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The map label for this gene is atpH

Identifier: 52787607

GI number: 52787607

Start: 3756307

End: 3756861

Strand: Reverse

Name: atpH

Synonym: BLi03929

Alternate gene names: 52787607

Gene position: 3756861-3756307 (Counterclockwise)

Preceding gene: 52787608

Following gene: 52787606

Centisome position: 88.97

GC content: 48.47

Gene sequence:

>555_bases
ATGAGCCAATCAGCTGTCTCCAAACGCTACGCAGCCGCTCTGTTTGACATTGCCCTTGAATCCAAGCTGGTCAATGAAAT
AGAAGAAGAGCTGACCGTCGTTAAGAAGATATTTATTGAGCATAAAGACCTCAATGCCGTTCTGGGTCATCCTAAAGTGC
CCGCTGAAAAGAAAAAGCAGATTTTAAAAGACTCGTTCGGATCCGTTTCGACTGCAGTCTTACATACGCTTTATCTTCTC
GTTGACCGCAGCCGCACGTCAATCGTCCCGGATCTCGCGGACGAATATGTCAAAATGGCGAACCGGTTCCGCGGGACGGA
AGATGCGATCGTATACTCTGTAAAACCGCTCAGCGAAGAGGAAATTTCCTCTTTTTCTCAAGTGTTTGCAAAAGAAGCAG
GCGCCGCTTCACTGCGCGTCAGAAACGAAGTGAATCCGGATCTGATCGGCGGTGTGAAAATCCGCATCGGGAACCGCATT
TATGACGGCAGTGTAAGAGGAAAGCTTGACCGGATAGAACGTCAATTAGCAGGCGAAAATCGAAAGAAGGGGTGA

Upstream 100 bases:

>100_bases
TGTCTGTGATGATCGCTTCTAAAGTAATCGAAAAAGAGCTGGACGAACAAGCCCAGGAAAAATTGATCCAAGACTATCTT
AAAGAAGTAGGAGAAAGCCG

Downstream 100 bases:

>100_bases
AACCTAAGTGAGCATCAAAGCTGAAGAAATTAGCACTCTCATAAAACAGCAAATTGAAAACTATCAGTCTGAAATAGAAG
TTCACGACGTAGGTACGGTA

Product: F0F1 ATP synthase subunit delta

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; F-ATPase subunit delta

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MSQSAVSKRYAAALFDIALESKLVNEIEEELTVVKKIFIEHKDLNAVLGHPKVPAEKKKQILKDSFGSVSTAVLHTLYLL
VDRSRTSIVPDLADEYVKMANRFRGTEDAIVYSVKPLSEEEISSFSQVFAKEAGAASLRVRNEVNPDLIGGVKIRIGNRI
YDGSVRGKLDRIERQLAGENRKKG

Sequences:

>Translated_184_residues
MSQSAVSKRYAAALFDIALESKLVNEIEEELTVVKKIFIEHKDLNAVLGHPKVPAEKKKQILKDSFGSVSTAVLHTLYLL
VDRSRTSIVPDLADEYVKMANRFRGTEDAIVYSVKPLSEEEISSFSQVFAKEAGAASLRVRNEVNPDLIGGVKIRIGNRI
YDGSVRGKLDRIERQLAGENRKKG
>Mature_183_residues
SQSAVSKRYAAALFDIALESKLVNEIEEELTVVKKIFIEHKDLNAVLGHPKVPAEKKKQILKDSFGSVSTAVLHTLYLLV
DRSRTSIVPDLADEYVKMANRFRGTEDAIVYSVKPLSEEEISSFSQVFAKEAGAASLRVRNEVNPDLIGGVKIRIGNRIY
DGSVRGKLDRIERQLAGENRKKG

Specific function: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction

COG id: COG0712

COG function: function code C; F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase delta chain family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPD_BACLD (Q65DX1)

Other databases:

- EMBL:   CP000002
- EMBL:   AE017333
- RefSeq:   YP_081007.1
- RefSeq:   YP_093436.1
- ProteinModelPortal:   Q65DX1
- STRING:   Q65DX1
- EnsemblBacteria:   EBBACT00000057528
- EnsemblBacteria:   EBBACT00000062015
- GeneID:   3027838
- GeneID:   3101255
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi03929
- KEGG:   bli:BL03997
- NMPDR:   fig|279010.5.peg.4014
- eggNOG:   COG0712
- GeneTree:   EBGT00050000001610
- HOGENOM:   HBG668108
- OMA:   AYDEEAG
- ProtClustDB:   PRK05758
- BioCyc:   BLIC279010-1:BLI03929-MONOMER
- BioCyc:   BLIC279010:BL03997-MONOMER
- HAMAP:   MF_01416
- InterPro:   IPR000711
- InterPro:   IPR020781
- Gene3D:   G3DSA:1.10.520.20
- PANTHER:   PTHR11910
- PRINTS:   PR00125
- TIGRFAMs:   TIGR01145

Pfam domain/function: PF00213 OSCP; SSF47928 ATPsynt_OSCP

EC number: 3.6.3.14

Molecular weight: Translated: 20457; Mature: 20326

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQSAVSKRYAAALFDIALESKLVNEIEEELTVVKKIFIEHKDLNAVLGHPKVPAEKKKQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHH
ILKDSFGSVSTAVLHTLYLLVDRSRTSIVPDLADEYVKMANRFRGTEDAIVYSVKPLSEE
HHHHCCCHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHH
EISSFSQVFAKEAGAASLRVRNEVNPDLIGGVKIRIGNRIYDGSVRGKLDRIERQLAGEN
HHHHHHHHHHHHCCCHHEEECCCCCCCCCCCEEEEECCEEECCCHHHHHHHHHHHHHCCC
RKKG
CCCC
>Mature Secondary Structure 
SQSAVSKRYAAALFDIALESKLVNEIEEELTVVKKIFIEHKDLNAVLGHPKVPAEKKKQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHH
ILKDSFGSVSTAVLHTLYLLVDRSRTSIVPDLADEYVKMANRFRGTEDAIVYSVKPLSEE
HHHHCCCHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHH
EISSFSQVFAKEAGAASLRVRNEVNPDLIGGVKIRIGNRIYDGSVRGKLDRIERQLAGEN
HHHHHHHHHHHHCCCHHEEECCCCCCCCCCCEEEEECCEEECCCHHHHHHHHHHHHHCCC
RKKG
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA