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The map label for this gene is kdsD [H]

Identifier: 53718177

GI number: 53718177

Start: 589316

End: 590299

Strand: Reverse

Name: kdsD [H]

Synonym: BPSL0538

Alternate gene names: 53718177

Gene position: 590299-589316 (Counterclockwise)

Preceding gene: 53718183

Following gene: 53718176

Centisome position: 14.49

GC content: 69.82

Gene sequence:

>984_bases
ATGATAGCGAAAATCAATGATGATCGGGCGCTCGCGCTCGCCCGCGACGTGCTCGACATCGAGGCGAACGCCGTGCGCGC
GCTCGCCGAGCAGCTCGACGGCGAATTCGTCGCCGCGGTCGGGCTGCTGTTGAACTGCCGCGGGCGCGTCGTCGTGTCCG
GCATCGGCAAATCGGGGCATATCGCCCGCAAGATCGCCGCGACGCTCGCGAGCACCGGCACCCCCGCCTTTTTCGTCCAC
CCGGCCGAGGCGAGCCACGGCGACCTCGGCATGGTCACGAAGGACGACGTGTTCGTCGCGATCTCGAACTCCGGCGAATC
GGAGGAGCTCGTCGCGATCCTGCCGCTCATCAAGCGGCTCGGCGCGAAGCTGATCGCGATGACGGGCCGCCCGGCATCGA
GCTTGGCGACGCTGTCCGACGTCCACCTGAACGCGGGCGTCGCGAAGGAAGCCTGCCCGCTGAACCTCGCGCCGACGGCG
AGCACGACGGCCGCGCTCGCGCTCGGCGACGCGCTCGCCGTCGCGGTGCTCGACGCGCGCGGCTTCGGCTCCGACGATTT
CGCGCGCTCGCACCCGGGCGGCGCGCTCGGCCGGCGCCTGCTCACGTACGTGCGCGACGTGATGCGCACGGGCGACGAAG
TGCCCGCCGTGCCGCTCGACGCGACGCTCTCCGACGCCCTGTTCCAGATCACCGCGAAGCGCATGGGCATGACGGCCGTC
ATCGACGACGCGAACCGCGTGGCCGGCATCTTCACCGACGGCGACCTGCGCCGCGTGCTCGAGCGCGACGGCGATTTCCG
CCGGCTGCCGATCGTCGACGTGATGACGCGCCATCCGCGCACGATCGCGCCGGATCACCTCGCCGTCGAGGCGGTGGAAC
TGATGGAGCGCCACCGGATCAATCAGATGCTCGTCGTCGACGAGCGCGGCGCGCTGATCGGCGCGCTCAACATGCACGAT
CTGTTCTCGAAGAAGGTGATTTGA

Upstream 100 bases:

>100_bases
CGCCGCGCAACGGACGCCGGGGTGGGCCGGGAGACTACTCGGAAAAGGTGGGCGCAAGGGGCCCGGCGCGGCGAACAAAC
GCCTTTGCTATACTCCGCGC

Downstream 100 bases:

>100_bases
TGTCCGCGCCCCCTGCCACGGCGGCCGAACGCGCGAGCCGCGTGAAGCTGATGATTTTCGACGTCGACGGCGTGCTGACC
GACGGCGGCCTCCATTTCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MIAKINDDRALALARDVLDIEANAVRALAEQLDGEFVAAVGLLLNCRGRVVVSGIGKSGHIARKIAATLASTGTPAFFVH
PAEASHGDLGMVTKDDVFVAISNSGESEELVAILPLIKRLGAKLIAMTGRPASSLATLSDVHLNAGVAKEACPLNLAPTA
STTAALALGDALAVAVLDARGFGSDDFARSHPGGALGRRLLTYVRDVMRTGDEVPAVPLDATLSDALFQITAKRMGMTAV
IDDANRVAGIFTDGDLRRVLERDGDFRRLPIVDVMTRHPRTIAPDHLAVEAVELMERHRINQMLVVDERGALIGALNMHD
LFSKKVI

Sequences:

>Translated_327_residues
MIAKINDDRALALARDVLDIEANAVRALAEQLDGEFVAAVGLLLNCRGRVVVSGIGKSGHIARKIAATLASTGTPAFFVH
PAEASHGDLGMVTKDDVFVAISNSGESEELVAILPLIKRLGAKLIAMTGRPASSLATLSDVHLNAGVAKEACPLNLAPTA
STTAALALGDALAVAVLDARGFGSDDFARSHPGGALGRRLLTYVRDVMRTGDEVPAVPLDATLSDALFQITAKRMGMTAV
IDDANRVAGIFTDGDLRRVLERDGDFRRLPIVDVMTRHPRTIAPDHLAVEAVELMERHRINQMLVVDERGALIGALNMHD
LFSKKVI
>Mature_327_residues
MIAKINDDRALALARDVLDIEANAVRALAEQLDGEFVAAVGLLLNCRGRVVVSGIGKSGHIARKIAATLASTGTPAFFVH
PAEASHGDLGMVTKDDVFVAISNSGESEELVAILPLIKRLGAKLIAMTGRPASSLATLSDVHLNAGVAKEACPLNLAPTA
STTAALALGDALAVAVLDARGFGSDDFARSHPGGALGRRLLTYVRDVMRTGDEVPAVPLDATLSDALFQITAKRMGMTAV
IDDANRVAGIFTDGDLRRVLERDGDFRRLPIVDVMTRHPRTIAPDHLAVEAVELMERHRINQMLVVDERGALIGALNMHD
LFSKKVI

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=313, Percent_Identity=56.2300319488818, Blast_Score=343, Evalue=7e-96,
Organism=Escherichia coli, GI87082151, Length=313, Percent_Identity=48.5623003194888, Blast_Score=290, Evalue=1e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 34655; Mature: 34655

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAKINDDRALALARDVLDIEANAVRALAEQLDGEFVAAVGLLLNCRGRVVVSGIGKSGH
CCEEECCCHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCH
IARKIAATLASTGTPAFFVHPAEASHGDLGMVTKDDVFVAISNSGESEELVAILPLIKRL
HHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCEEEEEECCCCCHHHHHHHHHHHHC
GAKLIAMTGRPASSLATLSDVHLNAGVAKEACPLNLAPTASTTAALALGDALAVAVLDAR
CCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEEEECC
GFGSDDFARSHPGGALGRRLLTYVRDVMRTGDEVPAVPLDATLSDALFQITAKRMGMTAV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE
IDDANRVAGIFTDGDLRRVLERDGDFRRLPIVDVMTRHPRTIAPDHLAVEAVELMERHRI
EECCCCEEEEEECHHHHHHHHCCCCEEECCHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC
NQMLVVDERGALIGALNMHDLFSKKVI
CEEEEEECCCCEEEECCHHHHHHHCCC
>Mature Secondary Structure
MIAKINDDRALALARDVLDIEANAVRALAEQLDGEFVAAVGLLLNCRGRVVVSGIGKSGH
CCEEECCCHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCH
IARKIAATLASTGTPAFFVHPAEASHGDLGMVTKDDVFVAISNSGESEELVAILPLIKRL
HHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCEEEEEECCCCCHHHHHHHHHHHHC
GAKLIAMTGRPASSLATLSDVHLNAGVAKEACPLNLAPTASTTAALALGDALAVAVLDAR
CCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEEEECC
GFGSDDFARSHPGGALGRRLLTYVRDVMRTGDEVPAVPLDATLSDALFQITAKRMGMTAV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE
IDDANRVAGIFTDGDLRRVLERDGDFRRLPIVDVMTRHPRTIAPDHLAVEAVELMERHRI
EECCCCEEEEEECHHHHHHHHCCCCEEECCHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC
NQMLVVDERGALIGALNMHDLFSKKVI
CEEEEEECCCCEEEECCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]