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The map label for this gene is 52787806

Identifier: 52787806

GI number: 52787806

Start: 3953387

End: 3954412

Strand: Direct

Name: 52787806

Synonym: BLi04129

Alternate gene names: NA

Gene position: 3953387-3954412 (Clockwise)

Preceding gene: 52787805

Following gene: 52787812

Centisome position: 93.62

GC content: 44.05

Gene sequence:

>1026_bases
ATGAAGAAATTAATCAGCATCATCTTTATCTTTGTATTAGGGGTTGTCGGGTCATTGACAGCGGCGGTTTCGGCAGAAGC
AGCTTCTGCCTTAAACTCGGGCAAAGTAAATCCGCTTGCCGACTTCAGCTTAAAAGGCTTTGCCGCACTAAACGGCGGAA
CAACGGGCGGAGAAGGCGGTCAGACGGTAACCGTAACAACGGGAGATCAGCTGATTGCGGCATTAAAAAATAAGAATGCA
AATACGCCTTTAAAAATTTATGTCAACGGCACCATTACAACATCAAATACATCCGCATCAAAGATTGACGTCAAAGACGT
GTCAAACGTATCGATTGTCGGATCAGGGACCAAAGGGGAACTCAAAGGGATCGGCATCAAAATATGGCGGGCCAACAACA
TCATCATCCGCAACTTGAAAATTCACGAGGTCGCCTCAGGCGATAAAGACGCGATCGGCATTGAAGGCCCTTCTAAAAAC
ATTTGGGTTGATCATAATGAGCTTTACCACAGCCTGAACGTTGACAAAGATTACTATGACGGATTATTTGACGTCAAAAG
AGATGCGGAATATATTACATTCTCTTGGAACTATGTGCACGATGGATGGAAATCAATGCTGATGGGTTCATCGGACAGCG
ATAATTACAACAGGACGATTACATTCCATCATAACTGGTTTGAGAATCTGAATTCGCGTGTGCCGTCATTCCGTTTCGGA
GAAGGCCATATTTACAACAACTATTTCAATAAAATCATCGACAGCGGAATTAATTCGAGGATGGGCGCGCGCATCAGAAT
TGAGAACAACCTCTTTGAAAACGCCAAAGATCCGATTGTCTCTTGGTACAGCAGTTCACCGGGCTATTGGCATGTATCCA
ACAACAAATTTGTAAACTCTAGGGGCAGTATGCCGACTACCTCTACTACAACCTATAATCCGCCATACAGCTACTCACTC
GACAATGTCGACAATGTAAAATCAATCGTCAAGCAAAATGCCGGAGTCGGCAAAATCAATCCATAA

Upstream 100 bases:

>100_bases
AAGGGAGGGATGATCGGTGCCCACCATTCAGTATCCGCCGTAATTGTAAGCGCTTCCCATTCAGCGTTGGCATCAAAAAA
GAAACAATAGGAGGAATATA

Downstream 100 bases:

>100_bases
GCTTTGAGGTGAAACGTCCGGGGCATTCCGGGCGTTTCACTTATTTCCATCCTCATACGCTTTCCATACCGTTGGCAGCA
GATCGGAAAGTTCATGCGCA

Product: hypothetical protein

Products: NA

Alternate protein names: Exopolygalacturonate lyase; Pectate lyase

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MKKLISIIFIFVLGVVGSLTAAVSAEAASALNSGKVNPLADFSLKGFAALNGGTTGGEGGQTVTVTTGDQLIAALKNKNA
NTPLKIYVNGTITTSNTSASKIDVKDVSNVSIVGSGTKGELKGIGIKIWRANNIIIRNLKIHEVASGDKDAIGIEGPSKN
IWVDHNELYHSLNVDKDYYDGLFDVKRDAEYITFSWNYVHDGWKSMLMGSSDSDNYNRTITFHHNWFENLNSRVPSFRFG
EGHIYNNYFNKIIDSGINSRMGARIRIENNLFENAKDPIVSWYSSSPGYWHVSNNKFVNSRGSMPTTSTTTYNPPYSYSL
DNVDNVKSIVKQNAGVGKINP

Sequences:

>Translated_341_residues
MKKLISIIFIFVLGVVGSLTAAVSAEAASALNSGKVNPLADFSLKGFAALNGGTTGGEGGQTVTVTTGDQLIAALKNKNA
NTPLKIYVNGTITTSNTSASKIDVKDVSNVSIVGSGTKGELKGIGIKIWRANNIIIRNLKIHEVASGDKDAIGIEGPSKN
IWVDHNELYHSLNVDKDYYDGLFDVKRDAEYITFSWNYVHDGWKSMLMGSSDSDNYNRTITFHHNWFENLNSRVPSFRFG
EGHIYNNYFNKIIDSGINSRMGARIRIENNLFENAKDPIVSWYSSSPGYWHVSNNKFVNSRGSMPTTSTTTYNPPYSYSL
DNVDNVKSIVKQNAGVGKINP
>Mature_341_residues
MKKLISIIFIFVLGVVGSLTAAVSAEAASALNSGKVNPLADFSLKGFAALNGGTTGGEGGQTVTVTTGDQLIAALKNKNA
NTPLKIYVNGTITTSNTSASKIDVKDVSNVSIVGSGTKGELKGIGIKIWRANNIIIRNLKIHEVASGDKDAIGIEGPSKN
IWVDHNELYHSLNVDKDYYDGLFDVKRDAEYITFSWNYVHDGWKSMLMGSSDSDNYNRTITFHHNWFENLNSRVPSFRFG
EGHIYNNYFNKIIDSGINSRMGARIRIENNLFENAKDPIVSWYSSSPGYWHVSNNKFVNSRGSMPTTSTTTYNPPYSYSL
DNVDNVKSIVKQNAGVGKINP

Specific function: Cleaves unsaturated oligo-galacturonides from pectin. The major product is trigalacturonate; digalacturonate and tetragalacturonate are also produced. Activity on methylated pectins decreases with an increasing degree of methylation

COG id: COG3866

COG function: function code G; Pectate lyase

Gene ontology:

Cell location: Secreted (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 PbH1 repeats

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PTLY_BACLD (Q65DC2)

Other databases:

- EMBL:   CP000002
- EMBL:   AE017333
- RefSeq:   YP_081206.1
- RefSeq:   YP_093635.1
- ProteinModelPortal:   Q65DC2
- STRING:   Q65DC2
- EnsemblBacteria:   EBBACT00000055787
- EnsemblBacteria:   EBBACT00000058514
- GeneID:   3028316
- GeneID:   3098687
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi04129
- KEGG:   bli:BL00947
- NMPDR:   fig|279010.5.peg.3938
- eggNOG:   COG3866
- GeneTree:   EBGT00050000000877
- HOGENOM:   HBG465545
- OMA:   LFDVKRD
- ProtClustDB:   CLSK873712
- BioCyc:   BLIC279010-1:BLI04129-MONOMER
- BioCyc:   BLIC279010:BL00947-MONOMER
- InterPro:   IPR002022
- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050
- Gene3D:   G3DSA:2.160.20.10
- SMART:   SM00656
- SMART:   SM00710

Pfam domain/function: PF00544 Pec_lyase_C; SSF51126 Pectin_lyas_like

EC number: =4.2.2.22

Molecular weight: Translated: 37365; Mature: 37365

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: NA

Important sites: ACT_SITE 233-233

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLISIIFIFVLGVVGSLTAAVSAEAASALNSGKVNPLADFSLKGFAALNGGTTGGEGG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCC
QTVTVTTGDQLIAALKNKNANTPLKIYVNGTITTSNTSASKIDVKDVSNVSIVGSGTKGE
CEEEEECCHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCCEEECCCCCCEEEEECCCCCC
LKGIGIKIWRANNIIIRNLKIHEVASGDKDAIGIEGPSKNIWVDHNELYHSLNVDKDYYD
EEEEEEEEEECCCEEEEEEEEEEECCCCCCEEECCCCCCCEEEEHHHHHHCCCCCCHHHC
GLFDVKRDAEYITFSWNYVHDGWKSMLMGSSDSDNYNRTITFHHNWFENLNSRVPSFRFG
CHHEECCCCEEEEEEEEEEHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHCCCCEECC
EGHIYNNYFNKIIDSGINSRMGARIRIENNLFENAKDPIVSWYSSSPGYWHVSNNKFVNS
CCCEEHHHHHHHHHCCCCCCCCCEEEECCCHHCCCCCCEEEEECCCCCEEEECCCEEECC
RGSMPTTSTTTYNPPYSYSLDNVDNVKSIVKQNAGVGKINP
CCCCCCCCCEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKKLISIIFIFVLGVVGSLTAAVSAEAASALNSGKVNPLADFSLKGFAALNGGTTGGEGG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCC
QTVTVTTGDQLIAALKNKNANTPLKIYVNGTITTSNTSASKIDVKDVSNVSIVGSGTKGE
CEEEEECCHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCCEEECCCCCCEEEEECCCCCC
LKGIGIKIWRANNIIIRNLKIHEVASGDKDAIGIEGPSKNIWVDHNELYHSLNVDKDYYD
EEEEEEEEEECCCEEEEEEEEEEECCCCCCEEECCCCCCCEEEEHHHHHHCCCCCCHHHC
GLFDVKRDAEYITFSWNYVHDGWKSMLMGSSDSDNYNRTITFHHNWFENLNSRVPSFRFG
CHHEECCCCEEEEEEEEEEHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHCCCCEECC
EGHIYNNYFNKIIDSGINSRMGARIRIENNLFENAKDPIVSWYSSSPGYWHVSNNKFVNS
CCCEEHHHHHHHHHCCCCCCCCCEEEECCCHHCCCCCCEEEEECCCCCEEEECCCEEECC
RGSMPTTSTTTYNPPYSYSLDNVDNVKSIVKQNAGVGKINP
CCCCCCCCCEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA