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The map label for this gene is aidB [H]

Identifier: 53717865

GI number: 53717865

Start: 231828

End: 233507

Strand: Reverse

Name: aidB [H]

Synonym: BPSL0223

Alternate gene names: 53717865

Gene position: 233507-231828 (Counterclockwise)

Preceding gene: 53717867

Following gene: 53717864

Centisome position: 5.73

GC content: 69.76

Gene sequence:

>1680_bases
ATGCAGCAGGACCTGATGACGGCGACGCACCGGGTGACGAACCAGGCGCCGCCGCTTTCCGATTACAACGCGTTTGAAAC
CGATGCCGCGCTCGTCGAGGCCGTTCGACGGTACGGCGCGAGCTGGCGTCAAACGGCGCTCTCGCACGACGGCGCCGCGC
TGACGACGCCCGATGTGCTCGCGCTCGCCGATCTCGCGAACCGGCACGCACCCGAGCTGGCGACGCACAGCCCGCGCGGC
GAGCGGATCGACGCACTCGAATTCCACCCGAGCTGGCACCAGTTGCTTGCCCGGTTGCGCGCCGAAGGGCTGCACGCGCT
GCCGTTCTCGGACCCGCAGCCGGGCGCGATGGCCGCGCGCTGCGCCGGCTATTTCCTGCACGCGCAGCTCGAATCCGGCT
CGCTCTGCCCGCTCACGATGACGTTCGCGAGCATTCCGGTGCTGCAACGAGAACCGGCCCTCTTTGCGACGCTGCGCGAC
AAGCTCTATGCACGCGAGCACGACGCGCGCGATGCGCCGCTGCCGCAAAAACGCTCGATGATGGTCGGCATGGGCATGAC
CGAAAAGCAGGGCGGCTCCGACGTGCGCAGCAACGAGACGCACGCGTACCCGCTCGGCGCGGGCGGGCGCGGGCAGGCGT
ACCGGCTCGTCGGCCACAAATGGTTCTTCTCCGCGCCGCAGTGCGACGCGCATCTCGTGCTCGCGCGCACCGCCGAGCAA
GCGGGCATCTCATGCTTCTACGTGCCGCGCTTCTCGCCCGACGGCAGCAAGAACGCGGTGCACGTGCAACGCCTGAAGGA
CAAGCTCGGCAACCGCTCGAATGCGAGCAGCGAAGTCGAATTCCTGAACGCATACGGCGTGATGATCGGCGACGAAGGGC
GCGGCGTGCCGACGATCATCGAGATGGCGAACTACACGCGGCTCGATTGCGTGATCGGCAGCGCCGCGCTGATGCGCGCG
GCGCTCGTGCAGGCGATTCACCACGCGCGGCATCGCAGCGCATTCGGCCGCCTGCTCGCCGATCAGCCGCTGATGCGCAA
CGTGCTCGCCGATCTCGCGCTCGAATCGGAAGCGGCGACCGTGCTTTTCATGCGGCTCGCGCACGCGTTCGAGGAAGACG
CGGCCGCGCGCTCGCCGCAGGCGCGCGGCTGGCGCCGCATCGTCACGCCGGCCGCGAAGTTCTGGGTCTGCAAGCGCACG
CTCGAATTCACGGGCGAGGCAATGGAAGTATGGGGCGGCAACGGCTACGTCGAAACCGGGCCGATGGCGCGCTTCTATCG
CGAAGCGCCCGTCAATTCGATCTGGGAAGGCTCGGGCAACGTGATGTGCATCGACGTGCTGCGCGCGATCGAGCGCGAGC
CCGACGCGGCCGCCGCGCTCTTCGACGAATGGCGCGACGCGGCGCGGCACAGCGCGCCGCTCGCCGGCGCGCTCGCGGAA
CTGACGCGCCTGCTGTCGCTCGAACCCGAGCCGCGCGAAGCCTGCGCGCGCCGGATCGCACAACGCATCGCACTCGTCGC
GCAGGCCTCGCTGCTGCTGCGCGACGGCCCCTACGCCGTCGCGCAGGCGTTCGTCGCCACGCGCTTCGGCCACGACAGCA
GCGAAACCGGACGCGTCTTCGGCACGCTGCCGGCCACCATCGATCACGCCGCGCTCGTCGAGCGGGCGTTCCCGGCCTGA

Upstream 100 bases:

>100_bases
TCTAAACGTCGGCGTGAACTAAATTTAAGATGACTGGATTCGCCTCGCGCGGAGGACGCGGCCAATAGAAGCCGGGCCCC
GCGAAATGGGAGACAAAGGC

Downstream 100 bases:

>100_bases
ATGCCGGCCACACCCGTATCGCAAAGGAGACGCCATGAAGAACGATCTGCCCGGTTTAGCCACGCTCGACGCGCTGTTGC
GCGACCAGCGCGCCGCCTAT

Product: putative acyl-CoA dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 559; Mature: 559

Protein sequence:

>559_residues
MQQDLMTATHRVTNQAPPLSDYNAFETDAALVEAVRRYGASWRQTALSHDGAALTTPDVLALADLANRHAPELATHSPRG
ERIDALEFHPSWHQLLARLRAEGLHALPFSDPQPGAMAARCAGYFLHAQLESGSLCPLTMTFASIPVLQREPALFATLRD
KLYAREHDARDAPLPQKRSMMVGMGMTEKQGGSDVRSNETHAYPLGAGGRGQAYRLVGHKWFFSAPQCDAHLVLARTAEQ
AGISCFYVPRFSPDGSKNAVHVQRLKDKLGNRSNASSEVEFLNAYGVMIGDEGRGVPTIIEMANYTRLDCVIGSAALMRA
ALVQAIHHARHRSAFGRLLADQPLMRNVLADLALESEAATVLFMRLAHAFEEDAAARSPQARGWRRIVTPAAKFWVCKRT
LEFTGEAMEVWGGNGYVETGPMARFYREAPVNSIWEGSGNVMCIDVLRAIEREPDAAAALFDEWRDAARHSAPLAGALAE
LTRLLSLEPEPREACARRIAQRIALVAQASLLLRDGPYAVAQAFVATRFGHDSSETGRVFGTLPATIDHAALVERAFPA

Sequences:

>Translated_559_residues
MQQDLMTATHRVTNQAPPLSDYNAFETDAALVEAVRRYGASWRQTALSHDGAALTTPDVLALADLANRHAPELATHSPRG
ERIDALEFHPSWHQLLARLRAEGLHALPFSDPQPGAMAARCAGYFLHAQLESGSLCPLTMTFASIPVLQREPALFATLRD
KLYAREHDARDAPLPQKRSMMVGMGMTEKQGGSDVRSNETHAYPLGAGGRGQAYRLVGHKWFFSAPQCDAHLVLARTAEQ
AGISCFYVPRFSPDGSKNAVHVQRLKDKLGNRSNASSEVEFLNAYGVMIGDEGRGVPTIIEMANYTRLDCVIGSAALMRA
ALVQAIHHARHRSAFGRLLADQPLMRNVLADLALESEAATVLFMRLAHAFEEDAAARSPQARGWRRIVTPAAKFWVCKRT
LEFTGEAMEVWGGNGYVETGPMARFYREAPVNSIWEGSGNVMCIDVLRAIEREPDAAAALFDEWRDAARHSAPLAGALAE
LTRLLSLEPEPREACARRIAQRIALVAQASLLLRDGPYAVAQAFVATRFGHDSSETGRVFGTLPATIDHAALVERAFPA
>Mature_559_residues
MQQDLMTATHRVTNQAPPLSDYNAFETDAALVEAVRRYGASWRQTALSHDGAALTTPDVLALADLANRHAPELATHSPRG
ERIDALEFHPSWHQLLARLRAEGLHALPFSDPQPGAMAARCAGYFLHAQLESGSLCPLTMTFASIPVLQREPALFATLRD
KLYAREHDARDAPLPQKRSMMVGMGMTEKQGGSDVRSNETHAYPLGAGGRGQAYRLVGHKWFFSAPQCDAHLVLARTAEQ
AGISCFYVPRFSPDGSKNAVHVQRLKDKLGNRSNASSEVEFLNAYGVMIGDEGRGVPTIIEMANYTRLDCVIGSAALMRA
ALVQAIHHARHRSAFGRLLADQPLMRNVLADLALESEAATVLFMRLAHAFEEDAAARSPQARGWRRIVTPAAKFWVCKRT
LEFTGEAMEVWGGNGYVETGPMARFYREAPVNSIWEGSGNVMCIDVLRAIEREPDAAAALFDEWRDAARHSAPLAGALAE
LTRLLSLEPEPREACARRIAQRIALVAQASLLLRDGPYAVAQAFVATRFGHDSSETGRVFGTLPATIDHAALVERAFPA

Specific function: May help to prevent alkylation damage by protecting DNA and destroying alkylating agents [H]

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI226958412, Length=277, Percent_Identity=28.158844765343, Blast_Score=84, Evalue=4e-16,
Organism=Homo sapiens, GI226958414, Length=277, Percent_Identity=28.158844765343, Blast_Score=83, Evalue=6e-16,
Organism=Homo sapiens, GI4501859, Length=367, Percent_Identity=25.8855585831063, Blast_Score=81, Evalue=3e-15,
Organism=Homo sapiens, GI4557233, Length=263, Percent_Identity=26.2357414448669, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI7656849, Length=277, Percent_Identity=27.4368231046931, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI187960098, Length=281, Percent_Identity=24.9110320284698, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI4557231, Length=281, Percent_Identity=24.9110320284698, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI87082384, Length=519, Percent_Identity=47.3988439306358, Blast_Score=451, Evalue=1e-128,
Organism=Escherichia coli, GI87081958, Length=279, Percent_Identity=23.2974910394265, Blast_Score=62, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI86563383, Length=488, Percent_Identity=28.2786885245902, Blast_Score=170, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI86563381, Length=488, Percent_Identity=28.2786885245902, Blast_Score=170, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI17538396, Length=280, Percent_Identity=28.9285714285714, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17508101, Length=297, Percent_Identity=26.2626262626263, Blast_Score=83, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17506239, Length=250, Percent_Identity=26, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17505929, Length=287, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17551932, Length=272, Percent_Identity=27.2058823529412, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21355753, Length=268, Percent_Identity=25.7462686567164, Blast_Score=84, Evalue=3e-16,
Organism=Drosophila melanogaster, GI21356377, Length=299, Percent_Identity=24.7491638795987, Blast_Score=76, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24646207, Length=299, Percent_Identity=22.4080267558528, Blast_Score=73, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M [H]

EC number: NA

Molecular weight: Translated: 61115; Mature: 61115

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: PS00072 ACYL_COA_DH_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQDLMTATHRVTNQAPPLSDYNAFETDAALVEAVRRYGASWRQTALSHDGAALTTPDVL
CCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHH
ALADLANRHAPELATHSPRGERIDALEFHPSWHQLLARLRAEGLHALPFSDPQPGAMAAR
HHHHHHHCCCCCHHCCCCCCCCCCEEEECCCHHHHHHHHHHCCCEECCCCCCCCCHHHHH
CAGYFLHAQLESGSLCPLTMTFASIPVLQREPALFATLRDKLYAREHDARDAPLPQKRSM
HHHHEEEEEECCCCCCCEEHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCE
MVGMGMTEKQGGSDVRSNETHAYPLGAGGRGQAYRLVGHKWFFSAPQCDAHLVLARTAEQ
EECCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCEEECCCCCCCCEEEEEECHHH
AGISCFYVPRFSPDGSKNAVHVQRLKDKLGNRSNASSEVEFLNAYGVMIGDEGRGVPTII
CCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHEEEEEECCCCCCCHHHH
EMANYTRLDCVIGSAALMRAALVQAIHHARHRSAFGRLLADQPLMRNVLADLALESEAAT
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHH
VLFMRLAHAFEEDAAARSPQARGWRRIVTPAAKFWVCKRTLEFTGEAMEVWGGNGYVETG
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEECC
PMARFYREAPVNSIWEGSGNVMCIDVLRAIEREPDAAAALFDEWRDAARHSAPLAGALAE
HHHHHHHHCCCCHHHCCCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
LTRLLSLEPEPREACARRIAQRIALVAQASLLLRDGPYAVAQAFVATRFGHDSSETGRVF
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEE
GTLPATIDHAALVERAFPA
ECCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MQQDLMTATHRVTNQAPPLSDYNAFETDAALVEAVRRYGASWRQTALSHDGAALTTPDVL
CCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHH
ALADLANRHAPELATHSPRGERIDALEFHPSWHQLLARLRAEGLHALPFSDPQPGAMAAR
HHHHHHHCCCCCHHCCCCCCCCCCEEEECCCHHHHHHHHHHCCCEECCCCCCCCCHHHHH
CAGYFLHAQLESGSLCPLTMTFASIPVLQREPALFATLRDKLYAREHDARDAPLPQKRSM
HHHHEEEEEECCCCCCCEEHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCE
MVGMGMTEKQGGSDVRSNETHAYPLGAGGRGQAYRLVGHKWFFSAPQCDAHLVLARTAEQ
EECCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCEEECCCCCCCCEEEEEECHHH
AGISCFYVPRFSPDGSKNAVHVQRLKDKLGNRSNASSEVEFLNAYGVMIGDEGRGVPTII
CCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHEEEEEECCCCCCCHHHH
EMANYTRLDCVIGSAALMRAALVQAIHHARHRSAFGRLLADQPLMRNVLADLALESEAAT
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHH
VLFMRLAHAFEEDAAARSPQARGWRRIVTPAAKFWVCKRTLEFTGEAMEVWGGNGYVETG
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEECC
PMARFYREAPVNSIWEGSGNVMCIDVLRAIEREPDAAAALFDEWRDAARHSAPLAGALAE
HHHHHHHHCCCCHHHCCCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
LTRLLSLEPEPREACARRIAQRIALVAQASLLLRDGPYAVAQAFVATRFGHDSSETGRVF
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEE
GTLPATIDHAALVERAFPA
ECCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961409; 7610040; 9278503 [H]