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The map label for this gene is ybbB [H]

Identifier: 52787585

GI number: 52787585

Start: 3734086

End: 3735681

Strand: Reverse

Name: ybbB [H]

Synonym: BLi03907

Alternate gene names: 52787585

Gene position: 3735681-3734086 (Counterclockwise)

Preceding gene: 52787587

Following gene: 52787584

Centisome position: 88.47

GC content: 49.87

Gene sequence:

>1596_bases
ATGAAATCTTCTTATTTCTATCGTCTCTTGCAAATTGATCATATAAGAAAGCCCGGCGATCTTCCGGATGAACAGCAGCT
CGCAGACTCTTTCGTTTTGATCTTTCATTTGAAGGGTGAAGGCAGAATCGATATACAAGCATCAGGCAGACCCCTCCAAA
AAGAAACGCTGTATATCGTTCCGCCTTATGAAACATTCGGAATCACAGCTTCGTCAGAGGAAATCAGCGTTTATCTCATC
AGGCTGCAGCCCTACTGCTATGAAGACCGCCGCCTGACGCTTCAAGCAGACACCGACCCTGACGCTTTTTCCGACCTTCA
GATGATGAATGTCCATCCTGTCGGAAATCTGGCCTCCCGTCTTCAGGAACTTTCCGCCTTATGGCCGGCATCTTCAGCGC
TCCAGGAGCTGAAATGCCAAGCAGATCTGCAGCAGCTTCTGTACGATATCTATTCGGCCAAACTGACTCATCCCGAAAAC
ACCGCATCAGCCATAGGAAAAACAAAGGAGTATATTGAGGAGCATTCAGATGCACACCTGACGCTTGATCAACTCGCGCA
AATGGCCGGAATCAGCGCGAAGCACTACAGCGAAAGGTTCAAAAAGCTGTACGGTCAAAGCGTGACAGAGTTTATCACTG
AGACGCGGATGACGAAAGCGAAGCAGCTGATGGCAAAAGCGAGCTACAAGCTGAGGGAAATTTCAAGCCAAATCGGATAT
CAGGATGAATTTTATTTCAGCAGGACGTTTAAGAAGCATACAGGCTTATCCCCGACCGTTTATATGAAAAAAAGGCGCAG
AAAGCTGGCTGCCTACGGCCAGAACACGATCGGACAGCTGATACCGCTTCACCTCATTCCTTACGCCGCTTCCCTGCATC
CGAAGTGGACATCATATTACTATAAGCATTACGCGGCAGATATTCCGGTCCATCTGAGCGCATACCGCTTTCACGAGCCG
TGGGAAGAAAACCTGCGGACATTGTCATCGGCTGACCCGGAGCTCATTATCAGCATGGACAGCGTGTCTCACGAGGAACG
GGAACAGCTCCAGTCGATCGCGGATGTCTTCTTTTTGCCTTCACAGGAACAATGGAGGAGGCATTTTATGCTGACCGCAT
CCCATTTGGACGAAGAAGCGGAGGCTCACAAATGGCTGCTGTCTTACCAGCGTCTCACCGAGACCGCGAAAGAGGCGCTT
TATCCGATCTGCGGACGCCGAAGCTTTTTGTTTTTGCGCTTGCATAAACACGAGATTTATCTGGCGCATAACCGTTCTGT
TCAAGATGTATTTTTCGGCGACCTTGGCTTTGAATCGGCTGTGTCGCTGGAAGAACCGACTGACCGGGCCGTGTCGATCG
AAACAATCGCAGCCTATCAGCCGGATATCATTATGATTTTCATTTTTAAAGAGCCGGAGACGCTGGCATTCTACAGGGAG
CTTCAGCAGTCGGCTGCTTGGCAGGATTTGAAAGCGGTGCGGCATCACCGGGTGTATCAGGTGAATTCTGATCCTTGGCG
GGAATATTCCGCATGCAGCCATGAACGAATCATCCGCCAGGCGGTTCGGCTGCTGTCCGGAAAAAATCCATTTTAA

Upstream 100 bases:

>100_bases
ATTTTGTGCCGGACAAGCACCCCGCAACCAATTTACCATATTGTTTTAGGGGCATTTTTATTTTTTGTAATATCACTGGG
TTAAGAAAGGCGGTTTTTCT

Downstream 100 bases:

>100_bases
TTGCCGGATATTATCCATGGTGTTATCGAAGAGGCTTACCTATAATTTTAATTGATAATAGTTATCAATTAAATCAGGGG
GTCTCAGTCAGATGAGAAAA

Product: YbbB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 531; Mature: 531

Protein sequence:

>531_residues
MKSSYFYRLLQIDHIRKPGDLPDEQQLADSFVLIFHLKGEGRIDIQASGRPLQKETLYIVPPYETFGITASSEEISVYLI
RLQPYCYEDRRLTLQADTDPDAFSDLQMMNVHPVGNLASRLQELSALWPASSALQELKCQADLQQLLYDIYSAKLTHPEN
TASAIGKTKEYIEEHSDAHLTLDQLAQMAGISAKHYSERFKKLYGQSVTEFITETRMTKAKQLMAKASYKLREISSQIGY
QDEFYFSRTFKKHTGLSPTVYMKKRRRKLAAYGQNTIGQLIPLHLIPYAASLHPKWTSYYYKHYAADIPVHLSAYRFHEP
WEENLRTLSSADPELIISMDSVSHEEREQLQSIADVFFLPSQEQWRRHFMLTASHLDEEAEAHKWLLSYQRLTETAKEAL
YPICGRRSFLFLRLHKHEIYLAHNRSVQDVFFGDLGFESAVSLEEPTDRAVSIETIAAYQPDIIMIFIFKEPETLAFYRE
LQQSAAWQDLKAVRHHRVYQVNSDPWREYSACSHERIIRQAVRLLSGKNPF

Sequences:

>Translated_531_residues
MKSSYFYRLLQIDHIRKPGDLPDEQQLADSFVLIFHLKGEGRIDIQASGRPLQKETLYIVPPYETFGITASSEEISVYLI
RLQPYCYEDRRLTLQADTDPDAFSDLQMMNVHPVGNLASRLQELSALWPASSALQELKCQADLQQLLYDIYSAKLTHPEN
TASAIGKTKEYIEEHSDAHLTLDQLAQMAGISAKHYSERFKKLYGQSVTEFITETRMTKAKQLMAKASYKLREISSQIGY
QDEFYFSRTFKKHTGLSPTVYMKKRRRKLAAYGQNTIGQLIPLHLIPYAASLHPKWTSYYYKHYAADIPVHLSAYRFHEP
WEENLRTLSSADPELIISMDSVSHEEREQLQSIADVFFLPSQEQWRRHFMLTASHLDEEAEAHKWLLSYQRLTETAKEAL
YPICGRRSFLFLRLHKHEIYLAHNRSVQDVFFGDLGFESAVSLEEPTDRAVSIETIAAYQPDIIMIFIFKEPETLAFYRE
LQQSAAWQDLKAVRHHRVYQVNSDPWREYSACSHERIIRQAVRLLSGKNPF
>Mature_531_residues
MKSSYFYRLLQIDHIRKPGDLPDEQQLADSFVLIFHLKGEGRIDIQASGRPLQKETLYIVPPYETFGITASSEEISVYLI
RLQPYCYEDRRLTLQADTDPDAFSDLQMMNVHPVGNLASRLQELSALWPASSALQELKCQADLQQLLYDIYSAKLTHPEN
TASAIGKTKEYIEEHSDAHLTLDQLAQMAGISAKHYSERFKKLYGQSVTEFITETRMTKAKQLMAKASYKLREISSQIGY
QDEFYFSRTFKKHTGLSPTVYMKKRRRKLAAYGQNTIGQLIPLHLIPYAASLHPKWTSYYYKHYAADIPVHLSAYRFHEP
WEENLRTLSSADPELIISMDSVSHEEREQLQSIADVFFLPSQEQWRRHFMLTASHLDEEAEAHKWLLSYQRLTETAKEAL
YPICGRRSFLFLRLHKHEIYLAHNRSVQDVFFGDLGFESAVSLEEPTDRAVSIETIAAYQPDIIMIFIFKEPETLAFYRE
LQQSAAWQDLKAVRHHRVYQVNSDPWREYSACSHERIIRQAVRLLSGKNPF

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002491 [H]

Pfam domain/function: PF00165 HTH_AraC; PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 61679; Mature: 61679

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2 ; PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSSYFYRLLQIDHIRKPGDLPDEQQLADSFVLIFHLKGEGRIDIQASGRPLQKETLYIV
CCCHHHHHHHHHHHCCCCCCCCCHHHHHCCEEEEEEECCCCEEEEEECCCCCCCCEEEEE
PPYETFGITASSEEISVYLIRLQPYCYEDRRLTLQADTDPDAFSDLQMMNVHPVGNLASR
CCCHHHCEEECCCCEEEEEEEECCCEECCCEEEEEECCCCCHHCCCEEEECCCHHHHHHH
LQELSALWPASSALQELKCQADLQQLLYDIYSAKLTHPENTASAIGKTKEYIEEHSDAHL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEE
TLDQLAQMAGISAKHYSERFKKLYGQSVTEFITETRMTKAKQLMAKASYKLREISSQIGY
EHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QDEFYFSRTFKKHTGLSPTVYMKKRRRKLAAYGQNTIGQLIPLHLIPYAASLHPKWTSYY
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHH
YKHYAADIPVHLSAYRFHEPWEENLRTLSSADPELIISMDSVSHEEREQLQSIADVFFLP
HHHHHCCCCEEEEHHHCCCCHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC
SQEQWRRHFMLTASHLDEEAEAHKWLLSYQRLTETAKEALYPICGRRSFLFLRLHKHEIY
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEE
LAHNRSVQDVFFGDLGFESAVSLEEPTDRAVSIETIAAYQPDIIMIFIFKEPETLAFYRE
EEECCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEEHEECCCCEEEEEEECCCCHHHHHHH
LQQSAAWQDLKAVRHHRVYQVNSDPWREYSACSHERIIRQAVRLLSGKNPF
HHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKSSYFYRLLQIDHIRKPGDLPDEQQLADSFVLIFHLKGEGRIDIQASGRPLQKETLYIV
CCCHHHHHHHHHHHCCCCCCCCCHHHHHCCEEEEEEECCCCEEEEEECCCCCCCCEEEEE
PPYETFGITASSEEISVYLIRLQPYCYEDRRLTLQADTDPDAFSDLQMMNVHPVGNLASR
CCCHHHCEEECCCCEEEEEEEECCCEECCCEEEEEECCCCCHHCCCEEEECCCHHHHHHH
LQELSALWPASSALQELKCQADLQQLLYDIYSAKLTHPENTASAIGKTKEYIEEHSDAHL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEE
TLDQLAQMAGISAKHYSERFKKLYGQSVTEFITETRMTKAKQLMAKASYKLREISSQIGY
EHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QDEFYFSRTFKKHTGLSPTVYMKKRRRKLAAYGQNTIGQLIPLHLIPYAASLHPKWTSYY
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHH
YKHYAADIPVHLSAYRFHEPWEENLRTLSSADPELIISMDSVSHEEREQLQSIADVFFLP
HHHHHCCCCEEEEHHHCCCCHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC
SQEQWRRHFMLTASHLDEEAEAHKWLLSYQRLTETAKEALYPICGRRSFLFLRLHKHEIY
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEE
LAHNRSVQDVFFGDLGFESAVSLEEPTDRAVSIETIAAYQPDIIMIFIFKEPETLAFYRE
EEECCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEEHEECCCCEEEEEEECCCCHHHHHHH
LQQSAAWQDLKAVRHHRVYQVNSDPWREYSACSHERIIRQAVRLLSGKNPF
HHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]