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The map label for this gene is yvfU [H]

Identifier: 52787980

GI number: 52787980

Start: 4150258

End: 4150860

Strand: Direct

Name: yvfU [H]

Synonym: BLi04304

Alternate gene names: 52787980

Gene position: 4150258-4150860 (Clockwise)

Preceding gene: 52787979

Following gene: 52787985

Centisome position: 98.29

GC content: 50.91

Gene sequence:

>603_bases
ATGATTCGTTTATTTATTGCCGAAGACCAAAGAATGCTGTTAAGCGCGCTGGGATCCTTGCTTGATCTTGAAGAAGACAT
GGAAGTGATCGGCCAGGCGACAAACGGCGAAGAAGCGCTCACCGCCATTCTGAAGCTAGAACCGGACGTCTGCCTCATGG
ATATCGAAATGCCGGTCAAAAGCGGACTGGAAGTGGCCGAAGAGCTCGCAAAGCAAGGCGCAAAAACGAAAATCATCATC
CTAACGACGTTTGCGCGTCCCGGCTACTTCGAACGCGCCGTCAAAAGCAATGTCCACGGCTACCTGCTCAAGGACGGGGA
AATCGACGATCTCGCAGACGCCATCCGAAAATGCACGGAAGGCAAAAGAACCTTTAGTCCGGAACTTACCTTCAACGCTG
TCCGCGAAACAAACCCGCTCACCGAACGCGAACAGGACATCTTGCGACTGGCATATATCGGAAAGACGACAAAAGAAATT
TCTGAGGAGCTTTTCTTGTCGTCAGGGACCGTCCGGAATTATATTTCTGAGATTATGCAGAAGCTGGATGCGAAAAACCG
GATGGAAGCGGCAAGGATTGCGGAGGGGAAAGGATGGATTTGA

Upstream 100 bases:

>100_bases
CATTAATCGACGGCGCTCTCGACGTTTCAACCCATGACGGCACAGTTTTAAGCATCGCCGTTCCAAATGTAAAGAAAGCT
GAAGGAAAGGAAGCAATCCA

Downstream 100 bases:

>100_bases
GTGGGGTCTTGAGATAAGCAGCCATCATGGTACAATGGTATTTTAGGAGCTTTGACATTGGCCTTATAGCTTATCAACTA
ACTCCTTTTAACATTCACAC

Product: YvfU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MIRLFIAEDQRMLLSALGSLLDLEEDMEVIGQATNGEEALTAILKLEPDVCLMDIEMPVKSGLEVAEELAKQGAKTKIII
LTTFARPGYFERAVKSNVHGYLLKDGEIDDLADAIRKCTEGKRTFSPELTFNAVRETNPLTEREQDILRLAYIGKTTKEI
SEELFLSSGTVRNYISEIMQKLDAKNRMEAARIAEGKGWI

Sequences:

>Translated_200_residues
MIRLFIAEDQRMLLSALGSLLDLEEDMEVIGQATNGEEALTAILKLEPDVCLMDIEMPVKSGLEVAEELAKQGAKTKIII
LTTFARPGYFERAVKSNVHGYLLKDGEIDDLADAIRKCTEGKRTFSPELTFNAVRETNPLTEREQDILRLAYIGKTTKEI
SEELFLSSGTVRNYISEIMQKLDAKNRMEAARIAEGKGWI
>Mature_200_residues
MIRLFIAEDQRMLLSALGSLLDLEEDMEVIGQATNGEEALTAILKLEPDVCLMDIEMPVKSGLEVAEELAKQGAKTKIII
LTTFARPGYFERAVKSNVHGYLLKDGEIDDLADAIRKCTEGKRTFSPELTFNAVRETNPLTEREQDILRLAYIGKTTKEI
SEELFLSSGTVRNYISEIMQKLDAKNRMEAARIAEGKGWI

Specific function: Member of the two-component regulatory system yvfT/yvfU [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1790102, Length=193, Percent_Identity=32.6424870466321, Blast_Score=98, Evalue=3e-22,
Organism=Escherichia coli, GI1788521, Length=199, Percent_Identity=31.1557788944724, Blast_Score=89, Evalue=1e-19,
Organism=Escherichia coli, GI1788222, Length=208, Percent_Identity=28.3653846153846, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1788712, Length=196, Percent_Identity=25.5102040816327, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI1787473, Length=199, Percent_Identity=30.6532663316583, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786747, Length=156, Percent_Identity=28.8461538461538, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI87082052, Length=104, Percent_Identity=34.6153846153846, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22398; Mature: 22398

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLFIAEDQRMLLSALGSLLDLEEDMEVIGQATNGEEALTAILKLEPDVCLMDIEMPVK
CEEEEEECCHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEECCCHH
SGLEVAEELAKQGAKTKIIILTTFARPGYFERAVKSNVHGYLLKDGEIDDLADAIRKCTE
HHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHC
GKRTFSPELTFNAVRETNPLTEREQDILRLAYIGKTTKEISEELFLSSGTVRNYISEIMQ
CCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHH
KLDAKNRMEAARIAEGKGWI
HHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIRLFIAEDQRMLLSALGSLLDLEEDMEVIGQATNGEEALTAILKLEPDVCLMDIEMPVK
CEEEEEECCHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEECCCHH
SGLEVAEELAKQGAKTKIIILTTFARPGYFERAVKSNVHGYLLKDGEIDDLADAIRKCTE
HHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHC
GKRTFSPELTFNAVRETNPLTEREQDILRLAYIGKTTKEISEELFLSSGTVRNYISEIMQ
CCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHH
KLDAKNRMEAARIAEGKGWI
HHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]