Click here to switch to the map view.

The map label for this gene is pehX [H]

Identifier: 52787202

GI number: 52787202

Start: 3350035

End: 3351345

Strand: Reverse

Name: pehX [H]

Synonym: BLi03511

Alternate gene names: 52787202

Gene position: 3351345-3350035 (Counterclockwise)

Preceding gene: 52787203

Following gene: 52787200

Centisome position: 79.37

GC content: 49.5

Gene sequence:

>1311_bases
GTGAGTCTGCAGAAAATAAAAGAAGAGATTGTAAAGAAGCTGAAGGTTCCGGTATTTCCGAATCGCTCATTTGATGTCAC
ATCGTTTGGGGCTGACGAAAACGGAAAAAACGATTCGACCGAAGCGATACAGAAGGCGATTGATCAAGCCCACCAAGCCG
GCGGCGGAAGAGTAACGGTTCCTGAAGGCGTGTTTCTTTCCGGTGCGCTCAGATTGAAAAGCAATGTGGATCTTCATATT
GCAAAGGGAGCGGTGATCAAATTCAGTCAGAACCCTGAAGATTATCTCCCTGTTGTGCTGACGAGGTTTGAAGGAGTCGA
GCTCTATAATTATTCACCGCTCATCTACGCTTACGAAGCCGATAATATTGCGATAACCGGAAAGGGCACGCTTGACGGTC
AAGGAGATGACGAGCATTGGTGGCCGTGGAAAAGAGGAACGAACGGCCAGCCTTCACAGGAAAAAGATCGGAACGCTTTG
TTTGAAATGGCTGAGCGCGGTATCCCGGTCACTGAGCGGCAGTTTGGAAAAGGGCATTATTTGCGGCCGAATTTCATTCA
GCCGTATCGCTGCAAACATATATTGATTCAAGGCGTCACTGTGCTGAATTCGCCGATGTGGCAAGTTCATCCCGTGCTTT
GCGAGAATGTGACAGTGGACGGCATCAAAGTCATCGGACACGGCCCCAATACCGACGGAGTCAACCCGGAATCGTGTAAA
AACGTGGTGATCAAGGGCTGCCATTTTGATAATGGAGACGACTGCATCGCCGTCAAATCGGGAAGAAATGCGGACGGCCG
AAGGATCAACATTCCGTCGGAAAACATCGTCATTGAACATAACGAAATGAAAGACGGGCATGGAGGGGTCACGATCGGAA
GCGAAATTTCCGGCGGCGTGAAGAACGTCATCGCAGAGGGCAATCTTATGGACAGCCCGAACTTGGACAGAGCCCTCCGC
ATTAAAACGAATTCGGTGCGTGGCGGCGTTCTTGAAAACATCTACTTTCACAAAAATACGGTCAAAAGCTTGAAGCGCGA
AGTGATCGCCATCGATATGGAATATGAAGAAGGAGATGCCGGAGATTTCAAACCTGTCGTCCGCACGGTTGATGTTAAGC
AGCTGAAAAGCATGGGCGGACAATACGGGATCAGGGTGCTGGCATACGACCACTCTCCGGTCACCGGGCTGAAAGTGGCT
GATTCCGAGATCGACGGCGTCGATGTTCCGATGGAACTGAAACATGTGAAAGACCCCGTTTTTTCGAATCTGTATATTAA
CGGAAAACGCTATGACTCACACAAAGCCTAA

Upstream 100 bases:

>100_bases
ATCGAAGTCGCAAGCGGCAGGCAGCTGAACAATGAGATAAACGATTTCAGGGAGCTTGCGATATTTAAAACAGGCGTCAC
ATTATAAAGGGGGCGGTAAC

Downstream 100 bases:

>100_bases
ACATAAATCCTCTGCAGACATGCAGAGGATTTTTCTTTTAACGCGGCGGCGCATCAGCGGTTTCGCTTTTGACCGAGGAA
ATCAGCAGTTTCATAAACAC

Product: hypothetical protein

Products: NA

Alternate protein names: Exo-PG [H]

Number of amino acids: Translated: 436; Mature: 435

Protein sequence:

>436_residues
MSLQKIKEEIVKKLKVPVFPNRSFDVTSFGADENGKNDSTEAIQKAIDQAHQAGGGRVTVPEGVFLSGALRLKSNVDLHI
AKGAVIKFSQNPEDYLPVVLTRFEGVELYNYSPLIYAYEADNIAITGKGTLDGQGDDEHWWPWKRGTNGQPSQEKDRNAL
FEMAERGIPVTERQFGKGHYLRPNFIQPYRCKHILIQGVTVLNSPMWQVHPVLCENVTVDGIKVIGHGPNTDGVNPESCK
NVVIKGCHFDNGDDCIAVKSGRNADGRRINIPSENIVIEHNEMKDGHGGVTIGSEISGGVKNVIAEGNLMDSPNLDRALR
IKTNSVRGGVLENIYFHKNTVKSLKREVIAIDMEYEEGDAGDFKPVVRTVDVKQLKSMGGQYGIRVLAYDHSPVTGLKVA
DSEIDGVDVPMELKHVKDPVFSNLYINGKRYDSHKA

Sequences:

>Translated_436_residues
MSLQKIKEEIVKKLKVPVFPNRSFDVTSFGADENGKNDSTEAIQKAIDQAHQAGGGRVTVPEGVFLSGALRLKSNVDLHI
AKGAVIKFSQNPEDYLPVVLTRFEGVELYNYSPLIYAYEADNIAITGKGTLDGQGDDEHWWPWKRGTNGQPSQEKDRNAL
FEMAERGIPVTERQFGKGHYLRPNFIQPYRCKHILIQGVTVLNSPMWQVHPVLCENVTVDGIKVIGHGPNTDGVNPESCK
NVVIKGCHFDNGDDCIAVKSGRNADGRRINIPSENIVIEHNEMKDGHGGVTIGSEISGGVKNVIAEGNLMDSPNLDRALR
IKTNSVRGGVLENIYFHKNTVKSLKREVIAIDMEYEEGDAGDFKPVVRTVDVKQLKSMGGQYGIRVLAYDHSPVTGLKVA
DSEIDGVDVPMELKHVKDPVFSNLYINGKRYDSHKA
>Mature_435_residues
SLQKIKEEIVKKLKVPVFPNRSFDVTSFGADENGKNDSTEAIQKAIDQAHQAGGGRVTVPEGVFLSGALRLKSNVDLHIA
KGAVIKFSQNPEDYLPVVLTRFEGVELYNYSPLIYAYEADNIAITGKGTLDGQGDDEHWWPWKRGTNGQPSQEKDRNALF
EMAERGIPVTERQFGKGHYLRPNFIQPYRCKHILIQGVTVLNSPMWQVHPVLCENVTVDGIKVIGHGPNTDGVNPESCKN
VVIKGCHFDNGDDCIAVKSGRNADGRRINIPSENIVIEHNEMKDGHGGVTIGSEISGGVKNVIAEGNLMDSPNLDRALRI
KTNSVRGGVLENIYFHKNTVKSLKREVIAIDMEYEEGDAGDFKPVVRTVDVKQLKSMGGQYGIRVLAYDHSPVTGLKVAD
SEIDGVDVPMELKHVKDPVFSNLYINGKRYDSHKA

Specific function: Contributes significantly to bacterial utilization of polygalacturonate and the induction of pectate lyase in the presence of extracellular pectic polymers [H]

COG id: COG5434

COG function: function code M; Endopolygalacturonase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 PbH1 repeats [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6322613, Length=192, Percent_Identity=30.2083333333333, Blast_Score=64, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008957
- InterPro:   IPR003961
- InterPro:   IPR000743
- InterPro:   IPR013783
- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF00041 fn3; PF00295 Glyco_hydro_28 [H]

EC number: =3.2.1.82 [H]

Molecular weight: Translated: 48140; Mature: 48009

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: PS00502 POLYGALACTURONASE ; PS00449 ATPASE_A

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLQKIKEEIVKKLKVPVFPNRSFDVTSFGADENGKNDSTEAIQKAIDQAHQAGGGRVTV
CCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEC
PEGVFLSGALRLKSNVDLHIAKGAVIKFSQNPEDYLPVVLTRFEGVELYNYSPLIYAYEA
CCCEEEEEEEEECCCCCEEEECCEEEEECCCCCHHHCEEEEECCCEEEEECCCEEEEEEC
DNIAITGKGTLDGQGDDEHWWPWKRGTNGQPSQEKDRNALFEMAERGIPVTERQFGKGHY
CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCC
LRPNFIQPYRCKHILIQGVTVLNSPMWQVHPVLCENVTVDGIKVIGHGPNTDGVNPESCK
CCCCCCCCHHHHEEEEECHHHHCCCCCEECHHHHCCCEECCEEEEECCCCCCCCCHHHHH
NVVIKGCHFDNGDDCIAVKSGRNADGRRINIPSENIVIEHNEMKDGHGGVTIGSEISGGV
EEEEEEEECCCCCCEEEECCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEECCCCCCCH
KNVIAEGNLMDSPNLDRALRIKTNSVRGGVLENIYFHKNTVKSLKREVIAIDMEYEEGDA
HHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHEEECHHHHHHHHCEEEEEEEEECCCCC
GDFKPVVRTVDVKQLKSMGGQYGIRVLAYDHSPVTGLKVADSEIDGVDVPMELKHVKDPV
CCCCHHHHCCCHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCHHHHHHCCCC
FSNLYINGKRYDSHKA
CCCEEECCEECCCCCC
>Mature Secondary Structure 
SLQKIKEEIVKKLKVPVFPNRSFDVTSFGADENGKNDSTEAIQKAIDQAHQAGGGRVTV
CHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEC
PEGVFLSGALRLKSNVDLHIAKGAVIKFSQNPEDYLPVVLTRFEGVELYNYSPLIYAYEA
CCCEEEEEEEEECCCCCEEEECCEEEEECCCCCHHHCEEEEECCCEEEEECCCEEEEEEC
DNIAITGKGTLDGQGDDEHWWPWKRGTNGQPSQEKDRNALFEMAERGIPVTERQFGKGHY
CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCC
LRPNFIQPYRCKHILIQGVTVLNSPMWQVHPVLCENVTVDGIKVIGHGPNTDGVNPESCK
CCCCCCCCHHHHEEEEECHHHHCCCCCEECHHHHCCCEECCEEEEECCCCCCCCCHHHHH
NVVIKGCHFDNGDDCIAVKSGRNADGRRINIPSENIVIEHNEMKDGHGGVTIGSEISGGV
EEEEEEEECCCCCCEEEECCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEECCCCCCCH
KNVIAEGNLMDSPNLDRALRIKTNSVRGGVLENIYFHKNTVKSLKREVIAIDMEYEEGDA
HHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHEEECHHHHHHHHCEEEEEEEEECCCCC
GDFKPVVRTVDVKQLKSMGGQYGIRVLAYDHSPVTGLKVADSEIDGVDVPMELKHVKDPV
CCCCHHHHCCCHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCHHHHHHCCCC
FSNLYINGKRYDSHKA
CCCEEECCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2168372; 1409594 [H]