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The map label for this gene is ywkB [H]

Identifier: 52787630

GI number: 52787630

Start: 3775840

End: 3776796

Strand: Reverse

Name: ywkB [H]

Synonym: BLi03952

Alternate gene names: 52787630

Gene position: 3776796-3775840 (Counterclockwise)

Preceding gene: 229312736

Following gene: 52787627

Centisome position: 89.44

GC content: 44.72

Gene sequence:

>957_bases
TTGAGCTTTTTAAATATTTTAATCCTCCTTGCGCCAATATTTTTTGTTATTGCGCTGGGATGGTTTGCGGGTCACTTTGG
AAGCTATGATGCTAAATCAGCAAAAGGGGTAAGTACGCTCGTAACGAAATACGCGCTTCCGGCCCACTTTGTATCAAGCA
TTTTGTCAACGCCAAAAGATAAGTTTTACAGCCAGATTCCGCTTATGATTTCATTGGTAATCGGTATCGTTGGATTTTAC
GTTATTATTTTGCTTCTTTTACGATTTTTGTTTAAATACGATTTAACAGATGCTTCAATGTTCTCATTGAACTCAGCACA
GCCGACATTCGCCTTTATGGGCATTCCTGTATTGGGCAGCCTGTTCGGCATGCAGGAAGTTGCGATTCCAATCGCGATTA
CGGGAATTGTCGTAAATGCGATGCTTGATCCTCTTGCGATCATCGTCGGAACCGTCGGCCGTTCTTCAAAAAAACAAACG
GAAACGACGGACAGCATTTGGAAGGTGACAGGAAAATCAATTTTACACGGTTTGTCTGAACCGCTTGCTTTTGCACCGCT
TGCAAGTATCATTCTTGTGTTATTCGGTCTGCAAATTCCTGAATTGCCGCAGAAAATGCTTGATATGCTCGGAGATACGA
CTTCAGGAATCGCCCTATTCGCAGTCGGGGTGACTGTCGGAATCCGCAAAATTAAATTCAGCATGCCTGCCTTGAGCATC
GCTTTATTAAAAGTCGCTGCTCAGCCTGCTTTAATGTTTGTGATCGCGATGGTCGTCGGCCTTTCTTCTGCCGACATGAC
AAAAGCGGTTCTGCTCGTGGCATTCCCTGGTTCTGCTGTGGCGGCCATGATTGCTACAAACTTTGAAAGCCAGGAAGCGG
AAACGGCATCCGCGTTTGTGATCAGTGCGGTGCTGTCAATTATTTCGCTGCCGATATTGATTGCAATTACAGCTTAA

Upstream 100 bases:

>100_bases
TTGAAAAAAATGGGATCGGCGGCTGTGTAACAGGGCGACCGCGTTTATCAGCCGCCGTTAATACGTCCCTGAAAGGGACA
ACATAGAGGAGGAAACAGCC

Downstream 100 bases:

>100_bases
GTAAGAAAAAAGCTTGCAAGAAGCCGTTTATGGCCTTGCAAGCTTTTTTGCGCTTTAAAAAGAGAAGATCGATTTCAATT
TGCTCTTCGGTTTTTTTTCT

Product: YwkB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MSFLNILILLAPIFFVIALGWFAGHFGSYDAKSAKGVSTLVTKYALPAHFVSSILSTPKDKFYSQIPLMISLVIGIVGFY
VIILLLLRFLFKYDLTDASMFSLNSAQPTFAFMGIPVLGSLFGMQEVAIPIAITGIVVNAMLDPLAIIVGTVGRSSKKQT
ETTDSIWKVTGKSILHGLSEPLAFAPLASIILVLFGLQIPELPQKMLDMLGDTTSGIALFAVGVTVGIRKIKFSMPALSI
ALLKVAAQPALMFVIAMVVGLSSADMTKAVLLVAFPGSAVAAMIATNFESQEAETASAFVISAVLSIISLPILIAITA

Sequences:

>Translated_318_residues
MSFLNILILLAPIFFVIALGWFAGHFGSYDAKSAKGVSTLVTKYALPAHFVSSILSTPKDKFYSQIPLMISLVIGIVGFY
VIILLLLRFLFKYDLTDASMFSLNSAQPTFAFMGIPVLGSLFGMQEVAIPIAITGIVVNAMLDPLAIIVGTVGRSSKKQT
ETTDSIWKVTGKSILHGLSEPLAFAPLASIILVLFGLQIPELPQKMLDMLGDTTSGIALFAVGVTVGIRKIKFSMPALSI
ALLKVAAQPALMFVIAMVVGLSSADMTKAVLLVAFPGSAVAAMIATNFESQEAETASAFVISAVLSIISLPILIAITA
>Mature_317_residues
SFLNILILLAPIFFVIALGWFAGHFGSYDAKSAKGVSTLVTKYALPAHFVSSILSTPKDKFYSQIPLMISLVIGIVGFYV
IILLLLRFLFKYDLTDASMFSLNSAQPTFAFMGIPVLGSLFGMQEVAIPIAITGIVVNAMLDPLAIIVGTVGRSSKKQTE
TTDSIWKVTGKSILHGLSEPLAFAPLASIILVLFGLQIPELPQKMLDMLGDTTSGIALFAVGVTVGIRKIKFSMPALSIA
LLKVAAQPALMFVIAMVVGLSSADMTKAVLLVAFPGSAVAAMIATNFESQEAETASAFVISAVLSIISLPILIAITA

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

Organism=Escherichia coli, GI1788715, Length=312, Percent_Identity=26.6025641025641, Blast_Score=106, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776
- InterPro:   IPR014024 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 33649; Mature: 33518

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFLNILILLAPIFFVIALGWFAGHFGSYDAKSAKGVSTLVTKYALPAHFVSSILSTPKD
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
KFYSQIPLMISLVIGIVGFYVIILLLLRFLFKYDLTDASMFSLNSAQPTFAFMGIPVLGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHH
LFGMQEVAIPIAITGIVVNAMLDPLAIIVGTVGRSSKKQTETTDSIWKVTGKSILHGLSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
PLAFAPLASIILVLFGLQIPELPQKMLDMLGDTTSGIALFAVGVTVGIRKIKFSMPALSI
CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHH
ALLKVAAQPALMFVIAMVVGLSSADMTKAVLLVAFPGSAVAAMIATNFESQEAETASAFV
HHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHH
ISAVLSIISLPILIAITA
HHHHHHHHHHHHHHEECC
>Mature Secondary Structure 
SFLNILILLAPIFFVIALGWFAGHFGSYDAKSAKGVSTLVTKYALPAHFVSSILSTPKD
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH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HHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]