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The map label for this gene is xylA

Identifier: 52787249

GI number: 52787249

Start: 3404781

End: 3406004

Strand: Reverse

Name: xylA

Synonym: BLi03559

Alternate gene names: NA

Gene position: 3406004-3404781 (Counterclockwise)

Preceding gene: 52787250

Following gene: 52787248

Centisome position: 80.66

GC content: 50.41

Gene sequence:

>1224_bases
ATGATGAATGACCGGGCCTACGCTTTATTTGAAGAACAGCAGAAAGACAGGGGAATCAGCCTTTCTGAAGCAAAGGAAAA
ATTGAAAGCGCTTAAAATCGAGACGCCTTCATGGGGATACGGGGACTCGGGCACGCGCTTCAAAGTGTTTCAGCAAGAGG
GTGTGCCAAGAGATCCGTTTGAAAAAATGGAAGATGCATCAGTCGTTCACAAATTAACCGGAATTTGTCCTTCCGTCGCC
ATCCATATTCCTTGGGATCGAGTTGATGATTACGGAAAGCTGAAAGCGCACGCCGAGCAGCTTGGCCTTGCTATCGGCGC
CGTGAATCCGAACTTGTTCCAGGACGATGACTACAAATTCGGCAGCGTCACAAACGTGAAAGCGGCCATTCGCCAAAAAG
CGACTGAGCAATTGCTCGAATGCGTCGATATTGCAAAACAAACAGGCTCCAAGGAAATCAGCCTCTGGCTTGCCGACGGA
ACCAACTATCCCGGTCAGGGCGACATCAGAAAACGGAAAAACTGGATGTATGAGTGTCTGGCTGAAGTTTACGAAGCTCT
TGACGATGATATGCGGCTCTTGATTGAATACAAATTTTTTGAGCCGGCTTTTTATCATACCGATCTGGCGGATTGGGGCA
TGGCTTACAATTTGGCGCAAAAGCTCGGCCCGAAGGCTGAGGTGCTCGTCGACACCGGCCACCATGCCCAGGGGACGAAC
ATCGAGCACATTGTCGCTTATTTGCTTGACGAAAAACGTCTCGGAGGCTTTCATTTCAACAGCCGCAAATACGCTGATGA
CGATTTGATCGCGGGCGCTCACAACCCGTACGAACTGTTTCTCATTTTTTCTCAAATTTTGGACGCCTGCCGTGATTCTG
ACCCGAACGTCCGGAAGACGGCCGAACATATTTCGTATATGCTTGATCAATGCCATAATCTTGAACCGAAAATACCCGCT
GTGCTGCGCTCGGTCATGAATGTGCAGACTCAATTTGCAAAAGCGCTTTTGATCAACTTCGATGAAGTGAAGAAAGCGCA
GGAAGATCATGACGTGCTTGCCGCAGAGGCTGCGATCCGCGAGGCATTTGAAATCGACGTCAAGCCGCTCCTCTGCGCCG
TGCGGGAGGAAATGAACGTTCCGCCTGATCCGCTCAAGGCTTATGCGGAAAGCGGATATGCGGAAAAAATCCTGGCACGC
GGGAAAGGCGGTGCAAGCTGGTGA

Upstream 100 bases:

>100_bases
CCTGTGATCGTCCAGTACAGCCGGCTGGACACGACCCAGCCGGAACTTGCGTTAATGTCAACCATGGCATATCCGTTAAA
AACAAGGGGGATGGGCGTAC

Downstream 100 bases:

>100_bases
CGATTCTCGCCTTTGATCTTGGTGCGTCGAGCGGCAGAGCTTATGCAGGTCATGTGGACGGCGGTCTGATCAAAGCGGAG
GAAATTCACCGTTTTCCAAA

Product: XylA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MMNDRAYALFEEQQKDRGISLSEAKEKLKALKIETPSWGYGDSGTRFKVFQQEGVPRDPFEKMEDASVVHKLTGICPSVA
IHIPWDRVDDYGKLKAHAEQLGLAIGAVNPNLFQDDDYKFGSVTNVKAAIRQKATEQLLECVDIAKQTGSKEISLWLADG
TNYPGQGDIRKRKNWMYECLAEVYEALDDDMRLLIEYKFFEPAFYHTDLADWGMAYNLAQKLGPKAEVLVDTGHHAQGTN
IEHIVAYLLDEKRLGGFHFNSRKYADDDLIAGAHNPYELFLIFSQILDACRDSDPNVRKTAEHISYMLDQCHNLEPKIPA
VLRSVMNVQTQFAKALLINFDEVKKAQEDHDVLAAEAAIREAFEIDVKPLLCAVREEMNVPPDPLKAYAESGYAEKILAR
GKGGASW

Sequences:

>Translated_407_residues
MMNDRAYALFEEQQKDRGISLSEAKEKLKALKIETPSWGYGDSGTRFKVFQQEGVPRDPFEKMEDASVVHKLTGICPSVA
IHIPWDRVDDYGKLKAHAEQLGLAIGAVNPNLFQDDDYKFGSVTNVKAAIRQKATEQLLECVDIAKQTGSKEISLWLADG
TNYPGQGDIRKRKNWMYECLAEVYEALDDDMRLLIEYKFFEPAFYHTDLADWGMAYNLAQKLGPKAEVLVDTGHHAQGTN
IEHIVAYLLDEKRLGGFHFNSRKYADDDLIAGAHNPYELFLIFSQILDACRDSDPNVRKTAEHISYMLDQCHNLEPKIPA
VLRSVMNVQTQFAKALLINFDEVKKAQEDHDVLAAEAAIREAFEIDVKPLLCAVREEMNVPPDPLKAYAESGYAEKILAR
GKGGASW
>Mature_407_residues
MMNDRAYALFEEQQKDRGISLSEAKEKLKALKIETPSWGYGDSGTRFKVFQQEGVPRDPFEKMEDASVVHKLTGICPSVA
IHIPWDRVDDYGKLKAHAEQLGLAIGAVNPNLFQDDDYKFGSVTNVKAAIRQKATEQLLECVDIAKQTGSKEISLWLADG
TNYPGQGDIRKRKNWMYECLAEVYEALDDDMRLLIEYKFFEPAFYHTDLADWGMAYNLAQKLGPKAEVLVDTGHHAQGTN
IEHIVAYLLDEKRLGGFHFNSRKYADDDLIAGAHNPYELFLIFSQILDACRDSDPNVRKTAEHISYMLDQCHNLEPKIPA
VLRSVMNVQTQFAKALLINFDEVKKAQEDHDVLAAEAAIREAFEIDVKPLLCAVREEMNVPPDPLKAYAESGYAEKILAR
GKGGASW

Specific function: Unknown

COG id: COG4952

COG function: function code M; Predicted sugar isomerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnose isomerase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013451
- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: NA

Molecular weight: Translated: 45875; Mature: 45875

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNDRAYALFEEQQKDRGISLSEAKEKLKALKIETPSWGYGDSGTRFKVFQQEGVPRDPF
CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCHH
EKMEDASVVHKLTGICPSVAIHIPWDRVDDYGKLKAHAEQLGLAIGAVNPNLFQDDDYKF
HHHHHHHHHHHHHCCCCCCEEECCHHHCCCHHHHHHHHHHHCEEEECCCCCCCCCCCCCC
GSVTNVKAAIRQKATEQLLECVDIAKQTGSKEISLWLADGTNYPGQGDIRKRKNWMYECL
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH
AEVYEALDDDMRLLIEYKFFEPAFYHTDLADWGMAYNLAQKLGPKAEVLVDTGHHAQGTN
HHHHHHHCHHHEEHHEEHHCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
IEHIVAYLLDEKRLGGFHFNSRKYADDDLIAGAHNPYELFLIFSQILDACRDSDPNVRKT
HHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHH
AEHISYMLDQCHNLEPKIPAVLRSVMNVQTQFAKALLINFDEVKKAQEDHDVLAAEAAIR
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
EAFEIDVKPLLCAVREEMNVPPDPLKAYAESGYAEKILARGKGGASW
HHHHCCHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHCCCCCCCC
>Mature Secondary Structure
MMNDRAYALFEEQQKDRGISLSEAKEKLKALKIETPSWGYGDSGTRFKVFQQEGVPRDPF
CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCHH
EKMEDASVVHKLTGICPSVAIHIPWDRVDDYGKLKAHAEQLGLAIGAVNPNLFQDDDYKF
HHHHHHHHHHHHHCCCCCCEEECCHHHCCCHHHHHHHHHHHCEEEECCCCCCCCCCCCCC
GSVTNVKAAIRQKATEQLLECVDIAKQTGSKEISLWLADGTNYPGQGDIRKRKNWMYECL
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH
AEVYEALDDDMRLLIEYKFFEPAFYHTDLADWGMAYNLAQKLGPKAEVLVDTGHHAQGTN
HHHHHHHCHHHEEHHEEHHCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
IEHIVAYLLDEKRLGGFHFNSRKYADDDLIAGAHNPYELFLIFSQILDACRDSDPNVRKT
HHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHH
AEHISYMLDQCHNLEPKIPAVLRSVMNVQTQFAKALLINFDEVKKAQEDHDVLAAEAAIR
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
EAFEIDVKPLLCAVREEMNVPPDPLKAYAESGYAEKILARGKGGASW
HHHHCCHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]