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The map label for this gene is spoIVCA [H]

Identifier: 52787999

GI number: 52787999

Start: 4174019

End: 4175263

Strand: Direct

Name: spoIVCA [H]

Synonym: BLi04323

Alternate gene names: 52787999

Gene position: 4174019-4175263 (Clockwise)

Preceding gene: 52787998

Following gene: 52788014

Centisome position: 98.85

GC content: 35.9

Gene sequence:

>1245_bases
ATGCACGAAATAAAACGTGTCGCAATTTACTGTAGAGTTTCTACCGAAGAGCAGGCAACGGAAGGATACAGCATATCTGC
CCAATTACAAACTTTACGTCAATATACTCAGTTATATGGTTGGGAGATTGCAGAGGAATATGTAGATGAGGGAATAAGTG
GAAAGAACATTAGCGGTCGCCCTGCAATGCAAAAACTTATTTCAGATGTTGAAAAGGATAAATTTCAAGCTGTTCTTGTT
TGGAAGATCTCACGCCTATCACGAAATATGTTAGATACTCTCACTCTATTAGACAAATTCGAAGATTATGGAGTAAAGTT
CATCTCTTACTCTGAAAACTTTGATACAGGCAGTCCAATTGGTCGTTTAGTTGTTCAACTAATGGCTTCCATTGCAGAAA
TGGAGCGTAATACGTTATCTGAGAACGTTAAGCTCGGAATGAAACAGAGAGCATTAGAAGGTTCATGGAATGGAGGCGTT
GTATTTGGCTACGATACAATTGAAAAAGAGCTTGTGATCAACAAAAAGGAAGCTGAGATTGTACAACAAATCTATCAACT
ATATGCCAATGGTAAAGGCTTAAAGTCAATCGCAAACTACTTAAATAAAGCAGGTTACAGAACTAAACGGAATTGTTATT
TTTCGATAAACGGTGTAGCTCAAATCTTAGACAATGTTATCTATAACGGGAAGATCAGTTGGTTAAAAGTTGAAAATTGG
GATACAAAACGGAGGAGAGGGAAAAATCCAAATCCTATCCTTGTAGAAGGACAGCATGAAGCCATTATTTCCGATGAATT
ATGGAGTATGGTACAAGCAAGGCGGAAAAGTAAATCATTTAAACAAAGGCAATCTAATGAACCATTTTTACTTAGCAGTC
TTTTACGTTGCCCCGATTGTGGTCAAGGTATGGTTCCTGCCATTACAACAAATAAACGAAAGGATGGAACAAAGAAGAAA
TATCGTTATTATGTTTGCTCTAACTTTCATAACAAAGGTTCATCTGCATGTAGAGCAAATTCAATAAAAGCATATGATGC
AGAATACGAAGTAATTAATAAGATTGAGAAGATCCTTTCCAACCAAAATCAGTTATTCTCTAAACTTCAATCTATAAATA
CTACTTCGATTGAATCTTTAAACCAACTCAATAGTGAATTGAAACAATTAGAAAATCGCCTATCAGAAATACAAGAGTAC
AGAATCGTTACTTGGAAGCATTTGAGCAAAAGACCTTACCAATAG

Upstream 100 bases:

>100_bases
TTTGATTTAAAATATTTGAAATCAATTGAACTAAGAGAAGGGGAACATCTTTTCTCTTTTTTGTGTTTCATATTATAATT
ACAAGGAAGGGAGGATTATT

Downstream 100 bases:

>100_bases
CAATCTTGCAAGAACGATTACAGCATGTCTCTAAAGAAAAAGCAGAGTTAGAACAAAGGCACAATGAATCACTGGGCAAT
TAAGCTCGAACGATGCAAAA

Product: SpoIVCA

Products: NA

Alternate protein names: Stage IV sporulation protein CA [H]

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MHEIKRVAIYCRVSTEEQATEGYSISAQLQTLRQYTQLYGWEIAEEYVDEGISGKNISGRPAMQKLISDVEKDKFQAVLV
WKISRLSRNMLDTLTLLDKFEDYGVKFISYSENFDTGSPIGRLVVQLMASIAEMERNTLSENVKLGMKQRALEGSWNGGV
VFGYDTIEKELVINKKEAEIVQQIYQLYANGKGLKSIANYLNKAGYRTKRNCYFSINGVAQILDNVIYNGKISWLKVENW
DTKRRRGKNPNPILVEGQHEAIISDELWSMVQARRKSKSFKQRQSNEPFLLSSLLRCPDCGQGMVPAITTNKRKDGTKKK
YRYYVCSNFHNKGSSACRANSIKAYDAEYEVINKIEKILSNQNQLFSKLQSINTTSIESLNQLNSELKQLENRLSEIQEY
RIVTWKHLSKRPYQ

Sequences:

>Translated_414_residues
MHEIKRVAIYCRVSTEEQATEGYSISAQLQTLRQYTQLYGWEIAEEYVDEGISGKNISGRPAMQKLISDVEKDKFQAVLV
WKISRLSRNMLDTLTLLDKFEDYGVKFISYSENFDTGSPIGRLVVQLMASIAEMERNTLSENVKLGMKQRALEGSWNGGV
VFGYDTIEKELVINKKEAEIVQQIYQLYANGKGLKSIANYLNKAGYRTKRNCYFSINGVAQILDNVIYNGKISWLKVENW
DTKRRRGKNPNPILVEGQHEAIISDELWSMVQARRKSKSFKQRQSNEPFLLSSLLRCPDCGQGMVPAITTNKRKDGTKKK
YRYYVCSNFHNKGSSACRANSIKAYDAEYEVINKIEKILSNQNQLFSKLQSINTTSIESLNQLNSELKQLENRLSEIQEY
RIVTWKHLSKRPYQ
>Mature_414_residues
MHEIKRVAIYCRVSTEEQATEGYSISAQLQTLRQYTQLYGWEIAEEYVDEGISGKNISGRPAMQKLISDVEKDKFQAVLV
WKISRLSRNMLDTLTLLDKFEDYGVKFISYSENFDTGSPIGRLVVQLMASIAEMERNTLSENVKLGMKQRALEGSWNGGV
VFGYDTIEKELVINKKEAEIVQQIYQLYANGKGLKSIANYLNKAGYRTKRNCYFSINGVAQILDNVIYNGKISWLKVENW
DTKRRRGKNPNPILVEGQHEAIISDELWSMVQARRKSKSFKQRQSNEPFLLSSLLRCPDCGQGMVPAITTNKRKDGTKKK
YRYYVCSNFHNKGSSACRANSIKAYDAEYEVINKIEKILSNQNQLFSKLQSINTTSIESLNQLNSELKQLENRLSEIQEY
RIVTWKHLSKRPYQ

Specific function: Putative site-specific recombinase having a very important role in sporulation. It probably plays a role in the recombination of spoIIIC and spoIVCB to form sigma K factor [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 recombinase domain [H]

Homologues:

Organism=Escherichia coli, GI1787404, Length=149, Percent_Identity=32.2147651006711, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011109
- InterPro:   IPR006118
- InterPro:   IPR006119 [H]

Pfam domain/function: PF07508 Recombinase; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 47651; Mature: 47651

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS00397 RECOMBINASES_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEIKRVAIYCRVSTEEQATEGYSISAQLQTLRQYTQLYGWEIAEEYVDEGISGKNISGR
CCCCEEEEEEEEECCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PAMQKLISDVEKDKFQAVLVWKISRLSRNMLDTLTLLDKFEDYGVKFISYSENFDTGSPI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHH
GRLVVQLMASIAEMERNTLSENVKLGMKQRALEGSWNGGVVFGYDTIEKELVINKKEAEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCHHHHH
VQQIYQLYANGKGLKSIANYLNKAGYRTKRNCYFSINGVAQILDNVIYNGKISWLKVENW
HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHCCCEEEEEECCC
DTKRRRGKNPNPILVEGQHEAIISDELWSMVQARRKSKSFKQRQSNEPFLLSSLLRCPDC
CHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCC
GQGMVPAITTNKRKDGTKKKYRYYVCSNFHNKGSSACRANSIKAYDAEYEVINKIEKILS
CCCCCCCEECCCCCCCCHHHEEEEEECCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHC
NQNQLFSKLQSINTTSIESLNQLNSELKQLENRLSEIQEYRIVTWKHLSKRPYQ
CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MHEIKRVAIYCRVSTEEQATEGYSISAQLQTLRQYTQLYGWEIAEEYVDEGISGKNISGR
CCCCEEEEEEEEECCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PAMQKLISDVEKDKFQAVLVWKISRLSRNMLDTLTLLDKFEDYGVKFISYSENFDTGSPI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHH
GRLVVQLMASIAEMERNTLSENVKLGMKQRALEGSWNGGVVFGYDTIEKELVINKKEAEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCHHHHH
VQQIYQLYANGKGLKSIANYLNKAGYRTKRNCYFSINGVAQILDNVIYNGKISWLKVENW
HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHCCCEEEEEECCC
DTKRRRGKNPNPILVEGQHEAIISDELWSMVQARRKSKSFKQRQSNEPFLLSSLLRCPDC
CHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCC
GQGMVPAITTNKRKDGTKKKYRYYVCSNFHNKGSSACRANSIKAYDAEYEVINKIEKILS
CCCCCCCEECCCCCCCCHHHEEEEEECCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHC
NQNQLFSKLQSINTTSIESLNQLNSELKQLENRLSEIQEYRIVTWKHLSKRPYQ
CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2105293; 7704261; 8969508; 9384377 [H]