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The map label for this gene is cydB [H]

Identifier: 53718141

GI number: 53718141

Start: 550571

End: 551707

Strand: Reverse

Name: cydB [H]

Synonym: BPSL0501

Alternate gene names: 53718141

Gene position: 551707-550571 (Counterclockwise)

Preceding gene: 53718142

Following gene: 53718140

Centisome position: 13.54

GC content: 66.23

Gene sequence:

>1137_bases
ATGGACTATGCAACTCTGAAAGTGATCTGGTGGCTGCTCGTCGGGATACTGCTCATCGGCTTCGCGCTGACGGACGGCTT
CGACATGGGCGTGGCCGCGCTCCTGCCGTTCCTCGGCAAGACCGACGACGAGCGCCGCATCATCGTCAACACGGTCGGCG
CGACGTGGGAAGGCAACCAGGTCTGGCTCATCACCGCGGGCGGCGCGATGTTCGCCGCGTGGCCGCTCGTCTACGCGGCG
TCGTTCTCGGGCTTCTACTTCGCGATGCTGCTCGTGCTGTTCGCGCTGTTTTTCCGCCCCGTCGGCTTCGACTACCGCAG
CAAGCGCGACGATCCGCGCTGGCGCACGAGCTGGGACTGGGCGCTCTTCGCGGGCGGCTTCGTGCCCGCGCTCGTGTTCG
GCGTCGCGTTCGGCAACCTGCTGCAAGGCGTGCCGTTCGCGTTCGACACCGACATGCGCGTCACCTATCACGGCAGCTTC
TGGGCGCTGCTCAATCCGTTCGCGCTGCTCTGCGGGCTCGTGAGCCTGACGATGCTCGTCGCGCACGGCGCCGCGTTCGT
CAAGATGAAGACCGACGGCGCGATCGCCAGGCGCGCGTCGATCGCGCTGCGTGTGTCGTCGCTCGTCGCCGTCGTGCTGT
TCGTGCTCGCGGGCGCGCTGATCGCATCCTTCATCGGCGGCTTCCAGATCACGCAGGCGGCGCCCCTCGATACCGTCGCG
AATCCGCTGCTCAAGCAGGCCTCGACGGCGCCGGGCCTCTGGCTCGTGAATTACGGGCTGTATCCGTGGATGATCGCCGC
GCCCGCCGTCGGCATCGCGGGCGGCGTGCTCGCGATGCTGCTCGCCGGCTCGAAGCGCGAGAAAACCGCGTTCATCTGCA
CGGGCCTGATGATCACCGGCGTGATCCTCACGGCGGGCTTCTCGATGTTCCCCTTCATCATGCCTTCGTCGCTCGATCCG
AAGAGCAGCCTGACGGTGTGGGATTCGACGTCGAGCCAGTTGACGCTCGAGGTGATGCTCGTCGCGGTGATCGTGTTCCT
GCCGATCATCCTGCTCTACACGGGCTGGGTGTATCGCGTGCTGCGCGGCAAGGTGACGCCGCGCGTACTCGACGAAAACC
GGCACTCGATGTATTGA

Upstream 100 bases:

>100_bases
CGCTATCACCACGAACAGGCAGGGCGGCCGCTCGAGAAGGCCGTCGCGGGCACGGCCGCGTGACGGCCCCGGCCCCCTCG
AATTCGCACAAGGAATCGCC

Downstream 100 bases:

>100_bases
CGTCCCGCCGGCCGCCGCGTGCGACGCATCGCGCGGCCGGCCTTTCGCGCGATTTTCGCTAGATTCTGCAAGTTTCGAAG
GAGTCGGATCATGTGGTACT

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MDYATLKVIWWLLVGILLIGFALTDGFDMGVAALLPFLGKTDDERRIIVNTVGATWEGNQVWLITAGGAMFAAWPLVYAA
SFSGFYFAMLLVLFALFFRPVGFDYRSKRDDPRWRTSWDWALFAGGFVPALVFGVAFGNLLQGVPFAFDTDMRVTYHGSF
WALLNPFALLCGLVSLTMLVAHGAAFVKMKTDGAIARRASIALRVSSLVAVVLFVLAGALIASFIGGFQITQAAPLDTVA
NPLLKQASTAPGLWLVNYGLYPWMIAAPAVGIAGGVLAMLLAGSKREKTAFICTGLMITGVILTAGFSMFPFIMPSSLDP
KSSLTVWDSTSSQLTLEVMLVAVIVFLPIILLYTGWVYRVLRGKVTPRVLDENRHSMY

Sequences:

>Translated_378_residues
MDYATLKVIWWLLVGILLIGFALTDGFDMGVAALLPFLGKTDDERRIIVNTVGATWEGNQVWLITAGGAMFAAWPLVYAA
SFSGFYFAMLLVLFALFFRPVGFDYRSKRDDPRWRTSWDWALFAGGFVPALVFGVAFGNLLQGVPFAFDTDMRVTYHGSF
WALLNPFALLCGLVSLTMLVAHGAAFVKMKTDGAIARRASIALRVSSLVAVVLFVLAGALIASFIGGFQITQAAPLDTVA
NPLLKQASTAPGLWLVNYGLYPWMIAAPAVGIAGGVLAMLLAGSKREKTAFICTGLMITGVILTAGFSMFPFIMPSSLDP
KSSLTVWDSTSSQLTLEVMLVAVIVFLPIILLYTGWVYRVLRGKVTPRVLDENRHSMY
>Mature_378_residues
MDYATLKVIWWLLVGILLIGFALTDGFDMGVAALLPFLGKTDDERRIIVNTVGATWEGNQVWLITAGGAMFAAWPLVYAA
SFSGFYFAMLLVLFALFFRPVGFDYRSKRDDPRWRTSWDWALFAGGFVPALVFGVAFGNLLQGVPFAFDTDMRVTYHGSF
WALLNPFALLCGLVSLTMLVAHGAAFVKMKTDGAIARRASIALRVSSLVAVVLFVLAGALIASFIGGFQITQAAPLDTVA
NPLLKQASTAPGLWLVNYGLYPWMIAAPAVGIAGGVLAMLLAGSKREKTAFICTGLMITGVILTAGFSMFPFIMPSSLDP
KSSLTVWDSTSSQLTLEVMLVAVIVFLPIILLYTGWVYRVLRGKVTPRVLDENRHSMY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=378, Percent_Identity=52.9100529100529, Blast_Score=405, Evalue=1e-114,
Organism=Escherichia coli, GI1787213, Length=377, Percent_Identity=51.9893899204244, Blast_Score=389, Evalue=1e-109,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 41141; Mature: 41141

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYATLKVIWWLLVGILLIGFALTDGFDMGVAALLPFLGKTDDERRIIVNTVGATWEGNQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCE
VWLITAGGAMFAAWPLVYAASFSGFYFAMLLVLFALFFRPVGFDYRSKRDDPRWRTSWDW
EEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
ALFAGGFVPALVFGVAFGNLLQGVPFAFDTDMRVTYHGSFWALLNPFALLCGLVSLTMLV
HHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHH
AHGAAFVKMKTDGAIARRASIALRVSSLVAVVLFVLAGALIASFIGGFQITQAAPLDTVA
HCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHH
NPLLKQASTAPGLWLVNYGLYPWMIAAPAVGIAGGVLAMLLAGSKREKTAFICTGLMITG
HHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
VILTAGFSMFPFIMPSSLDPKSSLTVWDSTSSQLTLEVMLVAVIVFLPIILLYTGWVYRV
HHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRGKVTPRVLDENRHSMY
HHCCCCCHHHCCCCCCCC
>Mature Secondary Structure
MDYATLKVIWWLLVGILLIGFALTDGFDMGVAALLPFLGKTDDERRIIVNTVGATWEGNQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCE
VWLITAGGAMFAAWPLVYAASFSGFYFAMLLVLFALFFRPVGFDYRSKRDDPRWRTSWDW
EEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
ALFAGGFVPALVFGVAFGNLLQGVPFAFDTDMRVTYHGSFWALLNPFALLCGLVSLTMLV
HHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHH
AHGAAFVKMKTDGAIARRASIALRVSSLVAVVLFVLAGALIASFIGGFQITQAAPLDTVA
HCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHH
NPLLKQASTAPGLWLVNYGLYPWMIAAPAVGIAGGVLAMLLAGSKREKTAFICTGLMITG
HHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
VILTAGFSMFPFIMPSSLDPKSSLTVWDSTSSQLTLEVMLVAVIVFLPIILLYTGWVYRV
HHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRGKVTPRVLDENRHSMY
HHCCCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]