Click here to switch to the map view.

The map label for this gene is ynfM [H]

Identifier: 53717861

GI number: 53717861

Start: 226751

End: 228040

Strand: Reverse

Name: ynfM [H]

Synonym: BPSL0218

Alternate gene names: 53717861

Gene position: 228040-226751 (Counterclockwise)

Preceding gene: 53717864

Following gene: 53717860

Centisome position: 5.6

GC content: 71.86

Gene sequence:

>1290_bases
GTGACTGTACCACCCGGCGCGCCGCGGCCCGCCGCCGCCGGCCGAGCGAACTCGGCGCATGCCGCGCAAGGCGCGTCGCC
CGTCGGCGCCGCCCCGTATCTCGAGCGCGGCTCACGCGGTTACTGGCACGCGAGCGTCGCGCTGCTGTTCGCCGGTTACG
CGACGTTCTCGCTGCTCTATTACGTGCAGCCGCTGTTGCCGGAATTCTCGAAGGCATTCGGCGTGAGCCCGGCGCAGAGC
AGTCTCGCGCTGTCGTTCGCGACGGCCGCGCTCGCCGCCGCCGTGTTCGTCGCCGGCTTCGTCTCCGAAGCGTTGAGCCG
CCACCGGCTGATGACGGCTTCGCTCACCGCTTCGTCGCTGCTCACGCTCGCCGCCGCATTCGCGCCGCACTGGCATCAAC
TGCTGATCCTGCGCGCGCTCACGGGGCTCGCGCTCGGCGGCGTGCCCGCCGTCGCGATGGCGTATCTCGCCGAAGAAGTG
CACCCGGACGGGCTCGGACTCGCGATGGGGCTCTATGTCGGCGGCACCGCGATCGGCGGGATGGCGGGGCGCGTGATCAC
CGGCATTCTCACCGACCTGTTCTCGTGGCGCATCGCGGTGGGCGCGATCGGCGTGCTCGGCCTCGCGTCGATGCTCGCGT
TCCGCATGCTGCTGCCGCCGTCGCGCCATTTCGTGCCGCGCCGCGGCCTGAACCTCGCGCATCACCGCACGTCGCTCGCC
CATCATCTCCGCGGCCAGCGCGAGCTGCCCGTGCTGTTCGCGATGGCGTTCGTGCTGATGGGCAGCTTCGTCACGCTCTA
CAACTACATCGGCTATCGGCTGCTCGCGCCGCCGTATTCGATGGGGCAGGCGACGATCGGCGCGATCTTCGTCGTCTATC
TGGTGGGCGTCGTCGCATCCCCGCTGTCGGGACGGCTCGCCGATACGCTCGGCCGCGGCCGCGTGCTGATCGCGAGCCTC
GCGGTGATGCTCGGGGGCGTCGCGCTAACGCTGCTGCATCCGGTTGCCGCGATCGTCGCGGGCGTCGCATGCGTGACGTT
CGGCTTCTTCGCGGGCCACGCGGTCGCGAGCGGCTGGGTCGGCCGGCTCGCGCAGCACGGCAAAGGCCAGGCGGCCGCGC
TCTATCTACTCGCTTACTATCTTGGCTCGAGCGTCGTCGGCTCGCTCGGCGGACGCTTCTGGAGCACGCTCGGCTGGCCG
GGCGTCGCGGCGCTCGTCGGCGCGCTACTCGCGCTCGGCGTGGTCGCGGCCGCCTGGCTGCGCGCGCGCGAGCGCGGCGG
CGCCGCGTGA

Upstream 100 bases:

>100_bases
CATTCGGAAATGCGGCCAAAAGCCAACGCGTCGTCTGACGAAACGACGCCGAACGGGCAACCGGCGTATCGTTGAGGCTT
GCCTCGCATGGAGAATCAGC

Downstream 100 bases:

>100_bases
TCGCCCGCCGCCTTCGCGGCCGGCGCGGTTGCCGGATCGCGCATCGATGCGTTACCTTTGACGTTCCTGCATTATCGTTC
GCACTTTTCGCGCCCTTCGC

Product: putative transporter protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 428

Protein sequence:

>429_residues
MTVPPGAPRPAAAGRANSAHAAQGASPVGAAPYLERGSRGYWHASVALLFAGYATFSLLYYVQPLLPEFSKAFGVSPAQS
SLALSFATAALAAAVFVAGFVSEALSRHRLMTASLTASSLLTLAAAFAPHWHQLLILRALTGLALGGVPAVAMAYLAEEV
HPDGLGLAMGLYVGGTAIGGMAGRVITGILTDLFSWRIAVGAIGVLGLASMLAFRMLLPPSRHFVPRRGLNLAHHRTSLA
HHLRGQRELPVLFAMAFVLMGSFVTLYNYIGYRLLAPPYSMGQATIGAIFVVYLVGVVASPLSGRLADTLGRGRVLIASL
AVMLGGVALTLLHPVAAIVAGVACVTFGFFAGHAVASGWVGRLAQHGKGQAAALYLLAYYLGSSVVGSLGGRFWSTLGWP
GVAALVGALLALGVVAAAWLRARERGGAA

Sequences:

>Translated_429_residues
MTVPPGAPRPAAAGRANSAHAAQGASPVGAAPYLERGSRGYWHASVALLFAGYATFSLLYYVQPLLPEFSKAFGVSPAQS
SLALSFATAALAAAVFVAGFVSEALSRHRLMTASLTASSLLTLAAAFAPHWHQLLILRALTGLALGGVPAVAMAYLAEEV
HPDGLGLAMGLYVGGTAIGGMAGRVITGILTDLFSWRIAVGAIGVLGLASMLAFRMLLPPSRHFVPRRGLNLAHHRTSLA
HHLRGQRELPVLFAMAFVLMGSFVTLYNYIGYRLLAPPYSMGQATIGAIFVVYLVGVVASPLSGRLADTLGRGRVLIASL
AVMLGGVALTLLHPVAAIVAGVACVTFGFFAGHAVASGWVGRLAQHGKGQAAALYLLAYYLGSSVVGSLGGRFWSTLGWP
GVAALVGALLALGVVAAAWLRARERGGAA
>Mature_428_residues
TVPPGAPRPAAAGRANSAHAAQGASPVGAAPYLERGSRGYWHASVALLFAGYATFSLLYYVQPLLPEFSKAFGVSPAQSS
LALSFATAALAAAVFVAGFVSEALSRHRLMTASLTASSLLTLAAAFAPHWHQLLILRALTGLALGGVPAVAMAYLAEEVH
PDGLGLAMGLYVGGTAIGGMAGRVITGILTDLFSWRIAVGAIGVLGLASMLAFRMLLPPSRHFVPRRGLNLAHHRTSLAH
HLRGQRELPVLFAMAFVLMGSFVTLYNYIGYRLLAPPYSMGQATIGAIFVVYLVGVVASPLSGRLADTLGRGRVLIASLA
VMLGGVALTLLHPVAAIVAGVACVTFGFFAGHAVASGWVGRLAQHGKGQAAALYLLAYYLGSSVVGSLGGRFWSTLGWPG
VAALVGALLALGVVAAAWLRARERGGAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787880, Length=391, Percent_Identity=46.5473145780051, Blast_Score=342, Evalue=3e-95,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196
- InterPro:   IPR005829 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 44199; Mature: 44067

Theoretical pI: Translated: 10.95; Mature: 10.95

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHCCCCC
>Mature Secondary Structure 
TVPPGAPRPAAAGRANSAHAAQGASPVGAAPYLERGSRGYWHASVALLFAGYATFSLLY
CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
YVQPLLPEFSKAFGVSPAQSSLALSFATAALAAAVFVAGFVSEALSRHRLMTASLTASSL
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTLAAAFAPHWHQLLILRALTGLALGGVPAVAMAYLAEEVHPDGLGLAMGLYVGGTAIGG
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
MAGRVITGILTDLFSWRIAVGAIGVLGLASMLAFRMLLPPSRHFVPRRGLNLAHHRTSLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
HHLRGQRELPVLFAMAFVLMGSFVTLYNYIGYRLLAPPYSMGQATIGAIFVVYLVGVVAS
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
PLSGRLADTLGRGRVLIASLAVMLGGVALTLLHPVAAIVAGVACVTFGFFAGHAVASGWV
CCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRLAQHGKGQAAALYLLAYYLGSSVVGSLGGRFWSTLGWPGVAALVGALLALGVVAAAWL
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
RARERGGAA
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]