Click here to switch to the map view.

The map label for this gene is (sigK [H]

Identifier: 52786517

GI number: 52786517

Start: 2671872

End: 2672252

Strand: Direct

Name: (sigK [H]

Synonym: BLi02782

Alternate gene names: 52786517

Gene position: 2671872-2672252 (Clockwise)

Preceding gene: 52786508

Following gene: 52786533

Centisome position: 63.27

GC content: 43.83

Gene sequence:

>381_bases
TTGTTCGGTATCTTTTTAGTTCAGTCCCTCAACCTATTAAAACCTGTGAGTGGCATTGAAATCAGCCTCATTGATGCCCT
CAGGATCGGAAAACGAAGACGTCATCGACACCATTCAGTTCAAGCACAGAGCTTGAAAAAGTCAAAAAATTCATTGACAT
CCTGGACGGCAGAGAAAAAGAAGTTTATTGCCGGCCGCTTTAGCCTTGATTTGAAGAAAGAAAAAACGCAGCGGGAAATT
GCGAAGGAGCTCGGGATTTCACGGAGCTATGTGTCGCGGATAGAGAAGCGGGCGCTGATGAAGGTGTTTCACGAGTTTTA
CCGGGAGAAGAAGGAGCTTTTTCCTAATTTGGAATATAAAAAGACCGCAAAGCTTTCTTAA

Upstream 100 bases:

>100_bases
AAATGAAACAAAAATATATTTTTTTATACACAGAATTGATCATTCATTACCTTCAGTTTGTATCTTTTTATTTTGTCATC
AAACAGGAACTATTTAGATA

Downstream 100 bases:

>100_bases
AGAAACGTTGCGGTCTTTGGGTCTCTTTCTTGCTTAGTATAAAGTCAATGGATTTCCAGCGCGAATCCAGTGGACATACA
TCCATTGATTGGCTTCCCCT

Product: hypothetical protein

Products: NA

Alternate protein names: Sigma-27; Stage IV sporulation protein CB [H]

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MFGIFLVQSLNLLKPVSGIEISLIDALRIGKRRRHRHHSVQAQSLKKSKNSLTSWTAEKKKFIAGRFSLDLKKEKTQREI
AKELGISRSYVSRIEKRALMKVFHEFYREKKELFPNLEYKKTAKLS

Sequences:

>Translated_126_residues
MFGIFLVQSLNLLKPVSGIEISLIDALRIGKRRRHRHHSVQAQSLKKSKNSLTSWTAEKKKFIAGRFSLDLKKEKTQREI
AKELGISRSYVSRIEKRALMKVFHEFYREKKELFPNLEYKKTAKLS
>Mature_126_residues
MFGIFLVQSLNLLKPVSGIEISLIDALRIGKRRRHRHHSVQAQSLKKSKNSLTSWTAEKKKFIAGRFSLDLKKEKTQREI
AKELGISRSYVSRIEKRALMKVFHEFYREKKELFPNLEYKKTAKLS

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is responsible for the expression of sporulation specific genes in the mother cell [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014209
- InterPro:   IPR016263
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 14790; Mature: 14790

Theoretical pI: Translated: 11.21; Mature: 11.21

Prosite motif: PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGIFLVQSLNLLKPVSGIEISLIDALRIGKRRRHRHHSVQAQSLKKSKNSLTSWTAEKK
CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KFIAGRFSLDLKKEKTQREIAKELGISRSYVSRIEKRALMKVFHEFYREKKELFPNLEYK
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
KTAKLS
HHCCCC
>Mature Secondary Structure
MFGIFLVQSLNLLKPVSGIEISLIDALRIGKRRRHRHHSVQAQSLKKSKNSLTSWTAEKK
CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KFIAGRFSLDLKKEKTQREIAKELGISRSYVSRIEKRALMKVFHEFYREKKELFPNLEYK
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
KTAKLS
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2536191; 2105293; 2841290; 3125151; 8969508; 9384377; 2492118 [H]