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The map label for this gene is ltrA [H]

Identifier: 53718057

GI number: 53718057

Start: 452345

End: 453247

Strand: Reverse

Name: ltrA [H]

Synonym: BPSL0418

Alternate gene names: 53718057

Gene position: 453247-452345 (Counterclockwise)

Preceding gene: 53718067

Following gene: 53718055

Centisome position: 11.12

GC content: 67.88

Gene sequence:

>903_bases
ATGGATCTGAATGCGCTCACGCTGCTCGTCGACATCCTCGACGCGGGCAATCTCAGCAAGGCGGCGCAGCGGCTCAAGAT
GAGCCGCGCGAACGTCAGCTACCGGCTCAACCAGCTGGAGAAGTCGATCGGGCTGCAGCTCGTGCGCCGCACGACGCGGC
GCATCGAGCCGACCGAGATCGGGTTGCGCCTGTACGAGCACGGCCGGCGCATTCAGAGCGAGCTGTTCGCCGCGCGCGAG
GCGGTGACGACGCTCGGCCAGGACTTGCAGGGGCGCGTGCGGCTGTCGGTGCCGAGCGGCTACGGGCAACTCGTGATGTC
GAACTGGCTGATCGCGTTCAAGCGGCTCTATCCGGGGATCGTGCTCGACGTCGTGTTCGAGAACCGCATCGAGGATCTGA
TGCGCGACGAAGTCGACATCGCGGTGCGCGTGATGTCCGAGCCGCCGCAGAACCTCGTCGCGCGCGACATGGGCGCGGTG
CGCTACGTCGCGTGCGCGTCGCCCGGCTTCGCCGCGACGCACGGGATGCCGACCGAGCTCGGCCAACTGTTCGACGCGCC
CGTCATCACGTCGACGGTGGTCGGCCGGCAATTGCGGGTGGCCGCGTACCTCGGCGACGAGCGGCACGAGGTGCTGCTCG
AGCCGACGCTCATCTCCGAGAACTTCCTGTTCCTGCGGCAGGCGATCCTCGCCGGGCTCGGCGTGGGGATCGTGCCGGAT
TACGTCGTCCACGACGACGTGCGGCGCGGCGCCGTCGTCACGACGCTCGACGCGTACCGGCTCAGCATCTTCGGCACGCA
CATGTACATGCTGTACATGCCGAACCGCCATCACACGCGCGCGACGTCGACGTTCATCGATTTCATGCTGGAGGAAGCGA
GGAACGCCGGGCGCGGGGGGTGA

Upstream 100 bases:

>100_bases
CCACGATTCTCGATTGATCTAGATTGATTGACAATTCCAGCATTCTTTAACAACCTGTCAAGCCTGTTTTGACAATGAAC
TTCGATATGCGGGCACGGCG

Downstream 100 bases:

>100_bases
CGGGGTGACGGGGTGACGGGGTGACGGGGCGACGGGGCGACGGGGCGACGGGGCGACGGGGCGACGGGGCGACGGGGCGA
CGGGGCGACGGGGCGACGGG

Product: LysR family regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEIGLRLYEHGRRIQSELFAARE
AVTTLGQDLQGRVRLSVPSGYGQLVMSNWLIAFKRLYPGIVLDVVFENRIEDLMRDEVDIAVRVMSEPPQNLVARDMGAV
RYVACASPGFAATHGMPTELGQLFDAPVITSTVVGRQLRVAAYLGDERHEVLLEPTLISENFLFLRQAILAGLGVGIVPD
YVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFMLEEARNAGRGG

Sequences:

>Translated_300_residues
MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEIGLRLYEHGRRIQSELFAARE
AVTTLGQDLQGRVRLSVPSGYGQLVMSNWLIAFKRLYPGIVLDVVFENRIEDLMRDEVDIAVRVMSEPPQNLVARDMGAV
RYVACASPGFAATHGMPTELGQLFDAPVITSTVVGRQLRVAAYLGDERHEVLLEPTLISENFLFLRQAILAGLGVGIVPD
YVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFMLEEARNAGRGG
>Mature_300_residues
MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEIGLRLYEHGRRIQSELFAARE
AVTTLGQDLQGRVRLSVPSGYGQLVMSNWLIAFKRLYPGIVLDVVFENRIEDLMRDEVDIAVRVMSEPPQNLVARDMGAV
RYVACASPGFAATHGMPTELGQLFDAPVITSTVVGRQLRVAAYLGDERHEVLLEPTLISENFLFLRQAILAGLGVGIVPD
YVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFMLEEARNAGRGG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=292, Percent_Identity=26.3698630136986, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI87081978, Length=301, Percent_Identity=27.5747508305648, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1786401, Length=302, Percent_Identity=25.8278145695364, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789639, Length=260, Percent_Identity=24.6153846153846, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1789440, Length=272, Percent_Identity=25, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1787589, Length=289, Percent_Identity=23.1833910034602, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788706, Length=162, Percent_Identity=30.8641975308642, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788297, Length=252, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787128, Length=296, Percent_Identity=19.5945945945946, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1786508, Length=253, Percent_Identity=23.7154150197628, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33539; Mature: 33539

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
GLRLYEHGRRIQSELFAAREAVTTLGQDLQGRVRLSVPSGYGQLVMSNWLIAFKRLYPGI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCH
VLDVVFENRIEDLMRDEVDIAVRVMSEPPQNLVARDMGAVRYVACASPGFAATHGMPTEL
HHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHCHHEEEEECCCCCCCCCCCHHHH
GQLFDAPVITSTVVGRQLRVAAYLGDERHEVLLEPTLISENFLFLRQAILAGLGVGIVPD
HHHHCCCHHHHHHHHHHHEEHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCC
YVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFMLEEARNAGRGG
HHHHHHHHCCEEEEEHHHHHHHHEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
GLRLYEHGRRIQSELFAAREAVTTLGQDLQGRVRLSVPSGYGQLVMSNWLIAFKRLYPGI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCH
VLDVVFENRIEDLMRDEVDIAVRVMSEPPQNLVARDMGAVRYVACASPGFAATHGMPTEL
HHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHCHHEEEEECCCCCCCCCCCHHHH
GQLFDAPVITSTVVGRQLRVAAYLGDERHEVLLEPTLISENFLFLRQAILAGLGVGIVPD
HHHHCCCHHHHHHHHHHHEEHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCC
YVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFMLEEARNAGRGG
HHHHHHHHCCEEEEEHHHHHHHHEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]