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The map label for this gene is deoC1 [H]

Identifier: 52786469

GI number: 52786469

Start: 2628993

End: 2629667

Strand: Reverse

Name: deoC1 [H]

Synonym: BLi02734

Alternate gene names: 52786469

Gene position: 2629667-2628993 (Counterclockwise)

Preceding gene: 52786470

Following gene: 52786467

Centisome position: 62.28

GC content: 51.11

Gene sequence:

>675_bases
ATGATGACAAAACAAATTGCGCGAATGATCGATCACACTGCATTGAAGCCAGATACCGTCAAATCCGAAATCGAAGCGCT
TTGCAAAGAAGCGCGTGTTTACGGTTTTGCCTCCGTTTGTGTCAACCCTTGCTGGGTGAAGCTTTGCGCCGAGCTTCTTA
AAGAGTCAGAGGTGAAAGTATGTACAGTTATCGGCTTTCCTTTAGGTGCAGCGTCTCCGGAAACAAAAGCCTTTGAAACC
AGGCAGGCAATTGCAGACGGTGCCGGTGAAGTTGATATGGTGATCAACATCGGTGCACTAAAAGACCGCGATACGGGAAC
AGTGGAACATGACATCAGGGCGGTGACAGACGCGGCCGACGGCAAAGCTCTTGTAAAAGTCATCATAGAGACGTCGCTTT
TGACGGATGAAGAAAAAAGGCTGGCTTGTGAACTGGCCGTAAAAGCAGGCGCCGACTTTGTCAAAACATCGACCGGTTTT
TCCGGCGGCGGTGCGACAGTCCGGGATATAAAACTGATGCGGGAAGCTGTCGGACCTGATATCGGCGTTAAAGCTTCAGG
TGGCGTCCGCGATAAGGAAAGCGCACTTGCCATGATTGAAGCCGGAGCGACGAGAATCGGAGCGAGCGCCGGCGTGTCGA
TTGTCAAAGGGTTAACAGCGGATGAAGACTACTAA

Upstream 100 bases:

>100_bases
CTTATCGTCATAAATCATCAATTCAGCCGGTTCACAAAAAAGGTGTTCCGGCTTTTTTTGCGAATATCTTAAGCAAACAA
CCACCTAAAAAGGAGTCAGG

Downstream 100 bases:

>100_bases
TCAAACAAAAACCAGGCGTTTATCGGGCCTGGTTTTTGTTTGGAATGAGAAACATGATCAGCGAATGAAACAGATTTGAG
AGCGGCAAAAACAATAGGGA

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase 1; DERA 1; Deoxyriboaldolase 1 [H]

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MMTKQIARMIDHTALKPDTVKSEIEALCKEARVYGFASVCVNPCWVKLCAELLKESEVKVCTVIGFPLGAASPETKAFET
RQAIADGAGEVDMVINIGALKDRDTGTVEHDIRAVTDAADGKALVKVIIETSLLTDEEKRLACELAVKAGADFVKTSTGF
SGGGATVRDIKLMREAVGPDIGVKASGGVRDKESALAMIEAGATRIGASAGVSIVKGLTADEDY

Sequences:

>Translated_224_residues
MMTKQIARMIDHTALKPDTVKSEIEALCKEARVYGFASVCVNPCWVKLCAELLKESEVKVCTVIGFPLGAASPETKAFET
RQAIADGAGEVDMVINIGALKDRDTGTVEHDIRAVTDAADGKALVKVIIETSLLTDEEKRLACELAVKAGADFVKTSTGF
SGGGATVRDIKLMREAVGPDIGVKASGGVRDKESALAMIEAGATRIGASAGVSIVKGLTADEDY
>Mature_224_residues
MMTKQIARMIDHTALKPDTVKSEIEALCKEARVYGFASVCVNPCWVKLCAELLKESEVKVCTVIGFPLGAASPETKAFET
RQAIADGAGEVDMVINIGALKDRDTGTVEHDIRAVTDAADGKALVKVIIETSLLTDEEKRLACELAVKAGADFVKTSTGF
SGGGATVRDIKLMREAVGPDIGVKASGGVRDKESALAMIEAGATRIGASAGVSIVKGLTADEDY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=220, Percent_Identity=32.2727272727273, Blast_Score=74, Evalue=1e-13,
Organism=Escherichia coli, GI1790841, Length=201, Percent_Identity=37.3134328358209, Blast_Score=96, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17533015, Length=214, Percent_Identity=31.3084112149533, Blast_Score=77, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 23504; Mature: 23504

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTKQIARMIDHTALKPDTVKSEIEALCKEARVYGFASVCVNPCWVKLCAELLKESEVKV
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCEE
CTVIGFPLGAASPETKAFETRQAIADGAGEVDMVINIGALKDRDTGTVEHDIRAVTDAAD
EEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCC
GKALVKVIIETSLLTDEEKRLACELAVKAGADFVKTSTGFSGGGATVRDIKLMREAVGPD
CHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHCCC
IGVKASGGVRDKESALAMIEAGATRIGASAGVSIVKGLTADEDY
CCCCCCCCCCCHHHHHHHHHHCCHHCCCHHCHHHHHCCCCCCCC
>Mature Secondary Structure
MMTKQIARMIDHTALKPDTVKSEIEALCKEARVYGFASVCVNPCWVKLCAELLKESEVKV
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCEE
CTVIGFPLGAASPETKAFETRQAIADGAGEVDMVINIGALKDRDTGTVEHDIRAVTDAAD
EEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCC
GKALVKVIIETSLLTDEEKRLACELAVKAGADFVKTSTGFSGGGATVRDIKLMREAVGPD
CHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHCCC
IGVKASGGVRDKESALAMIEAGATRIGASAGVSIVKGLTADEDY
CCCCCCCCCCCHHHHHHHHHHCCHHCCCHHCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA