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The map label for this gene is ytkC [H]

Identifier: 52786930

GI number: 52786930

Start: 3088834

End: 3089238

Strand: Reverse

Name: ytkC [H]

Synonym: BLi03206

Alternate gene names: 52786930

Gene position: 3089238-3088834 (Counterclockwise)

Preceding gene: 52786931

Following gene: 52786929

Centisome position: 73.16

GC content: 38.77

Gene sequence:

>405_bases
ATGTTTAAGGACTTAAGCATCTTTTCGCTCTTTACAATTGGTTTATCGGCCATCGGATTTTTGTTTGGCCGAATCGAATA
TTTATTTATGATCTTAATTACGCTGATGGGCATTGAATTTGTCAGCAAAAGCTTGAACGAATGTGTGGAAGATCGATTTA
CAATTAAGAGGCTGTTTACAAGGCTGGCGAAAAAATTGGTTACGCTCTTTCTGATATCCGTTGCCCACCTTTTTGATCAA
ATGCTGCAAACAGGCAGTTCGATCCGCGATTTTTCTATTATGTTTTATATTTTATATGAAGCGTTTCAAATCGTGAGCAC
GGCTCATTCGTTAGGAATCCCCGTGCCGCAGATGTTATTGGACATTTTAAATACCATAAAGGAAAAACTCCGGGGAAAGC
CGTAA

Upstream 100 bases:

>100_bases
GCCTTTTTTAGAAATTGTCAAACAATTCATCCAAGCCTTTCAAAGTCTTTTTTCATAGGATAAGCTATGAAAAGTCTTTT
TTGAAAGGATGTTGAAGCAT

Downstream 100 bases:

>100_bases
CATTTTAAAACAACTGGTCATACTAACACGAAAAAGGATGATTGGCTTTGGAAAAAAAGACATACTATGTTTCGGTGCAA
GATGGAATGATTTCGCAGAG

Product: YtkC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MFKDLSIFSLFTIGLSAIGFLFGRIEYLFMILITLMGIEFVSKSLNECVEDRFTIKRLFTRLAKKLVTLFLISVAHLFDQ
MLQTGSSIRDFSIMFYILYEAFQIVSTAHSLGIPVPQMLLDILNTIKEKLRGKP

Sequences:

>Translated_134_residues
MFKDLSIFSLFTIGLSAIGFLFGRIEYLFMILITLMGIEFVSKSLNECVEDRFTIKRLFTRLAKKLVTLFLISVAHLFDQ
MLQTGSSIRDFSIMFYILYEAFQIVSTAHSLGIPVPQMLLDILNTIKEKLRGKP
>Mature_134_residues
MFKDLSIFSLFTIGLSAIGFLFGRIEYLFMILITLMGIEFVSKSLNECVEDRFTIKRLFTRLAKKLVTLFLISVAHLFDQ
MLQTGSSIRDFSIMFYILYEAFQIVSTAHSLGIPVPQMLLDILNTIKEKLRGKP

Specific function: Unknown

COG id: COG4824

COG function: function code R; Phage-related holin (Lysis protein)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cp-1 holin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006480 [H]

Pfam domain/function: PF05105 Phage_holin_4 [H]

EC number: NA

Molecular weight: Translated: 15381; Mature: 15381

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKDLSIFSLFTIGLSAIGFLFGRIEYLFMILITLMGIEFVSKSLNECVEDRFTIKRLFT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLAKKLVTLFLISVAHLFDQMLQTGSSIRDFSIMFYILYEAFQIVSTAHSLGIPVPQMLL
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
DILNTIKEKLRGKP
HHHHHHHHHHCCCC
>Mature Secondary Structure
MFKDLSIFSLFTIGLSAIGFLFGRIEYLFMILITLMGIEFVSKSLNECVEDRFTIKRLFT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLAKKLVTLFLISVAHLFDQMLQTGSSIRDFSIMFYILYEAFQIVSTAHSLGIPVPQMLL
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
DILNTIKEKLRGKP
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]