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The map label for this gene is ybeY [C]

Identifier: 229269498

GI number: 229269498

Start: 764729

End: 765541

Strand: Reverse

Name: ybeY [C]

Synonym: BPSL0672

Alternate gene names: 229269498

Gene position: 765541-764729 (Counterclockwise)

Preceding gene: 53718316

Following gene: 53718314

Centisome position: 18.79

GC content: 67.65

Gene sequence:

>813_bases
ATGAAATCGTCCCGTTCCTCCAAGCCCGCGCGCGCCGAAGCGGCGCAACCCGCGTCTCCCCGCCTGTCGCTGTTCGACGC
GAAAGGCAAAGTCAAGACGGTCGAAGCCCAGGCGCTGCGCATCGACTTCGCCGATGGCCGCAGCCTGATGTTCGACCTGT
CCGGCAGTTCGGGCGACGCGGCCGTCGCGATCGTCGCGCAGCACGCGGACCCGTCGCTGCGCGCGACGATCACGCTGCGC
CCCGAGCACTACGATAGCGTGACGGTCGAGGTCGGCGCCGACGAGAACCCGGACTTCGCGCACGACGAAACAGACGGCGC
TGGCGACGAGAGCGACGACGAAGACGCGCAGGGTCGCGATCCCGAGCTCGACCTCGCGGTGCAGTACGGCGACGAGATCG
GCGATGCGCAGCGCAAGTCGCTGCCCAAGCGCAAGGTGATCGCCGAATGGCTCGAGCCCGCGATCTTCTCCGACGCGCAG
TTCACCGTGCGCTTCGTCGGCGCCGACGAGGGCCGCGCGCTCAATCATAGCTACCGGCACAAGGACTACGCGACGAACGT
GCTGACGTTCGCGTACGGCGAGGAGCCGGACGGCGTGACGGTCGCGGATCTCGTGCTGTGCTGCCCCGTCGTCGAAAAGG
AAGCGCGCGAGCAGGGCAAGACGCTCGTCGCGCATTACGCGCATCTGCTCGTGCACGGCGCGCTGCACGCGCAGGGCTAC
GACCACGAACGCGGCGAAGAGGACGCAGCCGAGATGGAAGCGCTCGAAATCGACATCCTCGCGAAGCTCGGCTTCCCGAA
TCCATACCGCTGA

Upstream 100 bases:

>100_bases
CGCGGCGGCCCCTCCTCGCCCGCGCCGCCCCGCGAAACGCCCTCCCGGACGCTCGTCCGTTTGGTGTATCCTCAACCGCG
TTCAAACCGACGTCAGCGTG

Downstream 100 bases:

>100_bases
TTCGCGCCGCGCCGCCCGCCGTGAGCCGCCCCGCCCCCGCCCGCCGCGCCTACCCGCCATCGCTCGGCGAAGCGCGCTAC
CTGAGCGACGCCGAGCTCGC

Product: unkown domain/putative metalloprotease fusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MKSSRSSKPARAEAAQPASPRLSLFDAKGKVKTVEAQALRIDFADGRSLMFDLSGSSGDAAVAIVAQHADPSLRATITLR
PEHYDSVTVEVGADENPDFAHDETDGAGDESDDEDAQGRDPELDLAVQYGDEIGDAQRKSLPKRKVIAEWLEPAIFSDAQ
FTVRFVGADEGRALNHSYRHKDYATNVLTFAYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAHLLVHGALHAQGY
DHERGEEDAAEMEALEIDILAKLGFPNPYR

Sequences:

>Translated_270_residues
MKSSRSSKPARAEAAQPASPRLSLFDAKGKVKTVEAQALRIDFADGRSLMFDLSGSSGDAAVAIVAQHADPSLRATITLR
PEHYDSVTVEVGADENPDFAHDETDGAGDESDDEDAQGRDPELDLAVQYGDEIGDAQRKSLPKRKVIAEWLEPAIFSDAQ
FTVRFVGADEGRALNHSYRHKDYATNVLTFAYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAHLLVHGALHAQGY
DHERGEEDAAEMEALEIDILAKLGFPNPYR
>Mature_270_residues
MKSSRSSKPARAEAAQPASPRLSLFDAKGKVKTVEAQALRIDFADGRSLMFDLSGSSGDAAVAIVAQHADPSLRATITLR
PEHYDSVTVEVGADENPDFAHDETDGAGDESDDEDAQGRDPELDLAVQYGDEIGDAQRKSLPKRKVIAEWLEPAIFSDAQ
FTVRFVGADEGRALNHSYRHKDYATNVLTFAYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAHLLVHGALHAQGY
DHERGEEDAAEMEALEIDILAKLGFPNPYR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=135, Percent_Identity=46.6666666666667, Blast_Score=103, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 29389; Mature: 29389

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSSRSSKPARAEAAQPASPRLSLFDAKGKVKTVEAQALRIDFADGRSLMFDLSGSSGDA
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEEEEEEECCCCEEEEEECCCCCCE
AVAIVAQHADPSLRATITLRPEHYDSVTVEVGADENPDFAHDETDGAGDESDDEDAQGRD
EEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PELDLAVQYGDEIGDAQRKSLPKRKVIAEWLEPAIFSDAQFTVRFVGADEGRALNHSYRH
CCEEEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHC
KDYATNVLTFAYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAHLLVHGALHAQGY
CHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DHERGEEDAAEMEALEIDILAKLGFPNPYR
CCCCCCHHHHHHHHHEEEEEEECCCCCCCC
>Mature Secondary Structure
MKSSRSSKPARAEAAQPASPRLSLFDAKGKVKTVEAQALRIDFADGRSLMFDLSGSSGDA
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEEEEEEECCCCEEEEEECCCCCCE
AVAIVAQHADPSLRATITLRPEHYDSVTVEVGADENPDFAHDETDGAGDESDDEDAQGRD
EEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PELDLAVQYGDEIGDAQRKSLPKRKVIAEWLEPAIFSDAQFTVRFVGADEGRALNHSYRH
CCEEEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHC
KDYATNVLTFAYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAHLLVHGALHAQGY
CHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DHERGEEDAAEMEALEIDILAKLGFPNPYR
CCCCCCHHHHHHHHHEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA