast_Score=84, Evalue=7e-17,
Organism=Saccharomyces cerevisiae, GI6321648, Length=73, Percent_Identity=39.7260273972603, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28573567, Length=105, Percent_Identity=40.9523809523809, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24639826, Length=70, Percent_Identity=42.8571428571429, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24664269, Length=85, Percent_Identity=38.8235294117647, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24639068, Length=96, Percent_Identity=36.4583333333333, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI21358065, Length=82, Percent_Identity=40.2439024390244, Blast_Score=68, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 33259; Mature: 33259

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: PS00194 THIOREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRPRSPIVHTSNIDEDAMDTTLATFERDVIEASLAAPVLVDFWAPWCGPCKTLGPLLE
CCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
KLEQEYEGRWKLVKVNVDENQELAAHFQTRSIPHVIAFAGGQPVDQFVGVLPEGQLRAFL
HHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCHHHHHHH
DRLVPAPDEAERYAAQTALAEERIDDALSHLENALALNPGYDDARLDLVELLLALNRIDD
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
ARAEAARLSPQTTGGADARYQAIKTRFDALDATADLPPTDALEARIASHPADLDARFDLA
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHH
QSLIARRAYEGALEQLLEIVLRDRTFGDDVGRKTMISVFELAADQPELVSAWRRKLSAAL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
N
C
>Mature Secondary Structure
MKKRPRSPIVHTSNIDEDAMDTTLATFERDVIEASLAAPVLVDFWAPWCGPCKTLGPLLE
CCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
KLEQEYEGRWKLVKVNVDENQELAAHFQTRSIPHVIAFAGGQPVDQFVGVLPEGQLRAFL
HHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCHHHHHHH
DRLVPAPDEAERYAAQTALAEERIDDALSHLENALALNPGYDDARLDLVELLLALNRIDD
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
ARAEAARLSPQTTGGADARYQAIKTRFDALDATADLPPTDALEARIASHPADLDARFDLA
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHH
QSLIARRAYEGALEQLLEIVLRDRTFGDDVGRKTMISVFELAADQPELVSAWRRKLSAAL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
N
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]