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The map label for this gene is rsfA [H]

Identifier: 52787663

GI number: 52787663

Start: 3810779

End: 3811564

Strand: Direct

Name: rsfA [H]

Synonym: BLi03985

Alternate gene names: 52787663

Gene position: 3810779-3811564 (Clockwise)

Preceding gene: 52787658

Following gene: 52787664

Centisome position: 90.25

GC content: 46.82

Gene sequence:

>786_bases
ATGAAACAAAGACAAGACGCTTGGTCTGAGGAAAATGATTTACTGCTTGCTGAAACGGTATTGCGGCATGTCAGGGAAGG
GAGCACACAGCTGAACGCCTTCGAGGAAGTCGGAGACAGACTGAACAGGACATCAGCCGCCTGCGGTTTTAGATGGAACG
CAGTTGTCCGCCACCAATACGAAAAAGCATTGCAGCTGGCTAAAAAACAGAGGAAGCAAAGAATGCGCGCCCTCGGAAAC
GGACAGCCGGCGAAAAAACGCTTATTATACAAGCCGCCGGTCGAAACGAATGCTGAACCTCCTGCAGAAAGCGTTGTTGA
GCAGAAGAAAGCAACCGCAGATTCAAGCGAACAGCAGCCGATCGCCAGCGAGCATCTGCCTTATGTTGATGAGAGCTTTA
AAGAAGAGTTAGCTAGTTTATCTCACCTTCTATCGCCAAATCAGCCGCAGGCCGGCCATACAGCCGATACATCGAAAGAC
ATGACGATCGATGATGTGATCCGCTTCCTGCAAAACTATACAGGAAACGAAGAACAAACTGCCGCTTTAAAAATGGAAAA
TGAACGTTTAAAACAGGAAAACGAAGAACTGACGAAGAAAGTTGAAAAGCTTGAAGCGGAAGTCAAAAAGCTGGAAAAAG
ACCAGACAACCATCCAGGAAGACTACGAAACGCTCGTAAAAATTATGAACCGTGCAAGAAAACTAGTTTTATTCGAAGAA
GACGAACACGCTGCGCCCGCCTTCAAAATGGACCGGAACGGCAATTTAGAAAAAATGGCTGAATAG

Upstream 100 bases:

>100_bases
GCGCTAAAAAAATCAGTTCCTATTCTTTTAGCAAACTTGTATAAATATTTTCCAAAATGGACAATCTAATACCAATACTG
ACAATGGGAGTTGAGAAGTG

Downstream 100 bases:

>100_bases
CGCTCTCAGAGGATGCGGCAGAGACGTTCAGGCAGCAAGGACTGACAATGCATACAAACATTTTTCGATACGAGGATACC
CCTTTCTTTAAAAAAGGGGG

Product: RsfA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MKQRQDAWSEENDLLLAETVLRHVREGSTQLNAFEEVGDRLNRTSAACGFRWNAVVRHQYEKALQLAKKQRKQRMRALGN
GQPAKKRLLYKPPVETNAEPPAESVVEQKKATADSSEQQPIASEHLPYVDESFKEELASLSHLLSPNQPQAGHTADTSKD
MTIDDVIRFLQNYTGNEEQTAALKMENERLKQENEELTKKVEKLEAEVKKLEKDQTTIQEDYETLVKIMNRARKLVLFEE
DEHAAPAFKMDRNGNLEKMAE

Sequences:

>Translated_261_residues
MKQRQDAWSEENDLLLAETVLRHVREGSTQLNAFEEVGDRLNRTSAACGFRWNAVVRHQYEKALQLAKKQRKQRMRALGN
GQPAKKRLLYKPPVETNAEPPAESVVEQKKATADSSEQQPIASEHLPYVDESFKEELASLSHLLSPNQPQAGHTADTSKD
MTIDDVIRFLQNYTGNEEQTAALKMENERLKQENEELTKKVEKLEAEVKKLEKDQTTIQEDYETLVKIMNRARKLVLFEE
DEHAAPAFKMDRNGNLEKMAE
>Mature_261_residues
MKQRQDAWSEENDLLLAETVLRHVREGSTQLNAFEEVGDRLNRTSAACGFRWNAVVRHQYEKALQLAKKQRKQRMRALGN
GQPAKKRLLYKPPVETNAEPPAESVVEQKKATADSSEQQPIASEHLPYVDESFKEELASLSHLLSPNQPQAGHTADTSKD
MTIDDVIRFLQNYTGNEEQTAALKMENERLKQENEELTKKVEKLEAEVKKLEKDQTTIQEDYETLVKIMNRARKLVLFEE
DEHAAPAFKMDRNGNLEKMAE

Specific function: Seems to improve the efficiency of sporulation by fine- tuning the expression of genes in the sigma F regulon, particularly the timing of their expression. Negatively regulates spoIIR and its own synthesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Myb-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014243
- InterPro:   IPR017877 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29931; Mature: 29931

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: PS50090 MYB_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQRQDAWSEENDLLLAETVLRHVREGSTQLNAFEEVGDRLNRTSAACGFRWNAVVRHQY
CCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
EKALQLAKKQRKQRMRALGNGQPAKKRLLYKPPVETNAEPPAESVVEQKKATADSSEQQP
HHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
IASEHLPYVDESFKEELASLSHLLSPNQPQAGHTADTSKDMTIDDVIRFLQNYTGNEEQT
CHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHH
AALKMENERLKQENEELTKKVEKLEAEVKKLEKDQTTIQEDYETLVKIMNRARKLVLFEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC
DEHAAPAFKMDRNGNLEKMAE
CCCCCCCEECCCCCCHHHHCC
>Mature Secondary Structure
MKQRQDAWSEENDLLLAETVLRHVREGSTQLNAFEEVGDRLNRTSAACGFRWNAVVRHQY
CCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
EKALQLAKKQRKQRMRALGNGQPAKKRLLYKPPVETNAEPPAESVVEQKKATADSSEQQP
HHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
IASEHLPYVDESFKEELASLSHLLSPNQPQAGHTADTSKDMTIDDVIRFLQNYTGNEEQT
CHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHH
AALKMENERLKQENEELTKKVEKLEAEVKKLEKDQTTIQEDYETLVKIMNRARKLVLFEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC
DEHAAPAFKMDRNGNLEKMAE
CCCCCCCEECCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377; 10629188 [H]