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The map label for this gene is ytrF [H]

Identifier: 52786905

GI number: 52786905

Start: 3064556

End: 3065887

Strand: Reverse

Name: ytrF [H]

Synonym: BLi03181

Alternate gene names: 52786905

Gene position: 3065887-3064556 (Counterclockwise)

Preceding gene: 52786906

Following gene: 52786903

Centisome position: 72.61

GC content: 44.37

Gene sequence:

>1332_bases
TTGAAGTTTAAGGACCAGTTGAAGTTCATTAGAAGAAATATGAGGAAAAACCGCCTGCGTGTATTCATGACCATTCTCGC
AACAACGGTGGCCTGCGCGTTTTTAATCGTGCTCGCATCGGTCGGATTCGGACTGCAAAAATCAATGACTGAACAGCTGA
TGAAAGAGCAGATCGTGACCGAGATAAATGTTGTCGGAAAAGAAGGGCAAAGCGATCAAAAGGTTCAAAAGAAAGACCTG
AAAGAATTTGAAAACCGCAAAGATGTGTCCGCGATTATCGAGCGCACAAACGTGTTCGCACCTGCTGAAGCAAAATTGGG
CAACAGGACCAATAATCAAATGTCGAATATTACAATTACCGACATGGCCGCTGAGCAAAAAGCCAATATCAAACTCGATC
GCGGCCGCGTAGCGAAAACACCGAATGAAATTGTCGTCGGCTACCATTTCGGGAAGAACCTCTGGACGAAAAAGGAAGCC
GCAGATTATGAAAAGCAGATGGAAAATAATGCTGAGGAAGCAAAAGAGCCGAAAGGATACGAAGAAGATATTCTCGGCAA
AACGATTGAATTAAAGATCTCAAAAATGGATGAAAAAACAGGAGAAGAAGGGGAAGCGAAAACATATGATCTGAAAGTTG
TCGGAGTGACAAAAAAACCTTCGTATGAATGGGCGAGCGATTCAACAGTCTATGTCAGCAACGGCATGCAAAAAGACATC
ACCGGCTTTCTGAAGTCGGAAAAAGACAGCGGCATGATCGAAAAAACGCTTTCGGTTTACGCGGATAACTTTGAACATGT
CGGACAGCTGACAACAGATTTGGAGGATGAAGGCTACTACGTCGATTCAATAACGAAAAAGCTCGATAGCATCAATCTTT
TTTTCATGGCTTTTAAAATCGGTCTGATCTTTGTCGGAGTCATTGCCGTCTTTATTTCAGCGATCGGGATTTTCAACACG
ATGACAATGGCGGTTACAGAGCGGACGCAGGAAATCGGCATTATGAAAGCGATCGGTGCAAGCCCGAATGTGATCCGAAA
AATGTTCCTGCTGGAAAGCGCCTATATCGGCATCTTAGGATCTGTTTTAGGTATTATCATTTCATACGGTGTCAGCTTTT
TAGTGAACAAGATTATACCTGTCATTTTATCATCGGTTTCAGAAGGAGAAGCGAGTGCGGCAGAGCTCAGTATCACCTTC
TCGCATATTCCGGTCAGTCTTGTCCTCATCGCGACATTGATCAGTGCGGGTGTCGCCATTCTTTCCGGCCTGAATCCGGC
CATTAAAGCGACAAGAACGAACGTGCTGACAGCATTAAGAAGAGAGCTTTAG

Upstream 100 bases:

>100_bases
ATTACATTTGTCATCATCACGCACGATGACGAGGTGGCATCGATCGCCAATACGAAATTTCATTTATCTGACGGCGTGTT
AGAGAAAGGGGAAGAGACTG

Downstream 100 bases:

>100_bases
GAAAAAAGCCGGCGGTATGCCGGCTTTTTAACGTTTTGGCGGTCTGTACCCCGCATCACGCGCCTCCTGTTCTGTGCAGA
ACCAGCGAGCGACGTTTTTC

Product: YtrF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MKFKDQLKFIRRNMRKNRLRVFMTILATTVACAFLIVLASVGFGLQKSMTEQLMKEQIVTEINVVGKEGQSDQKVQKKDL
KEFENRKDVSAIIERTNVFAPAEAKLGNRTNNQMSNITITDMAAEQKANIKLDRGRVAKTPNEIVVGYHFGKNLWTKKEA
ADYEKQMENNAEEAKEPKGYEEDILGKTIELKISKMDEKTGEEGEAKTYDLKVVGVTKKPSYEWASDSTVYVSNGMQKDI
TGFLKSEKDSGMIEKTLSVYADNFEHVGQLTTDLEDEGYYVDSITKKLDSINLFFMAFKIGLIFVGVIAVFISAIGIFNT
MTMAVTERTQEIGIMKAIGASPNVIRKMFLLESAYIGILGSVLGIIISYGVSFLVNKIIPVILSSVSEGEASAAELSITF
SHIPVSLVLIATLISAGVAILSGLNPAIKATRTNVLTALRREL

Sequences:

>Translated_443_residues
MKFKDQLKFIRRNMRKNRLRVFMTILATTVACAFLIVLASVGFGLQKSMTEQLMKEQIVTEINVVGKEGQSDQKVQKKDL
KEFENRKDVSAIIERTNVFAPAEAKLGNRTNNQMSNITITDMAAEQKANIKLDRGRVAKTPNEIVVGYHFGKNLWTKKEA
ADYEKQMENNAEEAKEPKGYEEDILGKTIELKISKMDEKTGEEGEAKTYDLKVVGVTKKPSYEWASDSTVYVSNGMQKDI
TGFLKSEKDSGMIEKTLSVYADNFEHVGQLTTDLEDEGYYVDSITKKLDSINLFFMAFKIGLIFVGVIAVFISAIGIFNT
MTMAVTERTQEIGIMKAIGASPNVIRKMFLLESAYIGILGSVLGIIISYGVSFLVNKIIPVILSSVSEGEASAAELSITF
SHIPVSLVLIATLISAGVAILSGLNPAIKATRTNVLTALRREL
>Mature_443_residues
MKFKDQLKFIRRNMRKNRLRVFMTILATTVACAFLIVLASVGFGLQKSMTEQLMKEQIVTEINVVGKEGQSDQKVQKKDL
KEFENRKDVSAIIERTNVFAPAEAKLGNRTNNQMSNITITDMAAEQKANIKLDRGRVAKTPNEIVVGYHFGKNLWTKKEA
ADYEKQMENNAEEAKEPKGYEEDILGKTIELKISKMDEKTGEEGEAKTYDLKVVGVTKKPSYEWASDSTVYVSNGMQKDI
TGFLKSEKDSGMIEKTLSVYADNFEHVGQLTTDLEDEGYYVDSITKKLDSINLFFMAFKIGLIFVGVIAVFISAIGIFNT
MTMAVTERTQEIGIMKAIGASPNVIRKMFLLESAYIGILGSVLGIIISYGVSFLVNKIIPVILSSVSEGEASAAELSITF
SHIPVSLVLIATLISAGVAILSGLNPAIKATRTNVLTALRREL

Specific function: Part of the ABC transporter complex ytrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG0577

COG function: function code V; ABC-type antimicrobial peptide transport system, permease component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential). Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ABC-4 integral membrane protein family [H]

Homologues:

Organism=Escherichia coli, GI1787105, Length=164, Percent_Identity=32.3170731707317, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003838 [H]

Pfam domain/function: PF02687 FtsX [H]

EC number: NA

Molecular weight: Translated: 49008; Mature: 49008

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFKDQLKFIRRNMRKNRLRVFMTILATTVACAFLIVLASVGFGLQKSMTEQLMKEQIVT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
EINVVGKEGQSDQKVQKKDLKEFENRKDVSAIIERTNVFAPAEAKLGNRTNNQMSNITIT
HHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCEEEE
DMAAEQKANIKLDRGRVAKTPNEIVVGYHFGKNLWTKKEAADYEKQMENNAEEAKEPKGY
EHHHHCCCCEEECCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCHHHHCCCCCC
EEDILGKTIELKISKMDEKTGEEGEAKTYDLKVVGVTKKPSYEWASDSTVYVSNGMQKDI
CHHHCCCEEEEEEEHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCHHHH
TGFLKSEKDSGMIEKTLSVYADNFEHVGQLTTDLEDEGYYVDSITKKLDSINLFFMAFKI
HHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
GLIFVGVIAVFISAIGIFNTMTMAVTERTQEIGIMKAIGASPNVIRKMFLLESAYIGILG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
SVLGIIISYGVSFLVNKIIPVILSSVSEGEASAAELSITFSHIPVSLVLIATLISAGVAI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHH
LSGLNPAIKATRTNVLTALRREL
HHCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKFKDQLKFIRRNMRKNRLRVFMTILATTVACAFLIVLASVGFGLQKSMTEQLMKEQIVT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
EINVVGKEGQSDQKVQKKDLKEFENRKDVSAIIERTNVFAPAEAKLGNRTNNQMSNITIT
HHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCEEEE
DMAAEQKANIKLDRGRVAKTPNEIVVGYHFGKNLWTKKEAADYEKQMENNAEEAKEPKGY
EHHHHCCCCEEECCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCHHHHCCCCCC
EEDILGKTIELKISKMDEKTGEEGEAKTYDLKVVGVTKKPSYEWASDSTVYVSNGMQKDI
CHHHCCCEEEEEEEHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCHHHH
TGFLKSEKDSGMIEKTLSVYADNFEHVGQLTTDLEDEGYYVDSITKKLDSINLFFMAFKI
HHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
GLIFVGVIAVFISAIGIFNTMTMAVTERTQEIGIMKAIGASPNVIRKMFLLESAYIGILG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
SVLGIIISYGVSFLVNKIIPVILSSVSEGEASAAELSITFSHIPVSLVLIATLISAGVAI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHH
LSGLNPAIKATRTNVLTALRREL
HHCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]