Click here to switch to the map view.

The map label for this gene is ywqB [H]

Identifier: 52787536

GI number: 52787536

Start: 3683590

End: 3685188

Strand: Direct

Name: ywqB [H]

Synonym: BLi03857

Alternate gene names: 52787536

Gene position: 3683590-3685188 (Clockwise)

Preceding gene: 52787532

Following gene: 52787537

Centisome position: 87.23

GC content: 46.78

Gene sequence:

>1599_bases
ATGCTTCAAGACATGATCTCAAAAACGGTTGTGATGGATGCAGCTGAACAGTTTAAGCATGTACTGCCGTGCACAGAAGA
AAACATTCAGCTCATGAAAAAAGCCCTTATTTTATACAGACAGGATTCCGTCTATCGGGTCAAGCCGATGAGCGGGCATA
CGGTCAGCGCTTACGTCCAGGACGTTGTCCCGGTAAAGGTCTTCATCGACCTCGCCGACGTTAAAAAAAGCAGCTGTTCC
TGCCCTGCTCAAAACATGTGCCGTCATGTGCTTGCCGTTTACTTATATCTATATGCACAATATGATCGATTGGGAACATT
TACGGAGTTTTGGAAGGAAGCGCAAAAACGCCGCGAAAACCGGGAGATTCTCGGACAGCTTCAGCGCGGAATGAAGCCCC
GCAGCCACACGCTCGATCAATGGACCTCCTTTTTCAATACGGAGTTCAGACGCTGGGAGGAGCATACGCCTAAAAACCAG
CAAACGATGCAATACCTTTACTACGGGTATTTTTCAGCTTTAAAAAAGCGGACGCCTGCGGAGCCGGAGCTGAAAAAAAT
GTATCAAATCCACGCGGCTCTTGCGACATGGCTTGCTATGCATTCACTCGTCGAGAAAGGGCGCATCGATCCTGAAAAAG
ATTTTTACTCGCTGAATCCTTATATCGAACAGCTGATGGATACGATCTACAGCTCGATCGATGAACTGAAAACATATGCG
CTATCGTTCTCCCTTGACCCGTTTTTAGAAAAAACCCCCGGCGTGATTCGGGAACTGCTGCTCAAGAAAGATATTTTCCA
GTATGAAAGGCTGCGGATTTTCGGGGAGATCTGGAGTGCGCTTCTATCCCGGCCAAACTGGCTGAAGCGGGAGCTCGATG
TGCTGAACAATCTGGAGCCTTCGCCTGAAATACAATTCGGCAGGCTGCATCTTGAATTTCTGCTGAAAAACGATGATGTG
ATTCTTGATCAAGCCGGATCGTTTTCACCGGAGATTCTTCCGTATACGTTTCAATGGCTCAGTGTCATGACCGCCAAAAA
GGACTGGAAGCGCCTGAAAAAATGGTATGAACACCTTGAGCAGCTGGCGGCCGGCTTCTGCAGACTGGATAAACCGTACC
GGGAAATACGCGATGTACTAAGCGAATTCTTCCTGTTTCTAAGCGATTACAGCAAAAACGCAAAAGAAGAGCATGTATTT
GAACGGTATTGCAAAGAGTGCCTTCCTTATACATTTACTGAATACAGCCATTTTTTATATAACAAAAACCGCTTTACGGA
GTGGATGGAGATCCACAGCCTTGTCGGTTTTTCAATCTCTGAGATAGGGCAGAACGCCTTGAAAGACATTGCGGCAGCGG
CTCCTGAAGCATTGATCCCTTCCTATCACAGAGAAATTTCCGGGCTGGTTGAACAAAAAAACCGCTCAAGCTACAAAGAA
GCCGTCAAACAATTAAAAAAGCTGCGCACCCTTTATAAAAAAGCGAAAAAACAGGATGTCTGGAACCGGTTTATGGAGCA
GTTTTCAGCCCGCTATAAACGGCTGAGAGCCTTCCAGGAGGAGCTTAAGAAAGGAAAGTTGATCGATGGCGAGTCTTAA

Upstream 100 bases:

>100_bases
TATGTCCTTTTCCTGAGAAAATCTTTTTTGGACGGATTGATTAAGCTATAATAGAGAGATTGGAAACTTTTTAAAAGTCA
TTCGGTTAGGAGCGATAGAC

Downstream 100 bases:

>100_bases
GGAAATCGTAATACATGTCGAACAGTCAGAAGACTATACATTTATTTTATCTTGTCATGACGGGGATCATCAGTTTCTTA
CGCGAAATGAAATGGAAAGG

Product: YwqB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 532; Mature: 532

Protein sequence:

>532_residues
MLQDMISKTVVMDAAEQFKHVLPCTEENIQLMKKALILYRQDSVYRVKPMSGHTVSAYVQDVVPVKVFIDLADVKKSSCS
CPAQNMCRHVLAVYLYLYAQYDRLGTFTEFWKEAQKRRENREILGQLQRGMKPRSHTLDQWTSFFNTEFRRWEEHTPKNQ
QTMQYLYYGYFSALKKRTPAEPELKKMYQIHAALATWLAMHSLVEKGRIDPEKDFYSLNPYIEQLMDTIYSSIDELKTYA
LSFSLDPFLEKTPGVIRELLLKKDIFQYERLRIFGEIWSALLSRPNWLKRELDVLNNLEPSPEIQFGRLHLEFLLKNDDV
ILDQAGSFSPEILPYTFQWLSVMTAKKDWKRLKKWYEHLEQLAAGFCRLDKPYREIRDVLSEFFLFLSDYSKNAKEEHVF
ERYCKECLPYTFTEYSHFLYNKNRFTEWMEIHSLVGFSISEIGQNALKDIAAAAPEALIPSYHREISGLVEQKNRSSYKE
AVKQLKKLRTLYKKAKKQDVWNRFMEQFSARYKRLRAFQEELKKGKLIDGES

Sequences:

>Translated_532_residues
MLQDMISKTVVMDAAEQFKHVLPCTEENIQLMKKALILYRQDSVYRVKPMSGHTVSAYVQDVVPVKVFIDLADVKKSSCS
CPAQNMCRHVLAVYLYLYAQYDRLGTFTEFWKEAQKRRENREILGQLQRGMKPRSHTLDQWTSFFNTEFRRWEEHTPKNQ
QTMQYLYYGYFSALKKRTPAEPELKKMYQIHAALATWLAMHSLVEKGRIDPEKDFYSLNPYIEQLMDTIYSSIDELKTYA
LSFSLDPFLEKTPGVIRELLLKKDIFQYERLRIFGEIWSALLSRPNWLKRELDVLNNLEPSPEIQFGRLHLEFLLKNDDV
ILDQAGSFSPEILPYTFQWLSVMTAKKDWKRLKKWYEHLEQLAAGFCRLDKPYREIRDVLSEFFLFLSDYSKNAKEEHVF
ERYCKECLPYTFTEYSHFLYNKNRFTEWMEIHSLVGFSISEIGQNALKDIAAAAPEALIPSYHREISGLVEQKNRSSYKE
AVKQLKKLRTLYKKAKKQDVWNRFMEQFSARYKRLRAFQEELKKGKLIDGES
>Mature_532_residues
MLQDMISKTVVMDAAEQFKHVLPCTEENIQLMKKALILYRQDSVYRVKPMSGHTVSAYVQDVVPVKVFIDLADVKKSSCS
CPAQNMCRHVLAVYLYLYAQYDRLGTFTEFWKEAQKRRENREILGQLQRGMKPRSHTLDQWTSFFNTEFRRWEEHTPKNQ
QTMQYLYYGYFSALKKRTPAEPELKKMYQIHAALATWLAMHSLVEKGRIDPEKDFYSLNPYIEQLMDTIYSSIDELKTYA
LSFSLDPFLEKTPGVIRELLLKKDIFQYERLRIFGEIWSALLSRPNWLKRELDVLNNLEPSPEIQFGRLHLEFLLKNDDV
ILDQAGSFSPEILPYTFQWLSVMTAKKDWKRLKKWYEHLEQLAAGFCRLDKPYREIRDVLSEFFLFLSDYSKNAKEEHVF
ERYCKECLPYTFTEYSHFLYNKNRFTEWMEIHSLVGFSISEIGQNALKDIAAAAPEALIPSYHREISGLVEQKNRSSYKE
AVKQLKKLRTLYKKAKKQDVWNRFMEQFSARYKRLRAFQEELKKGKLIDGES

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SWIM-type zinc finger [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007527 [H]

Pfam domain/function: PF04434 SWIM [H]

EC number: NA

Molecular weight: Translated: 63139; Mature: 63139

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: PS50966 ZF_SWIM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]