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The map label for this gene is cydA [H]

Identifier: 53718142

GI number: 53718142

Start: 551745

End: 553340

Strand: Reverse

Name: cydA [H]

Synonym: BPSL0502

Alternate gene names: 53718142

Gene position: 553340-551745 (Counterclockwise)

Preceding gene: 53718143

Following gene: 53718141

Centisome position: 13.58

GC content: 64.22

Gene sequence:

>1596_bases
ATGATAAGTAGCGAAGTCGTCGATCTGTCGCGTCTGCAGTTCGGCATCACAGCGCTCTACCATTTCCTGTTCGTTCCGCT
CACGCTCGGCATGTCCTGGCTGCTCGTCATCATGGAAGCCGTCTACGTGATGACGGGCAAGCAGGTCTACAAGGACATGA
CCCAGTTCTGGGGCAAGCTCTTCGGGATCAACTTCGCGATGGGCGTGACGACGGGCATCACGCTCGAATTCCAGTTCGGC
ACGAACTGGTCGTACTACTCGCACTACGTCGGCGACATCTTCGGCGTGCCGCTCGCCGTCGAAGGGCTGATGGCGTTCTT
CCTCGAATCGACGTTCGTCGGCCTGTTCTTCTTCGGCTGGAACCGGCTGTCGAAGGTCCAGCATCTGGTCGTCACGTTCC
TCGTCGCGCTCGGCTCGAACCTGTCCGCGCTGTGGATCCTCGTCGCGAACGGCTGGATGAACAATCCGGTCGGCGCCGAG
TTCAACTACCAGACGATGCGCATGGAGCTCGCGAACCTGTTCGACGTGCTCTTCAACCCGGTCGCGCAGGTGAAGTTCGT
GCACACGGTATCGGCGGGCTACGTGACGGCCGCGATGTTCGTGCTCGGCGTGTCCGCGTGGTATCTGCTGAAGAAGCGCG
ACGTCGATTTCGCGCTGCGCTCGTTCGCGATCGCCGCGGGCTTCGGCCTCGCGTCGACGCTCTGCGTGATCGTGCTCGGC
GACGAATCGGGCTACACGACGGGCGAAGTGCAGAAGATGAAGCTCGCCGCGATCGAATCCGAATGGGAAACGCAGCCCGC
GCCCGCGTCGTTCACGCTGATCGGGCTGCCGAACCAGGAGGCGGAGCGCACCGATTACGCGATCAAGATCCCGTACGCGC
TCGGCCTCATCGCGACGCGCTCGGTCAGCGAGCCGGTGATCGGCCTGCGCGAACTCGCCAAGCGCAGCGAGGAGCACATC
CAGAGCGGCATGATCGCGTACGGCGCGCTGCAGAAGCTGAAGGCGGGCGACACGAGCGCCGAGACGAAGGCGACGTTCGA
TCAGCACAAGCAGTATCTCGGCTACGGCCTGATGCTCAAGCAGTTCACGCAGAACGTGACCGACGCGACGCCGGACCAGA
TCAAGGCCGCGGCGAAGCAGACGATTCCGCCCGTCGCGCCCGTGTTCTTCTCGTTCCGGATCATGGTGTTCCTCGGCTTC
CTGTTCCTCGCGACCTTCATCGCCGCGTTCTGGTTCTGCGCGCGCCGCCAGTTGCTGCAGGACAACCGCCGCTGGTTCCT
GCGCTATGCGGTGTGGGCGATTCCGCTGCCGTGGCTCGCCGCCGAGTTCGGCTGGGTCGTCGCCGAAGTGGGCCGCCAGC
CGTGGACGATCGCGGGCATCCTGCCGACGCACCTGTCCGCGTCGAGCCTCACGGCAACCGATCTGTACCTGAGCCTCGCG
GGCTTCATCGTGTTCTACACGGCGCTCTTCATCATCGAGATCACGCTGATGTTCAAGTACGCGCGCCTCGGCCCGTCGTC
GCTGCACACCGGCCGCTATCACCACGAACAGGCAGGGCGGCCGCTCGAGAAGGCCGTCGCGGGCACGGCCGCGTGA

Upstream 100 bases:

>100_bases
TTCAACCATCCGCAGGCCGCGCACATGTCGTTGCCGCCTGCCGTCGTCGCCGCGCAACTGCTGTCGGCGACGCCATCCGC
ACCCACTGAGGGAGACCGCC

Downstream 100 bases:

>100_bases
CGGCCCCGGCCCCCTCGAATTCGCACAAGGAATCGCCATGGACTATGCAACTCTGAAAGTGATCTGGTGGCTGCTCGTCG
GGATACTGCTCATCGGCTTC

Product: cytochrome d ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 531; Mature: 531

Protein sequence:

>531_residues
MISSEVVDLSRLQFGITALYHFLFVPLTLGMSWLLVIMEAVYVMTGKQVYKDMTQFWGKLFGINFAMGVTTGITLEFQFG
TNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGWNRLSKVQHLVVTFLVALGSNLSALWILVANGWMNNPVGAE
FNYQTMRMELANLFDVLFNPVAQVKFVHTVSAGYVTAAMFVLGVSAWYLLKKRDVDFALRSFAIAAGFGLASTLCVIVLG
DESGYTTGEVQKMKLAAIESEWETQPAPASFTLIGLPNQEAERTDYAIKIPYALGLIATRSVSEPVIGLRELAKRSEEHI
QSGMIAYGALQKLKAGDTSAETKATFDQHKQYLGYGLMLKQFTQNVTDATPDQIKAAAKQTIPPVAPVFFSFRIMVFLGF
LFLATFIAAFWFCARRQLLQDNRRWFLRYAVWAIPLPWLAAEFGWVVAEVGRQPWTIAGILPTHLSASSLTATDLYLSLA
GFIVFYTALFIIEITLMFKYARLGPSSLHTGRYHHEQAGRPLEKAVAGTAA

Sequences:

>Translated_531_residues
MISSEVVDLSRLQFGITALYHFLFVPLTLGMSWLLVIMEAVYVMTGKQVYKDMTQFWGKLFGINFAMGVTTGITLEFQFG
TNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGWNRLSKVQHLVVTFLVALGSNLSALWILVANGWMNNPVGAE
FNYQTMRMELANLFDVLFNPVAQVKFVHTVSAGYVTAAMFVLGVSAWYLLKKRDVDFALRSFAIAAGFGLASTLCVIVLG
DESGYTTGEVQKMKLAAIESEWETQPAPASFTLIGLPNQEAERTDYAIKIPYALGLIATRSVSEPVIGLRELAKRSEEHI
QSGMIAYGALQKLKAGDTSAETKATFDQHKQYLGYGLMLKQFTQNVTDATPDQIKAAAKQTIPPVAPVFFSFRIMVFLGF
LFLATFIAAFWFCARRQLLQDNRRWFLRYAVWAIPLPWLAAEFGWVVAEVGRQPWTIAGILPTHLSASSLTATDLYLSLA
GFIVFYTALFIIEITLMFKYARLGPSSLHTGRYHHEQAGRPLEKAVAGTAA
>Mature_531_residues
MISSEVVDLSRLQFGITALYHFLFVPLTLGMSWLLVIMEAVYVMTGKQVYKDMTQFWGKLFGINFAMGVTTGITLEFQFG
TNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGWNRLSKVQHLVVTFLVALGSNLSALWILVANGWMNNPVGAE
FNYQTMRMELANLFDVLFNPVAQVKFVHTVSAGYVTAAMFVLGVSAWYLLKKRDVDFALRSFAIAAGFGLASTLCVIVLG
DESGYTTGEVQKMKLAAIESEWETQPAPASFTLIGLPNQEAERTDYAIKIPYALGLIATRSVSEPVIGLRELAKRSEEHI
QSGMIAYGALQKLKAGDTSAETKATFDQHKQYLGYGLMLKQFTQNVTDATPDQIKAAAKQTIPPVAPVFFSFRIMVFLGF
LFLATFIAAFWFCARRQLLQDNRRWFLRYAVWAIPLPWLAAEFGWVVAEVGRQPWTIAGILPTHLSASSLTATDLYLSLA
GFIVFYTALFIIEITLMFKYARLGPSSLHTGRYHHEQAGRPLEKAVAGTAA

Specific function: May be involved in maintaining the low intracellular oxygen concentration required for nitrogen fixation [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=521, Percent_Identity=64.8752399232246, Blast_Score=715, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=514, Percent_Identity=54.0856031128405, Blast_Score=565, Evalue=1e-162,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 59125; Mature: 59125

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISSEVVDLSRLQFGITALYHFLFVPLTLGMSWLLVIMEAVYVMTGKQVYKDMTQFWGKL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGINFAMGVTTGITLEFQFGTNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGW
HCCHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
NRLSKVQHLVVTFLVALGSNLSALWILVANGWMNNPVGAEFNYQTMRMELANLFDVLFNP
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCH
VAQVKFVHTVSAGYVTAAMFVLGVSAWYLLKKRDVDFALRSFAIAAGFGLASTLCVIVLG
HHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEEEEEE
DESGYTTGEVQKMKLAAIESEWETQPAPASFTLIGLPNQEAERTDYAIKIPYALGLIATR
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCEEECCHHHHHHHHC
SVSEPVIGLRELAKRSEEHIQSGMIAYGALQKLKAGDTSAETKATFDQHKQYLGYGLMLK
CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
QFTQNVTDATPDQIKAAAKQTIPPVAPVFFSFRIMVFLGFLFLATFIAAFWFCARRQLLQ
HHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DNRRWFLRYAVWAIPLPWLAAEFGWVVAEVGRQPWTIAGILPTHLSASSLTATDLYLSLA
CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEEECHHCCCCCCCHHHHHHHHHH
GFIVFYTALFIIEITLMFKYARLGPSSLHTGRYHHEQAGRPLEKAVAGTAA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCHHHHHCCCCC
>Mature Secondary Structure
MISSEVVDLSRLQFGITALYHFLFVPLTLGMSWLLVIMEAVYVMTGKQVYKDMTQFWGKL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGINFAMGVTTGITLEFQFGTNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGW
HCCHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
NRLSKVQHLVVTFLVALGSNLSALWILVANGWMNNPVGAEFNYQTMRMELANLFDVLFNP
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCH
VAQVKFVHTVSAGYVTAAMFVLGVSAWYLLKKRDVDFALRSFAIAAGFGLASTLCVIVLG
HHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEEEEEE
DESGYTTGEVQKMKLAAIESEWETQPAPASFTLIGLPNQEAERTDYAIKIPYALGLIATR
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCEEECCHHHHHHHHC
SVSEPVIGLRELAKRSEEHIQSGMIAYGALQKLKAGDTSAETKATFDQHKQYLGYGLMLK
CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
QFTQNVTDATPDQIKAAAKQTIPPVAPVFFSFRIMVFLGFLFLATFIAAFWFCARRQLLQ
HHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DNRRWFLRYAVWAIPLPWLAAEFGWVVAEVGRQPWTIAGILPTHLSASSLTATDLYLSLA
CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEEECHHCCCCCCCHHHHHHHHHH
GFIVFYTALFIIEITLMFKYARLGPSSLHTGRYHHEQAGRPLEKAVAGTAA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1655703; 1660468; 2170336 [H]