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The map label for this gene is yncD [H]

Identifier: 52786974

GI number: 52786974

Start: 3140836

End: 3142017

Strand: Reverse

Name: yncD [H]

Synonym: BLi03274

Alternate gene names: 52786974

Gene position: 3142017-3140836 (Counterclockwise)

Preceding gene: 52786977

Following gene: 52786973

Centisome position: 74.41

GC content: 46.95

Gene sequence:

>1182_bases
ATGAAAAAGCTTTGCCGTGAAGTTTGGGTAGAGGTAAATCTTGATGCGATCAAAAAAAATTTGCGCGCGTTTCGGCGGCA
TATTCCGAAAAAGAGCAAAATTATGGCTGTCGTAAAAGCGAATGCTTATGGTCACGGATCGGTGGAAGTTGCACGCCATG
CACTTGAACATGGTGCGAGTGAGCTCGCCGTTGCCTCGGTGGAGGAAGCGGTCGTTTTACGAAAAGCGGGGATTAAAGCG
CCGATCCTTGTGCTTGGTTTCACCCCGCTGAGCTGTGTGAAAGAAGCGGCAGCTTGGAATATATCGTTATCAGCTTTTCA
AGTTGACTGGATTAAAGAAGCGAACGAGATATTGGAAAATGAAGCAGATCCTAACCGGCTGGCTGTTCATATCAATGTGG
ATACCGGCATGGGGCGTTTAGGTGTACGAACAAAGGAAAAGCTTTTAGCAATCGTGGAAGCGCTGACGGCAAGTGAAAAC
CTCGAATGGGAAGGAATTTTTACGCATTTTTCCACAGCTGACGAACCGGATACTGAGCTAACCATGATTCAACACGAAAA
GTTTATCAGCTTTCTTCGCTTTCTGAAAGAACAAGGCTTTAAGCTGCCTACGGTGCATATGAACAATACGGCCGCGGCGA
TCGCTTTTCCGGAATTCAGCGCTGATATGATTCGCTTAGGCATCGGAATGTATGGATTATATCCTTCCGATTATATCAGG
CAGCTTAATCTCGTTAAGCTTGTGCCTGCACTAAGCTTGAAGGCGCGAATCGCTTATGTGAAAACCATGTTGACTGAACC
GCGGACGGTTAGTTATGGTGCTACATATGTTGCAGAGCGCGGGGAAGTCATTGCCACAATTCCGGTCGGCTATGCTGACG
GCTATTCCCGTGAACTTTCCAACCGCGGTTTTATTCTTCATCGAGGAAGACGAGTGCCGGTGGCGGGAAGAGTAACAATG
GATATGATAATGGTCAGTCTGGGAGAGGGTGAAGGTAAACAAGGAGAGGAAGTCGTGATTTACGGCCGGCAAAAGGGAGC
AGAGATATCTGTTGATGAAATTGCGGAAATGCTTGATACGATCAACTATGAAGTGGTATCTACCATAAGCTGGCGCGTCC
CTCGTTTTTATATAAGAGACGGCGAGATTTTTAAAAAGTCGACCCCGCTGTTATACGTGTAG

Upstream 100 bases:

>100_bases
TTCGCCCGAAGCTGAATAAGAATGAGATAGAAAGCATCCGGGCAATTTTCGAACGGCTACATGAAATGAATACTATGGGA
CAAGAAAGAAGGGAGCGTTG

Downstream 100 bases:

>100_bases
TTTTCCCATACTCACAGGCCGTTTGCTCGATCATTGATCAAAATAAAAAAGAGCAATTTCTTGACAAAAAAATTTATTTA
TGCTATAATTTAATAATTAA

Product: YncD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MKKLCREVWVEVNLDAIKKNLRAFRRHIPKKSKIMAVVKANAYGHGSVEVARHALEHGASELAVASVEEAVVLRKAGIKA
PILVLGFTPLSCVKEAAAWNISLSAFQVDWIKEANEILENEADPNRLAVHINVDTGMGRLGVRTKEKLLAIVEALTASEN
LEWEGIFTHFSTADEPDTELTMIQHEKFISFLRFLKEQGFKLPTVHMNNTAAAIAFPEFSADMIRLGIGMYGLYPSDYIR
QLNLVKLVPALSLKARIAYVKTMLTEPRTVSYGATYVAERGEVIATIPVGYADGYSRELSNRGFILHRGRRVPVAGRVTM
DMIMVSLGEGEGKQGEEVVIYGRQKGAEISVDEIAEMLDTINYEVVSTISWRVPRFYIRDGEIFKKSTPLLYV

Sequences:

>Translated_393_residues
MKKLCREVWVEVNLDAIKKNLRAFRRHIPKKSKIMAVVKANAYGHGSVEVARHALEHGASELAVASVEEAVVLRKAGIKA
PILVLGFTPLSCVKEAAAWNISLSAFQVDWIKEANEILENEADPNRLAVHINVDTGMGRLGVRTKEKLLAIVEALTASEN
LEWEGIFTHFSTADEPDTELTMIQHEKFISFLRFLKEQGFKLPTVHMNNTAAAIAFPEFSADMIRLGIGMYGLYPSDYIR
QLNLVKLVPALSLKARIAYVKTMLTEPRTVSYGATYVAERGEVIATIPVGYADGYSRELSNRGFILHRGRRVPVAGRVTM
DMIMVSLGEGEGKQGEEVVIYGRQKGAEISVDEIAEMLDTINYEVVSTISWRVPRFYIRDGEIFKKSTPLLYV
>Mature_393_residues
MKKLCREVWVEVNLDAIKKNLRAFRRHIPKKSKIMAVVKANAYGHGSVEVARHALEHGASELAVASVEEAVVLRKAGIKA
PILVLGFTPLSCVKEAAAWNISLSAFQVDWIKEANEILENEADPNRLAVHINVDTGMGRLGVRTKEKLLAIVEALTASEN
LEWEGIFTHFSTADEPDTELTMIQHEKFISFLRFLKEQGFKLPTVHMNNTAAAIAFPEFSADMIRLGIGMYGLYPSDYIR
QLNLVKLVPALSLKARIAYVKTMLTEPRTVSYGATYVAERGEVIATIPVGYADGYSRELSNRGFILHRGRRVPVAGRVTM
DMIMVSLGEGEGKQGEEVVIYGRQKGAEISVDEIAEMLDTINYEVVSTISWRVPRFYIRDGEIFKKSTPLLYV

Specific function: Provides the D-alanine required for cell wall biosynthesis [H]

COG id: COG0787

COG function: function code M; Alanine racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alanine racemase family [H]

Homologues:

Organism=Escherichia coli, GI1790487, Length=373, Percent_Identity=33.5120643431635, Blast_Score=160, Evalue=9e-41,
Organism=Escherichia coli, GI1787439, Length=375, Percent_Identity=30.6666666666667, Blast_Score=145, Evalue=3e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000821
- InterPro:   IPR009006
- InterPro:   IPR011079
- InterPro:   IPR001608
- InterPro:   IPR020622 [H]

Pfam domain/function: PF00842 Ala_racemase_C; PF01168 Ala_racemase_N [H]

EC number: =5.1.1.1 [H]

Molecular weight: Translated: 43840; Mature: 43840

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: PS00395 ALANINE_RACEMASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLCREVWVEVNLDAIKKNLRAFRRHIPKKSKIMAVVKANAYGHGSVEVARHALEHGAS
CHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHEEEEEEECCCCCCHHHHHHHHHHCCHH
ELAVASVEEAVVLRKAGIKAPILVLGFTPLSCVKEAAAWNISLSAFQVDWIKEANEILEN
HHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCEEEEEEEEEHHHHHHHHHHHC
EADPNRLAVHINVDTGMGRLGVRTKEKLLAIVEALTASENLEWEGIFTHFSTADEPDTEL
CCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCE
TMIQHEKFISFLRFLKEQGFKLPTVHMNNTAAAIAFPEFSADMIRLGIGMYGLYPSDYIR
EHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEEECCCCHHHHHHCCCCCCCCCHHHHH
QLNLVKLVPALSLKARIAYVKTMLTEPRTVSYGATYVAERGEVIATIPVGYADGYSRELS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEECCCCEEEEEECCCCCCHHHHHC
NRGFILHRGRRVPVAGRVTMDMIMVSLGEGEGKQGEEVVIYGRQKGAEISVDEIAEMLDT
CCCEEEECCCCCCEECHHHHHHHEEEECCCCCCCCCEEEEEECCCCCEECHHHHHHHHHH
INYEVVSTISWRVPRFYIRDGEIFKKSTPLLYV
CCHHEEEEEEECCCEEEEECCCEEECCCCEEEC
>Mature Secondary Structure
MKKLCREVWVEVNLDAIKKNLRAFRRHIPKKSKIMAVVKANAYGHGSVEVARHALEHGAS
CHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHEEEEEEECCCCCCHHHHHHHHHHCCHH
ELAVASVEEAVVLRKAGIKAPILVLGFTPLSCVKEAAAWNISLSAFQVDWIKEANEILEN
HHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCEEEEEEEEEHHHHHHHHHHHC
EADPNRLAVHINVDTGMGRLGVRTKEKLLAIVEALTASENLEWEGIFTHFSTADEPDTEL
CCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCE
TMIQHEKFISFLRFLKEQGFKLPTVHMNNTAAAIAFPEFSADMIRLGIGMYGLYPSDYIR
EHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEEECCCCHHHHHHCCCCCCCCCHHHHH
QLNLVKLVPALSLKARIAYVKTMLTEPRTVSYGATYVAERGEVIATIPVGYADGYSRELS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEECCCCEEEEEECCCCCCHHHHHC
NRGFILHRGRRVPVAGRVTMDMIMVSLGEGEGKQGEEVVIYGRQKGAEISVDEIAEMLDT
CCCEEEECCCCCCEECHHHHHHHEEEECCCCCCCCCEEEEEECCCCCEECHHHHHHHHHH
INYEVVSTISWRVPRFYIRDGEIFKKSTPLLYV
CCHHEEEEEEECCCEEEEECCCEEECCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]