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The map label for this gene is ywbI2 [H]

Identifier: 52787731

GI number: 52787731

Start: 3879576

End: 3879902

Strand: Reverse

Name: ywbI2 [H]

Synonym: BLi04054

Alternate gene names: 52787731

Gene position: 3879902-3879576 (Counterclockwise)

Preceding gene: 52787732

Following gene: 52787730

Centisome position: 91.88

GC content: 48.32

Gene sequence:

>327_bases
ATGGACATACGCCACTTAACCTATTTCTTGGAGGTAGCCCGTCTGAAAAGCTTCACAAAAGCCGCTCAGTCATTATACAT
ATCTCAGCCGACGATTTCCAAAATGATTAAAAACCTTGAAGAAGAGCTGGGCATCGAGCTGTTTTACCGGCGCGGCCGGC
AGATCGAGCTGACTGATGCGGGGCAAAGCATGTATGTGCAGGCCCAGGAAATCACCAAGTCATTTCAAAATTTAACTTCT
GAGCTGAACGACTTGATGGACGTCAAAAAAGGGCATGTGAGGATCGGTCTGCCGCCGATGATCGGCTCCGGTTTTTTCCG
AAAGTGA

Upstream 100 bases:

>100_bases
GCGGCGTTTTTTTTATTGTGGCTCTCGCGGGGGTGCAGAAAACAATGAATTTGGTTTAGAATATGAATACACGCAGGAAC
TCTGAAAGGGTGTCAAACAA

Downstream 100 bases:

>100_bases
TAGGGGATTTCAGAGATAAGTATCCGAACGTCACCTTTCAGCTTGTTGAACACGGGTCTGTGAAAGTGCAGGAGGGAGTA
GAGGACGGATCGCTTGATAT

Product: YwbI2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MDIRHLTYFLEVARLKSFTKAAQSLYISQPTISKMIKNLEEELGIELFYRRGRQIELTDAGQSMYVQAQEITKSFQNLTS
ELNDLMDVKKGHVRIGLPPMIGSGFFRK

Sequences:

>Translated_108_residues
MDIRHLTYFLEVARLKSFTKAAQSLYISQPTISKMIKNLEEELGIELFYRRGRQIELTDAGQSMYVQAQEITKSFQNLTS
ELNDLMDVKKGHVRIGLPPMIGSGFFRK
>Mature_108_residues
MDIRHLTYFLEVARLKSFTKAAQSLYISQPTISKMIKNLEEELGIELFYRRGRQIELTDAGQSMYVQAQEITKSFQNLTS
ELNDLMDVKKGHVRIGLPPMIGSGFFRK

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=106, Percent_Identity=43.3962264150943, Blast_Score=90, Evalue=3e-20,
Organism=Escherichia coli, GI1789506, Length=102, Percent_Identity=34.3137254901961, Blast_Score=72, Evalue=1e-14,
Organism=Escherichia coli, GI1790399, Length=103, Percent_Identity=34.9514563106796, Blast_Score=70, Evalue=4e-14,
Organism=Escherichia coli, GI1788297, Length=99, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI1788887, Length=77, Percent_Identity=40.2597402597403, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI1787601, Length=97, Percent_Identity=36.0824742268041, Blast_Score=65, Evalue=9e-13,
Organism=Escherichia coli, GI1787879, Length=96, Percent_Identity=34.375, Blast_Score=63, Evalue=3e-12,
Organism=Escherichia coli, GI48994962, Length=76, Percent_Identity=40.7894736842105, Blast_Score=63, Evalue=4e-12,
Organism=Escherichia coli, GI145693105, Length=98, Percent_Identity=31.6326530612245, Blast_Score=62, Evalue=6e-12,
Organism=Escherichia coli, GI1789173, Length=94, Percent_Identity=38.2978723404255, Blast_Score=62, Evalue=7e-12,
Organism=Escherichia coli, GI1786713, Length=94, Percent_Identity=38.2978723404255, Blast_Score=62, Evalue=8e-12,
Organism=Escherichia coli, GI2367136, Length=105, Percent_Identity=31.4285714285714, Blast_Score=61, Evalue=2e-11,
Organism=Escherichia coli, GI1790208, Length=112, Percent_Identity=32.1428571428571, Blast_Score=60, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 12458; Mature: 12458

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIRHLTYFLEVARLKSFTKAAQSLYISQPTISKMIKNLEEELGIELFYRRGRQIELTDA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHCCCEEEEECC
GQSMYVQAQEITKSFQNLTSELNDLMDVKKGHVRIGLPPMIGSGFFRK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCC
>Mature Secondary Structure
MDIRHLTYFLEVARLKSFTKAAQSLYISQPTISKMIKNLEEELGIELFYRRGRQIELTDA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHCCCEEEEECC
GQSMYVQAQEITKSFQNLTSELNDLMDVKKGHVRIGLPPMIGSGFFRK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]