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The map label for this gene is yrkH [H]

Identifier: 52786527

GI number: 52786527

Start: 2680399

End: 2681529

Strand: Reverse

Name: yrkH [H]

Synonym: BLi02792

Alternate gene names: 52786527

Gene position: 2681529-2680399 (Counterclockwise)

Preceding gene: 52786528

Following gene: 52786526

Centisome position: 63.5

GC content: 41.2

Gene sequence:

>1131_bases
GTGAATTTTACATTCGTTTCACCAAAAGAAGTAGCTGAAAAGCTATTAAGAAAAGAATCATTTTTTATTTTAGACGTACG
AAATAAAGAGGCCCTTAGTGATTGGAAAATCGAGGGAAGCCGGGTTGAACATTTAAATGTTCCGTATTTTGATTTAATTG
ATGGTATAGAAAAAATTGATGGCCAAGTTCCTAAAGATCAAGATGTTCTAGTCGTTTGCGCCAAACAAGGGTCTTCAGAG
ATGGTTGCACAGCATTTAGTGGATGCCGGTTTTGAAAGAGTGCTGGTACTTAAAGGCGGTATGAAGGCGTGGAGCAAATT
TTTACATCCAGTCAAAATCGGAGACTTGAAAGAAGGAGGGACGATCTATCAATTCGTAAGAATGGGGAAAGGCTGTTTAT
CCTATTTTATCGAAACCGACGGAGAAGCAATTGTAGTTGACCCTGCTCGTTCTGTTGATGCATATATAGATTTTGCGAAA
GAGAGAAACGTTACGATTAAACATGTGGTCGATACACACTTACATGCGGATCATATTTCGGGCGGACGTTTACTGCGTAA
GCGTACAGGAGCTGCATACTACCTGCCGCCAAAAGATGCGGAGGAAGTGCTATTTTCATATGAACCGCTAGTTGAAGATG
AAAATATTTCTGTAGGAAGCGCAGGTATGAAAGCAGAACCTATTTACTCACCTGGACATACGATTGGTAGCACCTCTTTA
ATGATTGATAATCGCTATTTGTTAACAGGAGATATTTTATTTGTTGAATCGATTGGCCGGCCGGACTTAGCTGGAAAAGC
CGGGGATTGGGCAGAGGATTTGCGTAACACATTGTATGTAAAATACAAACAAATATCAGGTGACTTGATTGTTCTTCCAG
CTCACTTTTCGACAGTCAGTGAATTAGGCGATCAGGGGCAAGTCCAAGCTAAGCTGAGTGATTTATATAAAAAGAATGCC
GGTTTAAATCTGGATGAAAATGAATTCAAAGGGGCTGTATCAGAAAATCTGCCGCCACAGCCAAATGCATATCAGGAAAT
CCGTCAAACCAACATGGGCAAAATAATGCCTGATGCTGACAGGCAAAGCGAGATGGAAATGGGACCGAACCGTTGTGCGG
TTCATGGATGA

Upstream 100 bases:

>100_bases
AAGAAAAATTGGAGGAATGATTTGAATGGCCGTAAAAGTTGCAATCATTGCAACAAGTTCTGATGCCATTTGGGCTCTAA
CATTTTAAGGAGGTTTAAAT

Downstream 100 bases:

>100_bases
ATATAGATTTGAAGATAGGGAGAGATAAAAAATGAAATCAGATAAAGTAATAGATGCTAAAGGATTTGCGTGCCCGATGC
CAATTGTGAAAACAAAAAAA

Product: YrkH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MNFTFVSPKEVAEKLLRKESFFILDVRNKEALSDWKIEGSRVEHLNVPYFDLIDGIEKIDGQVPKDQDVLVVCAKQGSSE
MVAQHLVDAGFERVLVLKGGMKAWSKFLHPVKIGDLKEGGTIYQFVRMGKGCLSYFIETDGEAIVVDPARSVDAYIDFAK
ERNVTIKHVVDTHLHADHISGGRLLRKRTGAAYYLPPKDAEEVLFSYEPLVEDENISVGSAGMKAEPIYSPGHTIGSTSL
MIDNRYLLTGDILFVESIGRPDLAGKAGDWAEDLRNTLYVKYKQISGDLIVLPAHFSTVSELGDQGQVQAKLSDLYKKNA
GLNLDENEFKGAVSENLPPQPNAYQEIRQTNMGKIMPDADRQSEMEMGPNRCAVHG

Sequences:

>Translated_376_residues
MNFTFVSPKEVAEKLLRKESFFILDVRNKEALSDWKIEGSRVEHLNVPYFDLIDGIEKIDGQVPKDQDVLVVCAKQGSSE
MVAQHLVDAGFERVLVLKGGMKAWSKFLHPVKIGDLKEGGTIYQFVRMGKGCLSYFIETDGEAIVVDPARSVDAYIDFAK
ERNVTIKHVVDTHLHADHISGGRLLRKRTGAAYYLPPKDAEEVLFSYEPLVEDENISVGSAGMKAEPIYSPGHTIGSTSL
MIDNRYLLTGDILFVESIGRPDLAGKAGDWAEDLRNTLYVKYKQISGDLIVLPAHFSTVSELGDQGQVQAKLSDLYKKNA
GLNLDENEFKGAVSENLPPQPNAYQEIRQTNMGKIMPDADRQSEMEMGPNRCAVHG
>Mature_376_residues
MNFTFVSPKEVAEKLLRKESFFILDVRNKEALSDWKIEGSRVEHLNVPYFDLIDGIEKIDGQVPKDQDVLVVCAKQGSSE
MVAQHLVDAGFERVLVLKGGMKAWSKFLHPVKIGDLKEGGTIYQFVRMGKGCLSYFIETDGEAIVVDPARSVDAYIDFAK
ERNVTIKHVVDTHLHADHISGGRLLRKRTGAAYYLPPKDAEEVLFSYEPLVEDENISVGSAGMKAEPIYSPGHTIGSTSL
MIDNRYLLTGDILFVESIGRPDLAGKAGDWAEDLRNTLYVKYKQISGDLIVLPAHFSTVSELGDQGQVQAKLSDLYKKNA
GLNLDENEFKGAVSENLPPQPNAYQEIRQTNMGKIMPDADRQSEMEMGPNRCAVHG

Specific function: Unknown

COG id: COG0491

COG function: function code R; Zn-dependent hydrolases, including glyoxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain [H]

Homologues:

Organism=Drosophila melanogaster, GI221330176, Length=200, Percent_Identity=27, Blast_Score=69, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR001763 [H]

Pfam domain/function: PF00753 Lactamase_B; PF00581 Rhodanese [H]

EC number: NA

Molecular weight: Translated: 41763; Mature: 41763

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS50206 RHODANESE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFTFVSPKEVAEKLLRKESFFILDVRNKEALSDWKIEGSRVEHLNVPYFDLIDGIEKID
CCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHC
GQVPKDQDVLVVCAKQGSSEMVAQHLVDAGFERVLVLKGGMKAWSKFLHPVKIGDLKEGG
CCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCCEEECCCCCCC
TIYQFVRMGKGCLSYFIETDGEAIVVDPARSVDAYIDFAKERNVTIKHVVDTHLHADHIS
HHHHHHHHCHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCC
GGRLLRKRTGAAYYLPPKDAEEVLFSYEPLVEDENISVGSAGMKAEPIYSPGHTIGSTSL
CCHHHHHHCCCEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
MIDNRYLLTGDILFVESIGRPDLAGKAGDWAEDLRNTLYVKYKQISGDLIVLPAHFSTVS
EEECEEEEEECEEEEECCCCCCCCCCCCCHHHHHHHHEEEEEEECCCCEEEEECCHHHHH
ELGDQGQVQAKLSDLYKKNAGLNLDENEFKGAVSENLPPQPNAYQEIRQTNMGKIMPDAD
HCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCHHCCCCCCCCHHHHHHHCCCCCCCCCCC
RQSEMEMGPNRCAVHG
CCHHHHCCCCCEECCC
>Mature Secondary Structure
MNFTFVSPKEVAEKLLRKESFFILDVRNKEALSDWKIEGSRVEHLNVPYFDLIDGIEKID
CCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHC
GQVPKDQDVLVVCAKQGSSEMVAQHLVDAGFERVLVLKGGMKAWSKFLHPVKIGDLKEGG
CCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCCEEECCCCCCC
TIYQFVRMGKGCLSYFIETDGEAIVVDPARSVDAYIDFAKERNVTIKHVVDTHLHADHIS
HHHHHHHHCHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCC
GGRLLRKRTGAAYYLPPKDAEEVLFSYEPLVEDENISVGSAGMKAEPIYSPGHTIGSTSL
CCHHHHHHCCCEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
MIDNRYLLTGDILFVESIGRPDLAGKAGDWAEDLRNTLYVKYKQISGDLIVLPAHFSTVS
EEECEEEEEECEEEEECCCCCCCCCCCCCHHHHHHHHEEEEEEECCCCEEEEECCHHHHH
ELGDQGQVQAKLSDLYKKNAGLNLDENEFKGAVSENLPPQPNAYQEIRQTNMGKIMPDAD
HCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCHHCCCCCCCCHHHHHHHCCCCCCCCCCC
RQSEMEMGPNRCAVHG
CCHHHHCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]