Click here to switch to the map view.

The map label for this gene is yvnA [H]

Identifier: 52787258

GI number: 52787258

Start: 3414288

End: 3414770

Strand: Reverse

Name: yvnA [H]

Synonym: BLi03569

Alternate gene names: 52787258

Gene position: 3414770-3414288 (Counterclockwise)

Preceding gene: 52787259

Following gene: 52787257

Centisome position: 80.87

GC content: 44.51

Gene sequence:

>483_bases
ATGATGACAGTGGAAAACAAGACGTATGAGCAGGCATTTCAAGCCGTTCAGGATTTTATTCTCAAAAGAGAAAAGCGGGC
TCAGCATGAACAGCAGGCGTTCGCAGAGGAAGCCTTTCAAGAAGAAGAAAGCATGCGTAAGCATTGGACCCTGACCCAGC
TTCACATTATCTCGCTTATCAGCGAAAGCGAAGCAGACGTCAACAACGCTTTCCTGGCAGCAAAACTCCAAATTTCAAAA
GCGGCAGTGACAAAAGCGGTCAATGTGCTCACAAAGCACGGAATGATCGAATCGCACAAAAAACCGAACAACAACAAAGA
ATTGTATTACACATTAACCGATGAGGGGAAAAAACTGGCCGACATTCATGACAGGATGCATGAAATTGCAAAACAGCGCT
ACATCGAGCTGTTTGATCGGTTTTCCGAATCCGAGCTGCAAACCGTCATCCGCTTTTTAAACGAATGGTCAAAACACATT
TAA

Upstream 100 bases:

>100_bases
CTGCGGATCTTTCTGCATCATATGCTTTTTTTTGCTTGCTTTAATTATTGTTAACTGGTAAACTATTTAATAGTTAACCG
GTTAATGATTGTGAAAAGGA

Downstream 100 bases:

>100_bases
TCAAGAGGAGCAGCGAATGAATAAAAGTGAAGCCCAACAGTTTTTAAGCAACATGTATCAGGACATCGTGTCGGAAATGA
ATACTGAAAAAATTGCCGAT

Product: YvnA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MMTVENKTYEQAFQAVQDFILKREKRAQHEQQAFAEEAFQEEESMRKHWTLTQLHIISLISESEADVNNAFLAAKLQISK
AAVTKAVNVLTKHGMIESHKKPNNNKELYYTLTDEGKKLADIHDRMHEIAKQRYIELFDRFSESELQTVIRFLNEWSKHI

Sequences:

>Translated_160_residues
MMTVENKTYEQAFQAVQDFILKREKRAQHEQQAFAEEAFQEEESMRKHWTLTQLHIISLISESEADVNNAFLAAKLQISK
AAVTKAVNVLTKHGMIESHKKPNNNKELYYTLTDEGKKLADIHDRMHEIAKQRYIELFDRFSESELQTVIRFLNEWSKHI
>Mature_160_residues
MMTVENKTYEQAFQAVQDFILKREKRAQHEQQAFAEEAFQEEESMRKHWTLTQLHIISLISESEADVNNAFLAAKLQISK
AAVTKAVNVLTKHGMIESHKKPNNNKELYYTLTDEGKKLADIHDRMHEIAKQRYIELFDRFSESELQTVIRFLNEWSKHI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 18837; Mature: 18837

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTVENKTYEQAFQAVQDFILKREKRAQHEQQAFAEEAFQEEESMRKHWTLTQLHIISLI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SESEADVNNAFLAAKLQISKAAVTKAVNVLTKHGMIESHKKPNNNKELYYTLTDEGKKLA
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCEEEEEECCCCCHHH
DIHDRMHEIAKQRYIELFDRFSESELQTVIRFLNEWSKHI
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMTVENKTYEQAFQAVQDFILKREKRAQHEQQAFAEEAFQEEESMRKHWTLTQLHIISLI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SESEADVNNAFLAAKLQISKAAVTKAVNVLTKHGMIESHKKPNNNKELYYTLTDEGKKLA
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCEEEEEECCCCCHHH
DIHDRMHEIAKQRYIELFDRFSESELQTVIRFLNEWSKHI
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]